IslandPath Analysis: Synechocystis sp. PCC 6803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.22   STD DEV: 4.98
Synechocystis sp. PCC 6803, complete genome - 1..3573470
3172 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
868	 51.63	0	953752..954456	+	234	16330036	-	slr1837	-	OmpR subfamily
869	 49.64	0	954453..955427	-	324	16330037	pdhB	sll1721	-	pyruvate dehydrogenase E1 beta subunit
870	 54.81	+1	955805..956116	+	103	16330038	ccmK	slr1838	-	carbon dioxide concentrating mechanism protein; CcmK
871	 51.33	0	956275..956613	+	112	16330039	ccmK	slr1839	-	carbon dioxide concentrating mechanism protein; CcmK
872	 49.82	0	956673..957788	+	371	16330040	-	slr1840	-	hypothetical protein
873	 50.71	0	958137..960029	+	630	16330041	-	slr1841	-	hypothetical protein
874	 48.59	0	960099..961094	+	331	16330042	cysK	slr1842	-	cysteine synthase
875	 49.80	0	961201..962730	+	509	16330043	zwf	slr1843	-	glucose-6-phosphate 1-dehydrogenase
876	 46.76	0	962888..965800	+	970	16330044	uvrA	slr1844	-	excinuclease ABC subunit A
877	 44.14	0	965938..967473	-	511	16330045	-	sll1717	-	hypothetical protein
878	 45.93	0	967567..968352	-	261	16330046	-	sll1716	-	transposase
879	 38.82	-1	968487..968960	-	157	16330047	-	sll1715	-	hypothetical protein
880	 38.56	-1	968893..969294	-	133	16330048	-	sll1714	-	hypothetical protein
881	 51.56	0	969762..970820	-	352	16330049	hisC	sll1713	-	threonine-phosphate decarboxylase
882	 47.30	0	970882..971289	-	135	16330050	-	sll1712	-	DNA binding protein HU
883	 48.48	0	971460..972317	-	285	16330051	-	sll1469	-	hypothetical protein
884	 50.27	0	972485..973954	+	489	16330052	-	slr1535	-	hypothetical protein
885	 52.33	0	974053..975489	+	478	16330053	recQ	slr1536	-	ATP-dependent DNA helicase; RecQ
886	 45.75	0	975779..976648	+	289	16330054	-	slr1537	-	hypothetical protein
887	 50.59	0	976748..977842	+	364	16330055	cbiD	slr1538	-	cobalt-precorrin-6A synthase
888	 50.11	0	977932..978867	+	311	16330056	-	slr1540	-	hypothetical protein
889	 46.45	0	978941..979573	+	210	16330057	-	slr1541	-	hypothetical protein
890	 51.65	0	979685..980170	+	161	16330058	ispF	slr1542	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
891	 50.18	0	980276..981694	+	472	16330059	-	slr1543	-	DNA-damage-inducible protein
892	 48.35	0	981691..982629	-	312	16330060	bhy	sll1468	-	b-carotene hydroxylase
893	 48.83	0	982968..983180	+	70	16330061	-	ssr2595	-	high light inducible protein
894	 46.79	0	983229..983540	+	103	16330062	-	slr1544	-	hypothetical protein
895	 51.19	0	983804..984475	+	223	16330063	rpoE	slr1545	-	RNA polymerase sigma factor RpoE
896	 49.14	0	984562..985200	+	212	16330064	-	slr1546	-	hypothetical protein
897	 46.55	0	985224..986222	+	332	16330065	-	slr1547	-	hypothetical protein
898	 48.87	0	986492..987733	-	413	16330066	-	sll1466	-	hypothetical protein
899	 46.05	0	987740..987967	-	75	16330067	-	ssl2823	-	hypothetical protein
900	 49.02	0	988072..989505	-	477	16330068	-	sll1464	-	hypothetical protein
901	 51.78	0	989717..991603	-	628	16330069	ftsH	sll1463	-	cell division protein; FtsH
902	 51.73	0	991735..992772	-	345	16330070	hypE	sll1462	-	hydrogenase expression/formation protein; HypE
903	 50.23	0	992821..993483	-	220	16330071	-	sll1461	-	hypothetical protein
904	 51.92	0	993536..994213	-	225	16330072	surE	sll1459	-	stationary phase survival protein SurE
905	 49.11	0	994343..994906	+	187	16330073	def	slr1549	-	peptide deformylase
906	 54.55	+1	995022..995219	+	65	16330074	-	ssr2611	-	hypothetical protein
907	 50.29	0	995275..996807	+	510	16330075	lysS	slr1550	-	lysyl-tRNA synthetase
908	 48.69	0	996850..997806	-	318	16330076	rfbJ	sll1457	-	RfbJ protein
909	 47.52	0	998010..998918	-	302	16330077	-	sll1456	-	hypothetical protein
910	 41.03	-1	999029..1001563	+	844	16330078	-	slr1552	-	hypothetical protein
911	 39.10	-1	1001639..1002106	-	155	16330079	-	sll1455	-	hypothetical protein
912	 43.68	0	1002633..1004777	-	714	16330080	narB	sll1454	-	nitrate reductase
913	 44.94	0	1005181..1006179	-	332	16330081	nrtD	sll1453	-	nitrate transport protein; NrtD
914	 48.04	0	1006234..1008246	-	670	16330082	nrtC	sll1452	-	nitrate transport protein; NrtC
915	 48.67	0	1008321..1009148	-	275	16330083	nrtB	sll1451	-	nitrate transport protein; NrtB
916	 48.02	0	1009234..1010574	-	446	16330084	nrtA	sll1450	-	nitrate transport 45kD protein
