IslandPathversion 1.0

IslandPath Analysis: Synechocystis sp. PCC 6803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.22 STD DEV: 4.98
Synechocystis sp. PCC 6803, complete genome - 1..3573470
3172 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2935	 52.79	0	3285051..3287168	-	705	16332101	-	sll1336	-	hypothetical protein
2936	 52.54	0	3287354..3289264	+	636	16332102	-	slr1428	-	hypothetical protein
2937	 47.25	0	3289256..3290785	-	509	16332103	-	sll1334	-	hypothetical protein
2938	 51.03	0	3291097..3291966	+	289	16332104	-	slr1429	-	hypothetical protein
2939	 52.68	0	3292177..3292884	-	235	16332105	-	sll1333	-	hypothetical protein
2940	 53.50	+1	3293078..3294505	+	475	16332106	-	slr1431	-	hypothetical protein
2941	 51.13	0	3294498..3295250	-	250	16332107	-	sll1330	-	OmpR subfamily
2942	 52.20	0	3295580..3296443	-	287	16332108	-	sll1329	-	monophosphatase
2943	 52.54	0	3296462..3297247	+	261	16332109	-	slr1451	-	hypothetical protein
2944	 45.42	0	3297312..3298097	-	261	16332110	-	sll1367	-	hypothetical protein
2945	 47.69	0	3298326..3299384	+	352	16332111	sbpA	slr1452	-	sulfate binding protein; SbpA
2946	 46.94	0	3299421..3299714	+	97	16332112	-	ssr2439	-	hypothetical protein
2947	 44.02	0	3299716..3300576	+	286	16332113	cysT	slr1453	-	sulfate transport system permease protein
2948	 44.89	0	3300563..3301393	+	276	16332114	cysW	slr1454	-	sulfate transport system permease protein
2949	 44.19	0	3301555..3302622	+	355	16332115	cysA	slr1455	-	sulfate transport system permease protein
2950	 48.67	0	3302812..3303339	+	175	16332116	-	slr1456	-	general secretion pathway protein G
2951	 51.17	0	3303481..3304680	+	399	16332117	chrA	slr1457	-	chromate transport protein
2952	 51.96	0	3304872..3305381	+	169	16332118	apcF	slr1459	-	phycobilisome core component
2953	 52.34	0	3305654..3308773	-	1039	16332119	-	sll1366	-	Snf2/Rad54 family helicase
2954	 47.74	0	3308878..3309474	+	198	16332120	-	slr1461	-	hypothetical protein
2955	 48.95	0	3309530..3311431	-	633	16332121	-	sll1365	-	hypothetical protein
2956	 50.12	0	3311660..3313345	+	561	16332122	-	slr1462	-	hypothetical protein
2957	 51.25	0	3313667..3315754	+	695	16332123	fus	slr1463	-	elongation factor G
2958	 50.00	0	3315938..3316735	+	265	16332124	-	slr1464	-	hypothetical protein
2959	 47.19	0	3317363..3317593	-	76	16332125	-	ssl2667	-	NifU protein
2960	 50.00	0	3317701..3318804	-	367	16332126	ilvC	sll1363	-	ketol-acid reductoisomerase
2961	 48.96	0	3318829..3319212	+	127	16332127	-	slr0651	-	hypothetical protein
2962	 52.40	0	3319281..3320051	+	256	16332128	hisA	slr0652	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
2963	 51.68	0	3320075..3321736	-	553	16332129	nadB	sll0631	-	L-aspartate oxidase
2964	 48.86	0	3321844..3322281	-	145	16332130	-	sll0630	-	hypothetical protein
2965	 48.58	0	3322377..3322763	-	128	16332131	psaK	sll0629	-	photosystem I subunit X
2966	 49.37	0	3323275..3324552	+	425	16332132	rpoDI	slr0653	-	RNA polymerase sigma factor RpoD
