IslandPathversion 1.0

IslandPath Analysis: Synechocystis sp. PCC 6803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.22 STD DEV: 4.98
Synechocystis sp. PCC 6803, complete genome - 1..3573470
3172 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
353	 39.39	-1	382643..382873	+	76	16329523	-	ssr1766	-	hypothetical protein
354	 54.72	+1	382949..383266	+	105	16329524	galE	slr1078	-	UDP-glucose-4-epimerase
355	 50.10	0	383300..383794	+	164	16329525	-	slr1079	-	hypothetical protein
356	 37.88	-2	384050..384247	+	65	16329526	-	ssr1768	-	hypothetical protein
357	 43.92	0	384343..384975	+	210	16329527	-	slr1081	-	hypothetical protein
358	 52.55	0	384980..385390	+	136	16329528	-	slr1082	-	hypothetical protein
359	 47.25	0	385467..386012	+	181	16329529	-	slr1083	-	hypothetical protein
360	 49.21	0	386177..386617	+	146	16329530	-	slr1084	-	hypothetical protein
361	 49.33	0	386681..387955	+	424	16329531	-	slr1085	-	hypothetical protein
362	 52.21	0	388116..389201	+	361	16329532	-	slr1087	-	hypothetical protein
363	 55.13	+1	389175..390353	-	392	16329533	-	sll1025	-	hypothetical protein
364	 51.42	0	390353..390634	-	93	16329534	-	ssl1972	-	hypothetical protein
365	 49.33	0	390905..391729	-	274	16329535	-	sll1024	-	hypothetical protein
366	 53.73	+1	391899..393104	-	401	16329536	sucC	sll1023	-	succinate--CoA ligase
367	 48.83	0	393121..393849	-	242	16329537	-	sll1022	-	hypothetical protein
368	 48.52	0	393996..396017	-	673	16329538	-	sll1021	-	hypothetical protein
369	 45.42	0	396057..396941	-	294	16329539	-	sll1020	-	hypothetical protein
370	 53.57	+1	397037..398143	+	368	16329540	obgE	slr1090	-	GTPase ObgE
371	 51.72	0	398188..398361	+	57	16329541	hliA	ssr1789	-	high light inducible protein
372	 52.33	0	398441..399214	-	257	16329542	HAGH1	sll1019	-	glyoxalase II
373	 53.02	0	399275..400600	-	441	16329543	pyrC	sll1018	-	dihydroorotase
374	 50.04	0	400720..402048	-	442	16329544	amt2	sll1017	-	ammonium/methylammonium permease
375	 49.69	0	402290..403432	+	380	16329545	-	slr1400	-	hybrid sensory kinase
376	 48.17	0	403552..404427	+	291	16329546	-	slr0670	-	hypothetical protein
377	 50.12	0	404545..410184	-	1879	16329547	nucH	sll0656	-	extracellular nuclease
378	 49.74	0	410315..414544	-	1409	16329548	-	sll0654	-	alkaline phosphatase
379	 50.19	0	414871..415404	+	177	16329549	cysC	slr0676	-	adenylylsulfate kinase
380	 53.22	+1	415562..416245	+	227	16329550	exbB	slr0677	-	biopolymer transport ExbB protein
381	 52.47	0	416356..417165	+	269	16329551	-	slr0678	-	hypothetical protein
382	 49.74	0	417201..418541	+	446	16329552	fmu/fmv	slr0679	-	Fmu and Fmv protein
383	 45.86	0	418704..419126	+	140	16329553	-	slr0680	-	hypothetical protein
384	 45.78	0	418963..420264	+	433	16329554	-	slr0681	-	hypothetical protein
385	 54.23	+1	420502..421731	+	409	16329555	hisD	slr0682	-	histidinol dehydrogenase
386	 36.36	-2	421765..422259	-	164	16329556	-	sll0651	-	transposase
387	 36.11	-2	422253..422612	-	119	16329557	-	sll0650	-	transposase
388	 47.70	0	422772..423509	-	245	16329558	-	sll0649	-	OmpR subfamily
389	 51.44	0	423490..424566	-	358	16329559	lim	sll0648	-	lipophilic protein
390	 49.29	0	424694..425464	-	256	16329560	-	sll0647	-	hypothetical protein
391	 51.56	0	425468..427738	-	756	16329561	cyaA	sll0646	-	adenylate cyclase
392	 49.87	0	427777..428544	-	255	16329562	-	sll0645	-	hypothetical protein
393	 49.60	0	428619..429614	-	331	16329563	-	sll0644	-	esterase
394	 40.28	-1	429810..430169	+	119	16329564	-	slr0686	-	hypothetical protein
395	 48.47	0	430424..431044	-	206	16329565	ureG	sll0643	-	urease accessory protein G
396	 47.51	0	431350..432795	+	481	16329566	pleD	slr0687	-	PleD gene product
397	 44.64	0	432779..434308	-	509	16329567	-	sll0641	-	hypothetical protein
398	 48.78	0	434320..436158	-	612	16329568	Sac1	sll0640	-	sulfur deprivation response regulator
399	 53.49	+1	436234..437265	+	343	16329569	-	slr0688	-	hypothetical protein
400	 44.61	0	437705..437908	+	67	16329570	-	ssr1155	-	hypothetical protein
401	 55.39	+1	437922..439118	+	398	16329571	-	slr0689	-	hypothetical protein
402	 51.04	0	439184..440437	-	417	16329572	-	sll0639	-	hypothetical protein
