IslandPath Analysis: Synechocystis sp. PCC 6803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.22   STD DEV: 4.98
Synechocystis sp. PCC 6803, complete genome - 1..3573470
3172 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
772	 53.55	+1	841300..841932	-	210	16329940	rplD	sll1800	-	50S ribosomal protein L4
773	 53.58	+1	841972..842613	-	213	16329941	rplC	sll1799	-	50S ribosomal protein L3
774	 50.11	0	843105..843575	+	156	16329942	-	slr1894	-	hypothetical protein
775	 53.33	+1	843613..844032	-	139	16329943	ycf21	sll1797	-	ycf21 gene product
776	 50.86	0	844180..845394	+	404	16329944	-	slr1895	-	hypothetical protein
777	 49.36	0	845482..845874	+	130	16329945	-	slr1896	-	hypothetical protein
778	 49.86	0	845966..846328	-	120	16329946	petJ	sll1796	-	cytochrome c553
779	 49.23	0	846509..847810	+	433	16329947	srrA	slr1897	-	SrrA
780	 52.24	0	848074..848967	+	297	16329948	argB	slr1898	-	acetylglutamate kinase
781	 47.40	0	849095..849748	+	217	16329949	ureF	slr1899	-	urease accessory protein F
782	 48.52	0	849802..850545	+	247	16329950	-	slr1900	-	hypothetical protein
783	 49.54	0	850605..851585	+	326	16329951	-	slr1901	-	ABC transporter
784	 43.90	0	851717..852142	+	141	16329952	-	slr1902	-	transposase
785	 46.28	0	852031..852447	+	138	16329953	-	slr1903	-	transposase
786	 44.52	0	852470..852898	-	142	16329954	-	sll1792	-	transposase
787	 49.10	0	852895..853281	-	128	16329955	-	sll1791	-	transposase
788	 54.15	+1	853497..857450	-	1317	16329956	rpoC2	sll1789	-	DNA-directed RNA polymerase subunit beta'
789	 52.95	0	857558..860866	-	1102	16329957	rpoB	sll1787	-	DNA-directed RNA polymerase subunit beta
790	 52.42	0	860952..861737	-	261	16329958	-	sll1786	-	hypothetical protein
791	 50.34	0	861873..862166	-	97	16329959	rpsT	ssl2233	-	30S ribosomal protein S20
792	 51.12	0	862262..866377	-	1371	16329960	-	sll1124	-	sensory transduction histidine kinase
793	 51.36	0	866374..867144	-	256	16329961	-	sll1123	-	hypothetical protein
794	 54.04	+1	867257..869569	-	770	16329962	-	sll1121	-	hypothetical protein
795	 49.32	0	869668..873270	-	1200	16329963	-	sll1120	-	chromosome segregation protein SMC1
796	 51.20	0	873465..874550	-	361	16329964	-	sll1119	-	hypothetical protein
797	 51.27	0	874693..875361	+	222	16329965	-	slr1194	-	hypothetical protein
798	 46.67	0	875515..875979	+	154	16329966	-	slr1195	-	hypothetical protein
799	 50.39	0	876008..877297	+	429	16329967	-	slr1196	-	hypothetical protein
800	 50.13	0	877325..878521	+	398	16329968	-	slr1197	-	hypothetical protein
801	 50.46	0	878564..878890	-	108	16329969	-	sll1118	-	hypothetical protein
802	 43.96	0	878937..879209	+	90	16329970	-	ssr2009	-	hypothetical protein
803	 49.37	0	879408..880043	+	211	16329971	-	slr1198	-	rehydrin
804	 51.30	0	880147..881838	+	563	16329972	mutL	slr1199	-	DNA mismatch repair protein
805	 51.07	0	882023..883189	+	388	16329973	livH	slr1200	-	high-affinity branched-chain amino acid transport protein
806	 48.50	0	883287..884519	+	410	16329974	-	slr1201	-	hypothetical protein
807	 50.28	0	884635..885531	+	298	16329975	lacF	slr1202	-	lactose transport system permease protein; LacF
808	 46.58	0	885641..886078	+	145	16329976	-	slr1203	-	hypothetical protein
809	 50.70	0	886184..887542	+	452	16329977	htrA	slr1204	-	serine protease; HtrA
810	 50.71	0	887590..888084	+	164	16329978	-	slr1205	-	ferredoxin component
811	 50.47	0	888358..888993	+	211	16329979	-	slr1206	-	hypothetical protein
812	 54.89	+1	889061..890605	+	514	16329980	-	slr1207	-	hypothetical protein
813	 48.99	0	890827..891024	+	65	16329981	-	ssr2016	-	hypothetical protein
814	 48.28	0	891276..893249	+	657	16329982	-	slr1208	-	short chain dehydrogenase
815	 38.48	-1	893261..893590	+	109	16329983	-	slr1209	-	hypothetical protein
816	 29.74	-2	893583..893972	+	129	16329984	-	slr1210	-	hypothetical protein
817	 43.92	0	893984..897262	+	1092	16329985	cobN	slr1211	-	cobaltochelatase
818	 39.17	-1	897354..899888	+	844	16329986	ETR1	slr1212	-	ethylene response sensor protein
819	 45.87	0	899937..900662	+	241	16329987	-	slr1213	-	AraC family transcription regulator
820	 42.90	-1	901197..902315	+	372	16329988	-	slr1214	-	PatA subfamily protein
821	 47.83	0	902387..903055	+	222	16329989	-	slr1215	-	hypothetical protein
