IslandPathversion 1.0

IslandPath Analysis: Synechocystis sp. PCC 6803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.22 STD DEV: 4.98
Synechocystis sp. PCC 6803, complete genome - 1..3573470
3172 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2779	 47.32	0	3098729..3101566	-	945	16331945	-	sll0672	-	cation-transporting ATPase; E1-E2 ATPase
2780	 34.38	-2	3101820..3102962	-	380	16331946	-	sll0671	-	magnesium and cobalt transport protein
2781	 40.00	-1	3103070..3103579	-	169	16331947	-	sll0670	-	hypothetical protein
2782	 43.30	0	3103784..3104104	-	106	16331948	-	sll0669	-	hypothetical protein
2783	 44.31	0	3104142..3107102	+	986	16331949	polA	slr0707	-	DNA polymerase I
2784	 50.62	0	3107285..3108493	+	402	16331950	-	slr0708	-	hypothetical protein
2785	 34.38	-2	3108643..3109023	-	126	16331951	-	sll0668	-	transposase
2786	 35.00	-2	3109036..3109695	-	219	16331952	-	sll0667	-	transposase
2787	 45.00	0	3109733..3110152	-	139	16331953	-	sll0666	-	transposase
2788	 44.06	0	3110216..3110560	-	114	16331954	-	sll0665	-	transposase
2789	 32.03	-2	3110910..3111830	-	306	16331955	-	sll0664	-	hypothetical protein
2790	 50.13	0	3111996..3112388	+	130	16331956	-	slr0709	-	hypothetical protein
2791	 50.66	0	3112517..3113803	+	428	16331957	gdhA	slr0710	-	glutamate dehydrogenase (NADP+)
2792	 47.34	0	3113874..3114287	+	137	16331958	-	slr0711	-	hypothetical protein
2793	 48.61	0	3114479..3115447	+	322	16331959	-	slr0712	-	hypothetical protein
2794	 51.00	0	3115572..3115973	-	133	16331960	-	sll0662	-	ferredoxin
2795	 48.84	0	3115973..3116359	-	128	16331961	ycf35	sll0661	-	Ycf35
2796	 53.09	0	3116440..3116682	-	80	16331962	-	ssl1263	-	hypothetical protein
2797	 50.86	0	3117042..3118091	-	349	16331963	pdxA	sll0660	-	4-hydroxythreonine-4-phosphate dehydrogenase
2798	 45.05	0	3118192..3118302	+	36	16331964	petM	smr0003	-	cytochrome b6-f complex subunit; PetM
2799	 50.93	0	3118391..3119515	+	374	16331965	tgt	slr0713	-	queuine tRNA-ribosyltransferase
2800	 42.57	-1	3119608..3121176	-	522	16331966	-	sll0659	-	hypothetical protein
2801	 39.80	-1	3121193..3121687	-	164	16331967	-	sll0658	-	hypothetical protein
2802	 40.00	-1	3121684..3121953	-	89	16331968	-	ssl1255	-	hypothetical protein
2803	 49.91	0	3121972..3123069	-	365	16331969	mraY	sll0657	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
2804	 48.38	0	3123182..3125035	+	617	16331970	-	slr0765	-	hypothetical protein
2805	 45.80	0	3125045..3126199	-	384	16331971	pfkA	sll0745	-	phosphofructokinase
2806	 45.35	0	3126311..3127342	-	343	16331972	-	sll0744	-	dihydroorotate dehydrogenase 2
2807	 32.71	-2	3127364..3127846	-	160	16331973	-	sll0743	-	hypothetical protein
2808	 39.56	-1	3127864..3128313	-	149	16331974	-	sll0742	-	hypothetical protein
2809	 51.25	0	3128387..3131986	-	1199	16331975	nifJ	sll0741	-	pyruvate oxidoreductase
2810	 39.97	-1	3132577..3133284	-	235	16331976	-	sll0740	-	hypothetical protein
2811	 49.40	0	3133291..3135138	-	615	16331977	-	sll0739	-	ABC transporter
2812	 47.36	0	3135185..3135997	-	270	16331978	modA	sll0738	-	molybdate-binding periplasmic protein
2813	 47.02	0	3136019..3138604	-	861	16331979	-	sll0737	-	hypothetical protein