403	 50.47	0	440610..441986	-	458	16329573	-	sll0638	-	hypothetical protein
404	 54.75	+1	442164..443933	+	589	16329574	ycf45	slr0692	-	hypothetical protein
405	 54.46	+1	443913..444944	-	343	16329575	thiE	sll0635	-	thiamine-phosphate pyrophosphorylase
406	 53.47	+1	445061..445924	-	287	16329576	btpA	sll0634	-	BtpA
407	 51.72	0	446230..446751	+	173	16329577	-	slr0695	-	hypothetical protein
408	 48.65	0	446807..447694	+	295	16329578	-	slr1590	-	hypothetical protein
409	 48.48	0	447831..448979	+	382	16329579	-	slr1591	-	hypothetical protein
410	 52.97	0	449166..450041	+	291	16329580	-	slr1592	-	hypothetical protein
411	 49.56	0	450740..451651	+	303	16329581	-	slr1593	-	hypothetical protein
412	 41.84	-1	451735..452922	+	395	16329582	-	slr1594	-	PatA subfamily protein
413	 42.42	-1	453214..454446	+	410	16329583	-	slr1595	-	Na/H antiporter
414	 53.12	0	454712..456586	-	624	16329584	-	sll1516	-	hypothetical protein
415	 41.72	-1	456975..458297	+	440	16329585	pxcA	slr1596	-	proton extrusion protein PcxA
416	 51.78	0	458408..458857	-	149	16329586	-	sll1515	-	hypothetical protein
417	 46.04	0	459200..460096	+	298	16329587	-	slr1597	-	hypothetical protein
418	 48.07	0	460250..460690	-	146	16329588	hsp17	sll1514	-	putative chaperone
419	 52.64	0	460956..461960	-	334	16329589	ccsA	sll1513	-	c-type cytochrome synthesis protein
420	 48.77	0	462147..462554	-	135	16329590	-	sll1512	-	hypothetical protein
421	 49.20	0	462809..463678	+	289	16329591	lipA	slr1598	-	lipoyl synthase
422	 44.98	0	463690..464307	-	205	16329592	-	sll1511	-	hypothetical protein
423	 39.14	-1	464437..465177	-	246	16329593	-	sll1510	-	hypothetical protein
424	 45.15	0	465232..465561	-	109	16329594	ycf20	sll1509	-	hypothetical protein
425	 46.38	0	465927..466493	+	188	16329595	-	slr1599	-	hypothetical protein
426	 49.56	0	466588..467037	+	149	16329596	-	slr1600	-	hypothetical protein
427	 50.00	0	467201..467296	+	31	16329597	psaM	smr0005	-	photosystem I reaction center subunit XII
428	 48.94	0	467436..467813	+	125	16329598	-	slr1601	-	hypothetical protein
429	 51.02	0	467836..468666	-	276	16329599	lpxC	sll1508	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
430	 49.08	0	469001..469546	-	181	16329600	-	sll1507	-	hypothetical protein
431	 50.26	0	469592..470914	+	440	16329601	-	slr1603	-	hypothetical protein
432	 52.24	0	471080..472930	+	616	16329602	ftsH	slr1604	-	cell division protein; FtsH
433	 46.99	0	473414..473662	+	82	16329603	-	ssr2699	-	transposase
434	 36.90	-2	473953..474204	-	83	16329604	vapC	ssl2923	-	virulence associated protein C
435	 34.21	-2	474205..474432	-	75	16329605	vapB	ssl2922	-	virulence associated protein B
436	 32.88	-2	474789..475007	-	72	16329606	-	ssl2920	-	hypothetical protein
437	 37.20	-2	475110..475445	-	111	16329607	-	sll1505	-	hypothetical protein
438	 37.54	-2	475435..475743	-	102	16329608	-	sll1504	-	hypothetical protein
439	 32.15	-2	475873..477399	-	508	16329609	-	sll1503	-	hypothetical protein
440	 50.59	0	477668..482320	-	1550	16329610	gltB	sll1502	-	glutamate synthase (ferredoxin)
441	 43.83	0	482542..482703	+	53	16329611	-	ssr2708	-	hypothetical protein
442	 49.80	0	482945..483199	+	84	16329612	-	ssr2711	-	hypothetical protein
443	 52.14	0	483326..484564	+	412	16329613	gdhB	slr1608	-	glucose dehydrogenase-B
444	 49.90	0	484799..486247	-	482	16329614	cbiA	sll1501	-	cobyrinic acid a,c-diamide synthase
445	 52.34	0	486244..487353	-	369	16329615	-	sll1500	-	hypothetical protein
446	 50.45	0	487287..489377	+	696	16329616	-	slr1609	-	long-chain-fatty-acid CoA ligase
447	 49.79	0	489722..490888	+	388	16329617	-	slr1041	-	PatA subfamily protein
448	 50.00	0	491006..491449	+	147	16329618	-	slr1042	-	CheY family protein
449	 52.84	0	491496..492059	+	187	16329619	-	slr1043	-	hypothetical protein
450	 53.49	+1	492130..494739	+	869	16329620	mcpA	slr1044	-	methyl-accepting chemotaxis protein
451	 49.75	0	494828..495619	+	263	16329621	-	slr1045	-	hypothetical protein
452	 45.41	0	495626..496006	+	126	16329622	-	slr1046	-	hypothetical protein
48.22	MEAN

4.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.