IslandPath Analysis: Synechocystis sp. PCC 6803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.22   STD DEV: 4.98
Synechocystis sp. PCC 6803, complete genome - 1..3573470
3172 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
26	 56.29	+1	33891..35489	+	532	16329197	-	slr1484	-	hypothetical protein
27	 46.57	0	35566..36615	+	349	16329198	-	slr1485	-	hypothetical protein
28	 50.83	0	36721..38538	+	605	16329199	-	slr1488	-	ABC transporter
29	 43.10	-1	38644..39636	+	330	16329200	pchR	slr1489	-	regulatory protein; PchR
30	 46.45	0	39802..42363	+	853	16329201	fhuA	slr1490	-	ferrichrome-iron receptor
31	 50.25	0	42405..43397	+	330	16329202	fecB	slr1491	-	iron(III) dicitrate-binding periplasmic protein
32	 49.36	0	43571..44506	+	311	16329203	fecB	slr1492	-	iron(III) dicitrate-binding periplasmic protein
33	 46.62	0	44442..44885	+	147	16329204	-	slr1493	-	hypothetical protein
34	 48.70	0	44948..46789	+	613	16329205	-	slr1494	-	ABC transporter
35	 34.22	-2	47007..48017	-	336	16329206	-	sll1401	-	hypothetical protein
36	 37.13	-2	48067..48408	-	113	16329207	-	sll1400	-	hypothetical protein
37	 41.13	-1	48405..48635	-	76	16329208	-	ssl2733	-	hypothetical protein
38	 50.41	0	48663..49868	-	401	16329209	-	sll1399	-	hypothetical protein
39	 46.90	0	49893..50231	-	112	16329210	psb13	sll1398	-	photosystem II reaction center protein Psb28
40	 50.85	0	50246..51895	+	549	16329211	-	slr1495	-	hypothetical protein
41	 36.75	-2	52260..53108	-	282	16329212	-	sll1397	-	transposase
42	 41.93	-1	53453..54127	-	224	16329213	-	sll1396	-	hypothetical protein
43	 52.27	0	54533..55657	+	374	16329214	hypD	slr1498	-	hydrogenase isoenzyme formation protein; HypD
44	 52.55	0	55669..56511	-	280	16329215	rfbD	sll1395	-	dTDP-6-deoxy-L-mannose-dehydrogenase
45	 49.78	0	56556..57224	-	222	16329216	msrA	sll1394	-	methionine sulfoxide reductase A
46	 48.78	0	57340..58815	-	491	16329217	glgA	sll1393	-	glycogen synthase
47	 51.47	0	59039..59650	-	203	16329218	-	sll1392	-	hypothetical protein
48	 48.97	0	59746..60423	+	225	16329219	-	slr1501	-	hypothetical protein
49	 50.75	0	60524..61522	+	332	16329220	-	slr1113	-	ABC transporter
50	 51.59	0	61834..63591	+	585	16329221	-	slr1114	-	hypothetical protein
51	 49.61	0	63588..64361	+	257	16329222	-	slr1115	-	hypothetical protein
52	 42.53	-1	64393..64914	+	173	16329223	-	slr1116	-	hypothetical protein
53	 44.75	0	64987..65748	+	253	16329224	-	slr1117	-	hypothetical protein
54	 48.21	0	65827..67533	-	568	16329225	-	sll1064	-	hypothetical protein
55	 44.44	0	67606..68361	+	251	16329226	rffM	slr1118	-	UDP-N-acetyl-D-mannosaminuronic acid transferase
56	 51.82	0	68400..69059	-	219	16329227	-	sll1063	-	hypothetical protein
57	 52.42	0	69284..69985	+	233	16329228	-	slr1119	-	hypothetical protein
58	 36.24	-2	70016..70393	-	125	16329229	-	sll1062	-	hypothetical protein
59	 34.11	-2	70420..70935	-	171	16329230	-	sll1061	-	hypothetical protein
60	 47.24	0	70944..74042	-	1032	16329231	-	sll1060	-	hypothetical protein
61	 45.24	0	73978..74229	-	83	16329232	-	ssl2069	-	hypothetical protein
62	 46.88	0	74498..74785	+	95	16329233	-	ssr1853	-	hypothetical protein
63	 52.10	0	74995..75804	+	269	16329234	hofD	slr1120	-	type 4 prepilin peptidase
64	 49.82	0	75955..76500	-	181	16329235	adk	sll1059	-	adenylate kinase
65	 50.85	0	76580..77407	-	275	16329236	dapB	sll1058	-	dihydrodipicolinate reductase
66	 48.03	0	77494..77874	-	126	16329237	trx	sll1057	-	thioredoxin M
67	 52.96	0	78467..80800	-	777	16329238	purL	sll1056	-	phosphoribosylformylglycinamidine synthase II
68	 47.81	0	80938..81690	+	250	16329239	-	slr1122	-	hypothetical protein
69	 51.77	0	81696..82259	-	187	16329240	-	sll1054	-	hypothetical protein
70	 54.19	+1	82291..83853	-	520	16329241	-	sll1053	-	hypothetical protein
71	 51.56	0	84122..84697	+	191	16329242	gmk	slr1123	-	guanylate kinase
72	 51.90	0	85058..86107	+	349	16329243	gpmB	slr1124	-	phosphoglycerate mutase
73	 48.81	0	86159..87418	+	419	16329244	crtX	slr1125	-	zeaxanthin glucosyl transferase
74	 48.00	0	87536..87910	-	124	16329245	-	sll1052	-	hypothetical protein