2967	 48.69	0	3330281..3331042	+	253	16332133	-	slr0654	-	hypothetical protein
2968	 50.64	0	3331045..3331587	+	180	16332134	-	slr0655	-	hypothetical protein
2969	 43.19	-1	3331625..3332821	+	398	16332135	-	slr0656	-	hypothetical protein
2970	 53.36	+1	3333244..3335046	+	600	16332136	lysC	slr0657	-	aspartate kinase
2971	 46.89	0	3335247..3336242	+	331	16332137	-	slr0658	-	hypothetical protein
2972	 51.77	0	3336407..3338548	+	713	16332138	prlC	slr0659	-	oligopeptidase A
2973	 55.10	+1	3338682..3339485	+	267	16332139	proC	slr0661	-	pyrroline-5-carboxylate reductase
2974	 49.80	0	3339500..3340969	-	489	16332140	lim17	sll0626	-	LIM17 protein
2975	 48.23	0	3341166..3341843	-	225	16332141	-	sll0625	-	hypothetical protein
2976	 42.45	-1	3342125..3342442	-	105	16332142	-	sll0624	-	hypothetical protein
2977	 49.09	0	3342857..3344944	+	695	16332143	speA	slr0662	-	arginine decarboxylase
2978	 52.47	0	3345027..3345815	-	262	16332144	-	sll0623	-	hypothetical protein
2979	 49.74	0	3345861..3346817	-	318	16332145	nadA	sll0622	-	quinolinate synthetase
2980	 51.67	0	3346910..3347656	-	248	16332146	dsbD	sll0621	-	thiol:disulfide interchange protein; DsbD
2981	 38.31	-1	3347941..3348201	+	86	16332147	-	ssr1114	-	hypothetical protein
2982	 35.26	-2	3348191..3348553	+	120	16332148	-	slr0664	-	hypothetical protein
2983	 52.32	0	3348690..3351296	+	868	16332149	-	slr0665	-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
2984	 45.05	0	3351526..3352353	+	275	16332150	-	slr0666	-	hypothetical protein
2985	 33.14	-2	3352682..3353203	+	173	16332151	-	slr0667	-	hypothetical protein
2986	 31.47	-2	3353196..3353732	+	178	16332152	-	slr0668	-	hypothetical protein
2987	 49.97	0	3354192..3358862	-	1556	16332153	gltB	sll1499	-	ferredoxin-dependent glutamate synthase
2988	 41.72	-1	3359578..3360579	+	333	16332154	ddh	slr1556	-	D-lactate dehydrogenase
2989	 53.42	+1	3360732..3361886	-	384	161344749	carA	sll1498	-	carbamoyl phosphate synthase small subunit
2990	 52.43	0	3362057..3363166	+	369	16332156	-	slr1557	-	hypothetical protein
2991	 50.67	0	3363266..3365797	-	843	16332157	-	sll1496	-	mannose-1-phosphate guanyltransferase
2992	 46.31	0	3365944..3367137	-	397	16332158	-	sll1495	-	hypothetical protein
2993	 52.23	0	3367417..3368289	+	290	16332159	aroE	slr1559	-	shikimate 5-dehydrogenase
2994	 53.48	+1	3368416..3369621	+	401	16332160	hisZ	slr1560	-	ATP phosphoribosyltransferase regulatory subunit
2995	 52.73	0	3369699..3370028	+	109	16332161	grxC	slr1562	-	glutaredoxin
2996	 52.93	0	3370059..3370946	+	295	16332162	-	slr1563	-	hypothetical protein
2997	 49.68	0	3371247..3372023	+	258	16332163	rpoF	slr1564	-	RNA polymerase sigma factor SigF
2998	 50.00	0	3372152..3372493	+	113	16332164	-	slr1565	-	hypothetical protein
2999	 50.67	0	3372502..3373689	+	395	16332165	-	slr1566	-	hypothetical protein
3000	 50.24	0	3373719..3374765	-	348	16332166	-	sll1491	-	beta transducin-like protein