822	 48.58	0	903148..903606	-	152	16329990	aroQ	sll1112	-	3-dehydroquinate dehydratase
823	 49.86	0	904115..905506	+	463	16329991	mgtE	slr1216	-	Mg2+ transporter
824	 48.23	0	905575..906789	-	404	16329992	-	sll1971	-	hypothetical protein
825	 50.76	0	906972..907826	+	284	16329993	-	slr2070	-	hypothetical protein
826	 47.53	0	907990..908313	+	107	16329994	-	slr2071	-	hypothetical protein
827	 49.43	0	908353..908961	-	202	16329995	-	sll1969	-	hypothetical protein
828	 48.58	0	908968..909636	-	222	16329996	pmgA	sll1968	-	PmgA
829	 50.65	0	909603..910994	-	463	16329997	-	sll1967	-	hypothetical protein
830	 50.88	0	911357..912883	+	508	16329998	ilvA	slr2072	-	threonine dehydratase
831	 50.27	0	913296..913856	+	186	16329999	-	slr2073	-	hypothetical protein
832	 50.51	0	914052..914441	+	129	16330000	manA	slr2074	-	mannose-6-phosphate isomerase
833	 45.01	0	914780..915190	-	136	16330001	-	sll1965	-	hypothetical protein
834	 48.29	0	915304..915624	+	106	16330002	groES	slr2075	-	co-chaperonin GroES
835	 52.58	0	915721..917346	+	541	16330003	groEL	slr2076	-	chaperonin GroEL
836	 36.11	-2	917816..920014	+	732	16330004	-	slr2077	-	hypothetical protein
837	 45.64	0	920331..920915	+	194	16330005	-	slr2078	-	hypothetical protein
838	 48.63	0	920942..921196	-	84	16330006	-	ssl3712	-	hypothetical protein
839	 51.33	0	921549..922637	-	362	16330007	aroC	sll1747	-	chorismate synthase
840	 48.06	0	922844..923230	-	128	16330008	rplL	sll1746	-	50S ribosomal protein L7/L12
841	 49.04	0	923318..923839	-	173	16330009	rplJ	sll1745	-	50S ribosomal protein L10
842	 51.05	0	924086..924802	-	238	16330010	rplA	sll1744	-	50S ribosomal protein L1
843	 49.06	0	924889..925314	-	141	16330011	rplK	sll1743	-	50S ribosomal protein L11
844	 50.65	0	925416..926033	-	205	16330012	nusG	sll1742	-	transcription antitermination protein NusG
845	 47.15	0	926313..926558	-	81	16330013	secE	ssl3335	-	secretory protein; SecE
846	 52.85	0	926860..927228	-	122	16330014	rplS	sll1740	-	50S ribosomal protein L19
847	 50.23	0	927333..927758	+	141	16330015	-	slr1826	-	hypothetical protein
848	 48.48	0	927959..928750	+	263	16330016	-	slr1827	-	hypothetical protein
849	 42.41	-1	928806..929885	-	359	16330017	-	sll1739	-	hypothetical protein
850	 51.29	0	930148..930843	-	231	16330018	-	sll1738	-	hypothetical protein
851	 43.06	-1	930907..931389	-	160	16330019	-	sll1737	-	hypothetical protein
852	 52.96	0	931639..931959	+	106	16330020	petF	slr1828	-	ferredoxin
853	 47.83	0	932071..933063	+	330	16330021	-	slr1829	-	hypothetical protein
854	 44.24	0	933157..934293	+	378	16330022	phbC	slr1830	-	poly(3-hydroxyalkanoate) synthase
855	 50.78	0	934324..934707	-	127	16330023	-	sll1736	-	hypothetical protein
856	 50.50	0	934835..935236	-	133	16330024	-	sll1735	-	secreted protein MPB70
857	 45.91	0	935409..936704	-	431	16330025	-	sll1734	-	hypothetical protein
858	 47.38	0	936768..938276	-	502	16330026	ndhD3	sll1733	-	NAD(P)H-quinone oxidoreductase subunit M
859	 44.43	0	938393..940240	-	615	16330027	ndhF	sll1732	-	NAD(P)H-quinone oxidoreductase subunit F
860	 50.87	0	940638..941270	-	210	16330028	-	sll1730	-	hypothetical protein
861	 53.77	+1	941686..943941	+	751	16330029	psaA	slr1834	-	photosystem I P700 chlorophyll a apoprotein A1
862	 52.00	0	944187..946382	+	731	16330030	psaB	slr1835	-	photosystem I P700 chlorophyll a apoprotein A2
863	 47.78	0	946522..947511	-	329	16330031	-	sll1726	-	hypothetical protein
864	 52.05	0	947511..949343	-	610	16330032	-	sll1725	-	ABC transporter
865	 51.67	0	949397..950536	-	379	16330033	icsA	sll1724	-	LPS glycosyltransferase; IcsA
866	 52.09	0	950533..951774	-	413	16330034	-	sll1723	-	hypothetical protein
867	 50.54	0	951797..953098	-	433	16330035	-	sll1722	-	hypothetical protein
868	 51.63	0	953752..954456	+	234	16330036	-	slr1837	-	OmpR subfamily
869	 49.64	0	954453..955427	-	324	16330037	pdhB	sll1721	-	pyruvate dehydrogenase E1 beta subunit
870	 54.81	+1	955805..956116	+	103	16330038	ccmK	slr1838	-	carbon dioxide concentrating mechanism protein; CcmK
871	 51.33	0	956275..956613	+	112	16330039	ccmK	slr1839	-	carbon dioxide concentrating mechanism protein; CcmK
48.22	MEAN

4.98	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.