75	 56.74	+1	88017..88661	-	214	16329246	cpcF	sll1051	-	phycocyanin alpha phycocyanobilin lyase; CpcF
76	 52.51	0	88818..90512	-	564	16329247	-	sll1049	-	hypothetical protein
77	 52.27	0	90620..91411	+	263	16329248	-	slr1127	-	hypothetical protein
78	 47.52	0	91517..92482	+	321	16329249	-	slr1128	-	putative membrane protein
79	 50.81	0	93128..95152	+	674	16329250	rne	slr1129	-	ribonuclease E
80	 52.53	0	95236..95808	+	190	16329251	rhnB	slr1130	-	ribonuclease HII
81	 51.58	0	95818..96228	-	136	16329252	mutT	sll1045	-	mutator MutT protein
82	 53.96	+1	96325..98481	-	718	16329253	pnp	sll1043	-	polynucleotide phosphorylase/polyadenylase
83	 52.79	0	98609..99199	-	196	16329254	lepB	sll0716	-	leader peptidase I
84	 53.16	0	99402..100793	+	463	16329255	me	slr0721	-	malic enzyme
85	 52.76	0	100794..101771	-	325	16329256	cysM	sll0712	-	cysteine synthase A
86	 54.85	+1	101884..102831	-	315	16329257	-	sll0711	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
87	 30.08	-2	102930..105110	-	726	16329258	-	sll0710	-	hypothetical protein
88	 30.38	-2	105151..106539	-	462	16329259	llaI.2	sll0709	-	restriction enzyme LlaI protein
89	 47.95	0	107471..108325	-	284	16329260	ksgA	sll0708	-	dimethyladenosine transferase
90	 51.43	0	108290..109201	+	303	16329261	-	slr0722	-	hypothetical protein
91	 50.00	0	109222..110313	+	363	16329262	-	slr0723	-	hypothetical protein
92	 47.45	0	110392..110724	+	110	16329263	sohA	slr0724	-	putative regulator PrlF
93	 40.29	-1	110808..111224	+	138	16329264	-	slr0725	-	hypothetical protein
94	 31.59	-2	111585..112559	+	324	16329265	-	slr0727	-	hypothetical protein
95	 51.55	0	113025..114188	+	387	16329266	-	slr0728	-	hypothetical protein
96	 50.33	0	114319..114624	+	101	16329267	-	slr0729	-	hypothetical protein
97	 49.87	0	114874..115272	+	132	16329268	-	slr0730	-	hypothetical protein
98	 52.94	0	115269..116477	+	402	16329269	-	slr0731	-	hypothetical protein
99	 54.51	+1	116518..117693	-	391	16329270	nifS	sll0704	-	NifS protein
100	 36.11	-2	117869..118336	+	155	16329271	-	slr0732	-	hypothetical protein
101	 48.92	0	118333..119532	-	399	16329272	-	sll0703	-	hypothetical protein
102	 50.89	0	119570..119962	-	130	16329273	-	sll0702	-	hypothetical protein
103	 49.47	0	120719..121660	+	313	16329274	xerC	slr0733	-	integrase-recombinase protein
104	 45.61	0	121706..121990	-	94	16329275	-	ssl1326	-	hypothetical protein
105	 51.39	0	122287..123405	+	372	16329276	-	slr0734	-	hypothetical protein
106	 36.77	-2	123501..123995	-	164	16329277	-	sll0700	-	transposase
107	 36.39	-2	123989..124348	-	119	16329278	-	sll0699	-	transposase
108	 47.79	0	124452..126443	-	663	16329279	dfr	sll0698	-	drug sensory protein A
109	 50.23	0	126639..127064	+	141	16329280	psaD	slr0737	-	photosystem I subunit II
110	 50.62	0	127186..128712	+	508	16329281	trpE	slr0738	-	anthranilate synthase component I
111	 54.35	+1	128802..129710	+	302	16329282	crtE	slr0739	-	geranylgeranyl pyrophosphate synthase
112	 51.01	0	129791..130186	+	131	16329283	-	slr0740	-	hypothetical protein
113	 49.94	0	130167..131039	-	290	16329284	-	sll0696	-	hypothetical protein
114	 51.41	0	131116..131790	+	224	16329285	phoU	slr0741	-	a negative regulator of pho regulon
115	 50.09	0	131877..132407	+	176	16329286	-	slr0742	-	hypothetical protein
116	 53.52	+1	132483..133859	+	458	16329287	nusA	slr0743	-	transcription elongation factor NusA
117	 54.90	+1	133923..134177	+	84	109150011	-	slr0743a	-	hypothetical protein
118	 55.46	+1	134437..137442	+	1001	16329288	infB	slr0744	-	translation initiation factor IF-2
119	 50.22	0	137444..138112	+	222	16329289	-	slr0236	-	hypothetical protein
120	 51.18	0	138295..140535	+	746	16329290	glgX	slr0237	-	glycogen operon protein; GlgX
121	 44.68	0	140585..141007	+	140	16329291	-	slr0238	-	hypothetical protein
122	 38.44	-1	141123..141416	-	97	16329292	-	ssl0426	-	transposase
123	 51.95	0	141648..142442	+	264	16329293	cbiF	slr0239	-	precorrin methylase
124	 53.90	+1	142559..142981	+	140	16329294	-	slr0240	-	hypothetical protein
125	 49.53	0	142981..143826	+	281	16329295	-	slr0241	-	hypothetical protein
48.22	MEAN

4.98	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.