3001	 45.56	0	3375291..3377588	+	765	16332167	-	slr1567	-	hypothetical protein
3002	 49.64	0	3377869..3378279	+	136	16332168	-	slr1568	-	hypothetical protein
3003	 54.40	+1	3378247..3379086	-	279	16332169	-	sll1489	-	hypothetical protein
3004	 54.65	+1	3379102..3379767	-	221	16332170	-	sll1488	-	hypothetical protein
3005	 51.36	0	3380130..3380789	+	219	16332171	-	slr1570	-	hypothetical protein
3006	 49.63	0	3380809..3381489	+	226	16332172	-	slr1571	-	hypothetical protein
3007	 47.37	0	3381543..3382397	+	284	16332173	-	slr1572	-	hypothetical protein
3008	 52.58	0	3382575..3383369	+	264	16332174	-	slr1573	-	hypothetical protein
3009	 42.96	-1	3383577..3383846	-	89	16332175	-	ssl2874	-	hypothetical protein
3010	 48.61	0	3384151..3385590	+	479	16332176	-	slr1575	-	hypothetical protein
3011	 51.09	0	3385642..3385962	+	106	16332177	-	slr1576	-	hypothetical protein
3012	 51.94	0	3386005..3386493	+	162	16332178	-	slr1577	-	hypothetical protein
3013	 49.73	0	3386777..3388465	+	562	16332179	-	slr1579	-	hypothetical protein
3014	 50.50	0	3388694..3389491	-	265	16332180	-	sll1486	-	hypothetical protein
3015	 50.92	0	3389395..3389883	-	162	16332181	-	sll1485	-	hypothetical protein
3016	 52.76	0	3390028..3391602	-	524	16332182	ndh	sll1484	-	NADH dehydrogenase
3017	 50.64	0	3391645..3392187	-	180	16332183	-	sll1483	-	transforming growth factor induced protein
3018	 50.17	0	3392302..3393453	-	383	16332184	-	sll1482	-	ABC-transporter DevC-like protein
3019	 53.10	0	3393495..3394850	-	451	16332185	-	sll1481	-	ABC-transporter DevB-like protein
3020	 53.99	+1	3394954..3395718	-	254	16332186	devB	sll1479	-	6-phosphogluconolactonase
3021	 51.26	0	3395763..3398261	-	832	16332187	-	sll1477	-	hypothetical protein
3022	 42.07	-1	3398409..3398717	-	102	16332188	-	sll1476	-	hypothetical protein
3023	 50.69	0	3398899..3399261	+	120	16332189	-	slr1583	-	hypothetical protein
3024	 42.28	-1	3399457..3400350	-	297	16332190	-	sll1475	-	sensory transduction histidine kinase
3025	 32.35	-2	3400402..3401418	-	338	16332191	-	sll1474	-	transposase
3026	 42.46	-1	3401456..3402901	-	481	16332192	-	sll1473	-	putative chromatic adaptation sensor receptor protein
3027	 37.39	-2	3402929..3403372	-	147	16332193	-	sll1472	-	hypothetical protein
3028	 46.27	0	3403557..3404306	-	249	16332194	cpcG	sll1471	-	phycobilisome rod-core linker polypeptide; CpcG
3029	 48.23	0	3404545..3405249	+	234	16332195	-	slr1584	-	OmpR subfamily
3030	 37.47	-2	3405462..3405848	+	128	16332196	-	slr1585	-	transposase
3031	 34.89	-2	3405991..3406311	+	106	16332197	-	slr1586	-	transposase
3032	 53.16	0	3406416..3407822	-	468	16332198	leuC	sll1470	-	isopropylmalate isomerase large subunit
3033	 47.55	0	3408051..3409316	+	421	16332199	-	slr1588	-	regulatory components of sensory transduction system
3034	 50.35	0	3409355..3410623	+	422	16332200	stpA	slr0746	-	glucosylglycerolphosphate phosphatase
48.22	MEAN

4.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.