IslandPathversion 1.0

IslandPath Analysis: Synechocystis sp. PCC 6803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.22 STD DEV: 4.98
Synechocystis sp. PCC 6803, complete genome - 1..3573470
3172 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
261	 48.13	0	287929..289104	-	391	16329431	-	sll1200	-	hypothetical protein
262	 53.15	0	289322..290845	+	507	16329432	-	slr1293	-	hypothetical protein
263	 50.55	0	290902..291174	+	90	16329433	ycf19	ssr2142	-	hypothetical protein
264	 51.99	0	291626..292708	+	360	16329434	sufA	slr1295	-	iron transport protein
265	 52.30	0	292790..293485	-	231	16329435	trmD	sll1198	-	tRNA (guanine-N(1)-)-methyltransferase
266	 47.70	0	293496..293669	-	57	16329436	-	ssl2384	-	hypothetical protein
267	 53.22	+1	293878..294963	-	361	16329437	pfkA	sll1196	-	phosphofructokinase
268	 45.94	0	295076..297343	+	755	16329438	-	slr1298	-	hypothetical protein
269	 44.19	0	297493..297888	-	131	16329439	psbU	sll1194	-	photosystem II complex extrinsic protein precursor U
270	 47.99	0	298083..298580	-	165	16329440	-	sll1193	-	hypothetical protein
271	 49.49	0	299522..300883	+	453	16329441	-	slr1299	-	UDP-glucose dehydrogenase
272	 53.65	+1	301110..302354	+	414	16329442	ubiH	slr1300	-	2-octaprenyl-6-methoxyphenyl hydroxylase
273	 50.12	0	302367..302789	-	140	16329443	-	sll1192	-	hypothetical protein
274	 51.60	0	302786..303190	-	134	16329444	-	sll1191	-	hypothetical protein
275	 55.56	+1	303424..303621	+	65	16329445	-	ssr2153	-	hypothetical protein
276	 48.57	0	303939..305546	+	535	16329446	-	slr1301	-	hypothetical protein
277	 48.70	0	305595..306824	+	409	16329447	-	slr1302	-	hypothetical protein
278	 50.45	0	306844..308076	+	410	16329448	-	slr1303	-	hypothetical protein
279	 51.19	0	308114..309418	-	434	16329449	glcE	sll1189	-	glycolate oxidase subunit; GlcE
280	 44.31	0	309649..312171	+	840	16329450	-	slr1305	-	regulatory components of sensory transduction system
281	 52.54	0	312258..313715	+	485	16329451	-	slr1306	-	hypothetical protein
282	 45.45	0	313705..314199	-	164	16329452	-	sll1188	-	hypothetical protein
283	 44.37	0	314255..315106	-	283	16329453	lgt	sll1187	-	prolipoprotein diacylglyceryl transferase
284	 44.55	0	315134..315784	-	216	16329454	-	sll1186	-	hypothetical protein
285	 51.12	0	315882..316904	-	340	16329455	hemF	sll1185	-	coproporphyrinogen III oxidase
286	 50.48	0	317127..317849	-	240	16329456	ho1	sll1184	-	heme oxygenase
287	 49.49	0	317984..318571	+	195	16329457	-	slr1307	-	hypothetical protein
288	 48.95	0	318661..318897	+	78	16329458	rpmB	ssr1604	-	50S ribosomal protein L28
289	 48.68	0	319096..320529	+	477	16329459	-	slr0962	-	hypothetical protein
290	 44.34	0	320785..321447	-	220	16329460	-	sll0943	-	hypothetical protein
291	 52.57	0	321699..323606	+	635	16329461	sir	slr0963	-	sulfite reductase subunit beta
292	 53.51	+1	323805..324731	+	308	16329462	-	slr0964	-	hypothetical protein
293	 51.62	0	324831..326006	+	391	16329463	dnaN	slr0965	-	DNA polymerase III subunit beta
294	 52.33	0	326150..326944	+	264	16329464	trpA	slr0966	-	tryptophan synthase subunit alpha
295	 49.67	0	327100..327552	+	150	16329465	-	slr0967	-	hypothetical protein
296	 43.39	0	327604..327981	-	125	16329466	-	sll0939	-	hypothetical protein
297	 49.40	0	328006..329181	-	391	16329467	-	sll0938	-	succinyldiaminopimelate transaminase
298	 38.33	-1	329222..329521	-	99	16329468	-	ssl1792	-	hypothetical protein
299	 52.12	0	329555..331060	-	501	16329469	-	sll0936	-	hypothetical protein
300	 50.64	0	331144..333027	+	627	16329470	cbiH	slr0969	-	precorrin methylase
301	 55.31	+1	333130..334485	+	451	16329471	-	slr0971	-	hypothetical protein
302	 54.45	+1	334568..335623	-	351	16329472	ccmA	sll0934	-	3-deoxy-7-phosphoheptulonate synthase
303	 53.25	+1	335819..336295	-	158	16329473	-	sll0933	-	hypothetical protein
304	 50.37	0	336313..336582	-	89	16329474	rps15	ssl1784	-	30S ribosomal protein S15
305	 50.30	0	336747..337760	-	337	16329475	-	sll0932	-	hypothetical protein
306	 54.14	+1	337861..338331	-	156	16329476	-	sll0931	-	hypothetical protein
307	 47.47	0	338503..339096	-	197	16329477	-	sll0930	-	hypothetical protein
308	 47.74	0	339140..339625	-	161	16329478	apcD	sll0928	-	allophycocyanin-B