917	 50.19	0	1010710..1011759	-	349	16330085	-	sll1634	-	hypothetical protein
918	 55.04	+1	1011975..1012619	+	214	16330086	-	slr1748	-	hypothetical protein
919	 56.04	+1	1012616..1012888	-	90	16330087	repA	ssl3177	-	rare lipoprotein A
920	 51.97	0	1013045..1014337	-	430	16330088	ftsZ	sll1633	-	cell division protein FtsZ
921	 50.25	0	1014587..1015396	-	269	16330089	-	sll1632	-	hypothetical protein
922	 50.71	0	1015511..1016782	+	423	16330090	prc	slr1751	-	carboxyl-terminal protease
923	 47.45	0	1016830..1017495	+	221	16330091	-	slr1752	-	hypothetical protein
924	 50.00	0	1017600..1018493	-	297	161344767	mraW	sll1144	-	S-adenosyl-methyltransferase MraW
925	 49.69	0	1018650..1019126	+	158	16330093	-	slr1218	-	hypothetical protein
926	 52.45	0	1019155..1019583	+	142	16330094	ureE	slr1219	-	urease accessory protein E
927	 50.73	0	1019808..1020761	+	317	16330095	-	slr1220	-	hypothetical protein
928	 48.98	0	1021421..1022008	+	195	16330096	-	slr1222	-	hypothetical protein
929	 46.68	0	1022278..1024659	-	793	16330097	uvrD	sll1143	-	DNA helicase II
930	 50.57	0	1024825..1025346	-	173	16330098	-	sll1142	-	hypothetical protein
931	 50.20	0	1025423..1026442	+	339	16330099	sulA	slr1223	-	cell division inhibitor
932	 50.53	0	1026511..1027737	+	408	16330100	malK	slr1224	-	cytoplasmic membrane protein for maltose uptake
933	 49.26	0	1027844..1029331	+	495	16330101	pknA	slr1225	-	protein kinase; PknA
934	 51.54	0	1029337..1030083	-	248	16330102	-	sll1138	-	hypothetical protein
935	 49.31	0	1030195..1030989	+	264	16330103	purC	slr1226	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
936	 52.71	0	1031202..1033787	+	861	16330104	IAP75	slr1227	-	chloroplast import-associated channel IAP75
937	 49.33	0	1033902..1035545	+	547	16330105	prfC	slr1228	-	peptide chain release factor 3
938	 46.63	0	1035593..1037089	+	498	16330106	-	slr1229	-	hypothetical protein
939	 44.79	0	1037189..1038052	+	287	16330107	-	slr1230	-	hypothetical protein
940	 51.24	0	1038038..1039042	-	334	16330108	-	sll1135	-	hypothetical protein
941	 51.96	0	1039196..1039732	+	178	16330109	-	slr1232	-	hypothetical protein
942	 42.42	-1	1040092..1040355	+	87	16330110	-	ssr2047	-	hypothetical protein
943	 51.56	0	1040531..1042258	+	575	16330111	sdhA	slr1233	-	succinate dehydrogenase flavoprotein subunit
944	 42.86	-1	1042306..1042557	+	83	16330112	bchB	ssr2049	-	protochlorophillide reductase 57 kD subunit
945	 49.86	0	1042609..1042953	+	114	16330113	-	slr1234	-	protein kinase C inhibitor
946	 51.59	0	1042999..1043880	+	293	16330114	-	slr1235	-	hypothetical protein
947	 50.37	0	1043917..1044450	+	177	16330115	-	slr1236	-	hypothetical protein
948	 54.24	+1	1044517..1044693	-	58	16330116	-	ssl2250	-	glycoprotein 64
949	 42.63	-1	1044915..1046366	-	483	16330117	-	sll1132	-	hypothetical protein
950	 46.39	0	1046402..1046830	-	142	16330118	-	sll1131	-	hypothetical protein
951	 50.26	0	1047005..1048357	+	450	16330119	codA	slr1237	-	cytosine deaminase
952	 47.41	0	1048406..1048753	-	115	16330120	-	sll1130	-	hypothetical protein
953	 52.43	0	1048750..1049016	-	88	16330121	-	ssl2245	-	hypothetical protein
954	 49.72	0	1049517..1050407	-	296	16330122	todF	sll1129	-	2-hydroxy-6-oxohepta-2,4-dienoate hydrolase
955	 47.50	0	1050490..1050729	+	79	16330123	-	ssr2060	-	hypothetical protein
956	 47.94	0	1050812..1051078	+	88	16330124	grxC	ssr2061	-	glutaredoxin 3
957	 51.19	0	1051159..1052121	+	320	16330125	gshB	slr1238	-	glutathione synthetase
958	 53.18	0	1052518..1052784	+	88	16330126	-	ssr2062	-	hypothetical protein
959	 51.69	0	1052927..1053754	-	275	16330127	menB	sll1127	-	naphthoate synthase
960	 53.36	+1	1053955..1055547	+	530	16330128	pntA	slr1239	-	NAD(P) transhydrogenase subunit alpha
961	 37.96	-2	1055574..1056113	+	179	16330129	-	slr1240	-	hypothetical protein
962	 38.22	-2	1056119..1056466	+	115	16330130	-	slr1241	-	hypothetical protein
963	 42.86	-1	1056714..1056944	+	76	16330131	-	ssr2067	-	hypothetical protein
964	 51.98	0	1056985..1058427	+	480	16330132	pntB	slr1434	-	pyridine nucleotide transhydrogenase beta subunit
965	 48.13	0	1058537..1059820	+	427	16330133	pmbA	slr1435	-	PmbA protein
966	 39.44	-1	1059922..1060773	+	283	16330134	-	slr1436	-	hypothetical protein
967	 46.02	0	1060901..1061239	+	112	16330135	-	slr1437	-	hypothetical protein
48.22	MEAN

4.98	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.