IslandPath Analysis: Synechocystis sp. PCC 6803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.22   STD DEV: 4.98
Synechocystis sp. PCC 6803, complete genome - 1..3573470
3172 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
717	 41.52	-1	796789..797631	-	280	16329886	-	sll1081	-	integral membrane components of other binding-protein-dependent transport system
718	 46.18	0	797734..798792	-	352	16329887	-	sll1080	-	hypothetical protein
719	 44.78	0	798846..799535	-	229	16329888	hypB	sll1079	-	hydrogenase expression/formation protein; HypB
720	 44.63	0	799596..799958	-	120	16329889	-	sll1078	-	hypothetical protein
721	 52.00	0	800034..801206	-	390	16329890	speB	sll1077	-	agmatine ureohydrolase
722	 47.25	0	801643..802152	+	169	16329891	-	slr1142	-	hypothetical protein
723	 47.38	0	802207..803238	+	343	16329892	-	slr1143	-	hypothetical protein
724	 49.19	0	803466..806384	-	972	16329893	ziaA	sll1076	-	Zinc exporter
725	 49.12	0	806716..809325	-	869	16329894	leuS	sll1074	-	leucyl-tRNA synthetase
726	 47.73	0	809450..810658	+	402	16329895	gltS	slr1145	-	glutamate permease
727	 49.63	0	810922..811191	-	89	109150013	-	slr1146	-	hypothetical protein
728	 51.34	0	811489..812793	+	434	16329896	-	slr1147	-	sensory transduction histidine kinase
729	 48.15	0	813028..813594	+	188	16329897	-	slr1148	-	hypothetical protein
730	 49.17	0	813799..815604	+	601	16329898	-	slr1149	-	ABC transporter
731	 50.29	0	815703..816215	+	170	16329899	-	slr1150	-	hypothetical protein
732	 47.02	0	816298..816969	-	223	16329900	-	sll1072	-	hypothetical protein
733	 48.79	0	816983..817810	-	275	16329901	-	sll1071	-	hypothetical protein
734	 52.11	0	817967..819979	-	670	16329902	tktA	sll1070	-	transketolase
735	 50.84	0	820102..821352	-	416	16329903	fabF	sll1069	-	3-oxoacyl-(acyl carrier protein) synthase II
736	 43.59	0	821550..821783	-	77	16329904	acp	ssl2084	-	acyl carrier protein
737	 47.69	0	821993..822424	-	143	16329905	-	sll1068	-	hypothetical protein
738	 52.03	0	822461..822706	-	81	16329906	-	ssl3451	-	hypothetical protein
739	 42.75	-1	822837..823367	+	176	16329907	bfr	slr1890	-	bacterioferritin
740	 51.50	0	823383..824015	-	210	16329908	-	sll1825	-	short chain dehydrogenase
741	 48.21	0	824228..824785	-	185	16329909	-	sll1824	-	50S ribosomal protein L25
742	 52.00	0	824584..825831	-	415	16329910	purA	sll1823	-	adenylosuccinate synthetase
743	 42.22	-1	826070..826249	-	59	16329911	-	ssl3446	-	hypothetical protein
744	 46.34	0	826637..826882	-	81	16329912	rpmE	ssl3445	-	50S ribosomal protein L31
745	 53.38	+1	826935..827348	-	137	16329913	rpsI	sll1822	-	30S ribosomal protein S9
746	 48.90	0	827348..827803	-	151	16329914	rplM	sll1821	-	50S ribosomal protein L13
747	 53.02	0	827868..828695	-	275	16329915	truA	sll1820	-	tRNA pseudouridine synthase A
748	 54.42	+1	828713..829063	-	116	16329916	rplQ	sll1819	-	50S ribosomal protein L17
749	 50.69	0	829141..830085	-	314	16329917	rpoA	sll1818	-	DNA-directed RNA polymerase subunit alpha
750	 56.23	+1	830194..830586	-	130	16329918	rps11	sll1817	-	30S ribosomal protein S11
751	 54.69	+1	830635..831018	-	127	16329919	rpsM	sll1816	-	30S ribosomal protein S13
752	 47.01	0	831101..831217	-	38	16329920	rpl36	sml0006	-	50S ribosomal protein L36
753	 45.59	0	831355..831558	-	67	16329921	infA	ssl3441	-	translation initiation factor IF-1
754	 50.18	0	831702..832265	-	187	16329922	adk	sll1815	-	adenylate kinase
755	 48.76	0	832391..833719	-	442	16329923	secY	sll1814	-	preprotein translocase subunit SecY
756	 55.18	+1	833821..834264	-	147	16329924	rplO	sll1813	-	50S ribosomal protein L15
757	 51.92	0	834333..834854	-	173	16329925	rpsE	sll1812	-	30S ribosomal protein S5
758	 55.65	+1	834894..835256	-	120	16329926	rplR	sll1811	-	50S ribosomal protein L18
759	 54.07	+1	835260..835799	-	179	16329927	rplF	sll1810	-	50S ribosomal protein L6
760	 50.75	0	835859..836260	-	133	16329928	rpsH	sll1809	-	30S ribosomal protein S8
761	 50.25	0	836352..836954	-	200	16329929	rplE	sll1808	-	50S ribosomal protein L5
762	 48.56	0	837001..837348	-	115	16329930	rplX	sll1807	-	50S ribosomal protein L24
763	 53.12	0	837349..837717	-	122	16329931	rpl14	sll1806	-	50S ribosomal protein L14
764	 46.34	0	837741..837986	-	81	16329932	rpsQ	ssl3437	-	30S ribosomal protein S17