309	 52.18	0	339737..340999	-	420	161344769	metX	sll0927	-	S-adenosylmethionine synthetase
310	 48.36	0	341135..342139	-	334	16329480	-	sll0926	-	tRNA-dihydrouridine synthase A
311	 47.62	0	342151..342759	-	202	16329481	-	sll0925	-	hypothetical protein
312	 51.12	0	343026..343559	+	177	16329482	infC	slr0974	-	translation initiation factor IF-3
313	 51.28	0	343863..344720	+	285	16329483	-	slr0975	-	hypothetical protein
314	 50.45	0	344744..345298	-	184	16329484	-	sll0924	-	hypothetical protein
315	 49.80	0	345536..347806	-	756	16329485	epsB	sll0923	-	exopolysaccharide export protein
316	 47.86	0	348384..348734	-	116	16329486	-	sll0922	-	hypothetical protein
317	 49.66	0	348701..349429	+	242	16329487	-	slr0976	-	hypothetical protein
318	 44.52	0	349468..350298	+	276	16329488	-	slr0977	-	ABC transporter
319	 49.51	0	350509..350916	+	135	16329489	-	slr0978	-	hypothetical protein
320	 45.83	0	351036..351467	+	143	16329490	-	slr0980	-	hypothetical protein
321	 44.68	0	351538..352101	+	187	16329491	-	slr0981	-	hypothetical protein
322	 46.48	0	352263..353555	+	430	16329492	rfbB	slr0982	-	ABC transporter
323	 42.41	-1	353552..354322	+	256	16329493	rfbF	slr0983	-	alpha-D-glucose-1-phosphate cytidylyltransferase
324	 49.95	0	354323..355405	+	360	16329494	rfbG	slr0984	-	CDP-glucose-4,6-dehydratase
325	 49.47	0	355424..355993	+	189	16329495	rfbC	slr0985	-	dTDP-6-deoxy-L-mannose-dehydrogenase
326	 46.01	0	355909..357210	+	433	16329496	-	slr1610	-	hypothetical protein
327	 42.38	-1	357245..357697	+	150	16329497	-	slr1611	-	hypothetical protein
328	 42.74	-1	357748..358608	+	286	16329498	-	slr1612	-	hypothetical protein
329	 36.38	-2	358760..359350	+	196	16329499	-	slr1613	-	hypothetical protein
330	 36.93	-2	359668..359973	+	101	16329500	-	slr1614	-	hypothetical protein
331	 46.26	0	360030..361166	+	378	16329501	rfbE	slr1615	-	perosamine synthetase
332	 38.79	-1	361163..362188	+	341	16329502	-	slr1616	-	putative carbamoyl phosphate synthase large subunit
333	 37.70	-2	362185..363420	+	411	16329503	-	slr1617	-	hypothetical protein
334	 40.59	-1	363433..364218	+	261	16329504	-	slr1618	-	hypothetical protein
335	 45.20	0	364247..364996	+	249	16329505	-	slr1619	-	hypothetical protein
336	 41.38	-1	365274..365621	+	115	16329506	-	slr1062	-	hypothetical protein
337	 30.72	-2	365716..367785	+	689	16329507	-	slr1063	-	hypothetical protein
338	 38.68	-1	367807..368910	+	367	16329508	rfbU	slr1064	-	mannosyltransferase B
339	 36.60	-2	369149..370219	+	356	16329509	-	slr1065	-	hypothetical protein
340	 33.91	-2	370285..371490	+	401	16329510	-	slr1066	-	hypothetical protein
341	 41.15	-1	371487..372509	+	340	16329511	galE	slr1067	-	UDP-glucose-4-epimerase
342	 32.49	-2	372811..373167	+	118	16329512	-	slr1068	-	hypothetical protein
343	 32.85	-2	373231..373644	+	137	16329513	-	slr1069	-	hypothetical protein
344	 34.97	-2	373654..374511	+	285	16329514	-	slr1070	-	hypothetical protein
345	 34.20	-2	374646..375452	+	268	16329515	-	slr1071	-	hypothetical protein
346	 44.34	0	375470..376432	+	320	16329516	yefA	slr1072	-	GDP-D-mannose dehydratase
347	 36.97	-2	376485..377639	+	384	16329517	-	slr1073	-	hypothetical protein
348	 33.63	-2	377620..378951	+	443	16329518	-	slr1074	-	hypothetical protein
349	 36.51	-2	379065..379913	+	282	16329519	-	slr1075	-	transposase
350	 40.23	-1	380030..381175	+	381	16329520	-	slr1076	-	hypothetical protein
351	 48.06	0	381177..382337	+	386	16329521	-	slr1077	-	hypothetical protein
352	 39.22	-1	382392..382646	+	84	16329522	-	ssr1765	-	hypothetical protein
353	 39.39	-1	382643..382873	+	76	16329523	-	ssr1766	-	hypothetical protein
354	 54.72	+1	382949..383266	+	105	16329524	galE	slr1078	-	UDP-glucose-4-epimerase
355	 50.10	0	383300..383794	+	164	16329525	-	slr1079	-	hypothetical protein
356	 37.88	-2	384050..384247	+	65	16329526	-	ssr1768	-	hypothetical protein
357	 43.92	0	384343..384975	+	210	16329527	-	slr1081	-	hypothetical protein
358	 52.55	0	384980..385390	+	136	16329528	-	slr1082	-	hypothetical protein
359	 47.25	0	385467..386012	+	181	16329529	-	slr1083	-	hypothetical protein
360	 49.21	0	386177..386617	+	146	16329530	-	slr1084	-	hypothetical protein
48.22	MEAN

4.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.