765	 50.90	0	837994..838215	-	73	16329933	rpmC	ssl3436	-	50S ribosomal protein L29
766	 54.29	+1	838218..838637	-	139	16329934	rplP	sll1805	-	50S ribosomal protein L16
767	 53.67	+1	838678..839400	-	240	16329935	rpsC	sll1804	-	30S ribosomal protein S3
768	 57.65	+1	839430..839795	-	121	16329936	rplV	sll1803	-	50S ribosomal protein L22
769	 50.18	0	839811..840089	-	92	16329937	rpsS	ssl3432	-	30S ribosomal protein S19
770	 54.15	+1	840122..840952	-	276	16329938	rplB	sll1802	-	50S ribosomal protein L2
771	 48.69	0	841002..841307	-	101	16329939	rplW	sll1801	-	50S ribosomal protein L23
772	 53.55	+1	841300..841932	-	210	16329940	rplD	sll1800	-	50S ribosomal protein L4
773	 53.58	+1	841972..842613	-	213	16329941	rplC	sll1799	-	50S ribosomal protein L3
774	 50.11	0	843105..843575	+	156	16329942	-	slr1894	-	hypothetical protein
775	 53.33	+1	843613..844032	-	139	16329943	ycf21	sll1797	-	ycf21 gene product
776	 50.86	0	844180..845394	+	404	16329944	-	slr1895	-	hypothetical protein
777	 49.36	0	845482..845874	+	130	16329945	-	slr1896	-	hypothetical protein
778	 49.86	0	845966..846328	-	120	16329946	petJ	sll1796	-	cytochrome c553
779	 49.23	0	846509..847810	+	433	16329947	srrA	slr1897	-	SrrA
780	 52.24	0	848074..848967	+	297	16329948	argB	slr1898	-	acetylglutamate kinase
781	 47.40	0	849095..849748	+	217	16329949	ureF	slr1899	-	urease accessory protein F
782	 48.52	0	849802..850545	+	247	16329950	-	slr1900	-	hypothetical protein
783	 49.54	0	850605..851585	+	326	16329951	-	slr1901	-	ABC transporter
784	 43.90	0	851717..852142	+	141	16329952	-	slr1902	-	transposase
785	 46.28	0	852031..852447	+	138	16329953	-	slr1903	-	transposase
786	 44.52	0	852470..852898	-	142	16329954	-	sll1792	-	transposase
787	 49.10	0	852895..853281	-	128	16329955	-	sll1791	-	transposase
788	 54.15	+1	853497..857450	-	1317	16329956	rpoC2	sll1789	-	DNA-directed RNA polymerase subunit beta'
789	 52.95	0	857558..860866	-	1102	16329957	rpoB	sll1787	-	DNA-directed RNA polymerase subunit beta
790	 52.42	0	860952..861737	-	261	16329958	-	sll1786	-	hypothetical protein
791	 50.34	0	861873..862166	-	97	16329959	rpsT	ssl2233	-	30S ribosomal protein S20
792	 51.12	0	862262..866377	-	1371	16329960	-	sll1124	-	sensory transduction histidine kinase
793	 51.36	0	866374..867144	-	256	16329961	-	sll1123	-	hypothetical protein
794	 54.04	+1	867257..869569	-	770	16329962	-	sll1121	-	hypothetical protein
795	 49.32	0	869668..873270	-	1200	16329963	-	sll1120	-	chromosome segregation protein SMC1
796	 51.20	0	873465..874550	-	361	16329964	-	sll1119	-	hypothetical protein
797	 51.27	0	874693..875361	+	222	16329965	-	slr1194	-	hypothetical protein
798	 46.67	0	875515..875979	+	154	16329966	-	slr1195	-	hypothetical protein
799	 50.39	0	876008..877297	+	429	16329967	-	slr1196	-	hypothetical protein
800	 50.13	0	877325..878521	+	398	16329968	-	slr1197	-	hypothetical protein
801	 50.46	0	878564..878890	-	108	16329969	-	sll1118	-	hypothetical protein
802	 43.96	0	878937..879209	+	90	16329970	-	ssr2009	-	hypothetical protein
803	 49.37	0	879408..880043	+	211	16329971	-	slr1198	-	rehydrin
804	 51.30	0	880147..881838	+	563	16329972	mutL	slr1199	-	DNA mismatch repair protein
805	 51.07	0	882023..883189	+	388	16329973	livH	slr1200	-	high-affinity branched-chain amino acid transport protein
806	 48.50	0	883287..884519	+	410	16329974	-	slr1201	-	hypothetical protein
807	 50.28	0	884635..885531	+	298	16329975	lacF	slr1202	-	lactose transport system permease protein; LacF
808	 46.58	0	885641..886078	+	145	16329976	-	slr1203	-	hypothetical protein
809	 50.70	0	886184..887542	+	452	16329977	htrA	slr1204	-	serine protease; HtrA
810	 50.71	0	887590..888084	+	164	16329978	-	slr1205	-	ferredoxin component
811	 50.47	0	888358..888993	+	211	16329979	-	slr1206	-	hypothetical protein
812	 54.89	+1	889061..890605	+	514	16329980	-	slr1207	-	hypothetical protein
813	 48.99	0	890827..891024	+	65	16329981	-	ssr2016	-	hypothetical protein
814	 48.28	0	891276..893249	+	657	16329982	-	slr1208	-	short chain dehydrogenase
815	 38.48	-1	893261..893590	+	109	16329983	-	slr1209	-	hypothetical protein
816	 29.74	-2	893583..893972	+	129	16329984	-	slr1210	-	hypothetical protein
48.22	MEAN

4.98	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.