2814	 49.84	0	3138917..3139855	-	312	16331980	-	sll0048	-	hypothetical protein
2815	 44.55	0	3140045..3140356	-	103	16331981	-	sll0047	-	hypothetical protein
2816	 51.88	0	3140307..3140678	+	123	16331982	-	slr0022	-	hypothetical protein
2817	 49.01	0	3140713..3142875	-	720	16331983	sps	sll0045	-	sucrose phosphate synthase
2818	 45.85	0	3142957..3143571	+	204	16331984	-	slr0023	-	hypothetical protein
2819	 49.79	0	3143696..3144181	-	161	16331985	-	sll0044	-	hypothetical protein
2820	 55.29	+1	3144213..3148421	-	1402	16331986	-	sll0043	-	CheA like protein
2821	 54.07	+1	3148438..3148929	-	163	16331987	tar	sll0042	-	methyl-accepting chemotaxis protein II
2822	 53.81	+1	3148975..3151977	-	1000	16331988	-	sll0041	-	tsr or; CheD
2823	 53.01	0	3152239..3152787	-	182	16331989	-	sll0040	-	hypothetical protein
2824	 44.44	0	3152955..3153314	-	119	16331990	-	sll0039	-	CheY family protein
2825	 52.44	0	3153452..3154660	-	402	16331991	-	sll0038	-	PatA subfamily protein
2826	 48.66	0	3154910..3156664	+	584	16331992	-	slr0031	-	hypothetical protein
2827	 49.24	0	3156760..3157677	+	305	16331993	ilvE	slr0032	-	branched-chain amino acid aminotransferase
2828	 53.02	0	3157734..3158048	+	104	16331994	-	slr0033	-	hypothetical protein
2829	 51.14	0	3158106..3159116	-	336	16331995	-	sll0037	-	hypothetical protein
2830	 50.77	0	3159350..3160651	-	433	16331996	-	sll0036	-	methylglyoxal synthase
2831	 51.97	0	3160717..3161886	+	389	16331997	aspC	slr0036	-	aspartate aminotransferase
2832	 52.12	0	3161899..3162675	-	258	16331998	-	sll0034	-	hypothetical protein
2833	 52.06	0	3162738..3164243	-	501	16331999	-	sll0033	-	hypothetical protein
2834	 51.68	0	3164404..3165591	-	395	16332000	-	sll0031	-	hypothetical protein
2835	 46.87	0	3166050..3166448	+	132	16332001	-	slr0038	-	hypothetical protein
2836	 50.93	0	3166607..3167680	+	357	16332002	-	slr0039	-	hypothetical protein
2837	 42.84	-1	3167887..3168801	-	304	16332003	cmpR	sll0030	-	CmpR
2838	 48.79	0	3169054..3170412	+	452	16332004	cmpA	slr0040	-	bicarbonate transporter
2839	 46.03	0	3170475..3171317	+	280	16332005	cmpB	slr0041	-	hypothetical protein
2840	 50.49	0	3171428..3173158	+	576	16332006	-	slr0042	-	hypothetical protein
2841	 51.65	0	3173335..3175338	+	667	16332007	nrtC	slr0043	-	nitrate transport protein; NrtC
2842	 51.00	0	3175411..3176259	+	282	16332008	nrtD	slr0044	-	nitrate transport protein; NrtD
2843	 48.88	0	3176543..3178066	-	507	16332009	ndhD	sll0027	-	NAD(P)H-quinone oxidoreductase subunit D4
2844	 50.18	0	3178231..3180135	-	634	16332010	ndhF	sll0026	-	NAD(P)H-quinone oxidoreductase subunit F
2845	 49.05	0	3180380..3181537	-	385	16332011	-	sll0518	-	hypothetical protein
2846	 53.27	+1	3181708..3182013	-	101	16332012	rbpA	sll0517	-	RNA binding protein
2847	 50.65	0	3182315..3183007	+	230	16332013	chlM	slr0525	-	Mg-protoporphyrin IX methyl transferase
2848	 54.79	+1	3183014..3183796	+	260	16332014	panB	slr0526	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
2849	 52.45	0	3183756..3184571	+	271	16332015	exsB	slr0527	-	ExsB protein
2850	 54.61	+1	3184733..3186250	+	505	16332016	murE	slr0528	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
2851	 51.23	0	3186379..3188043	-	554	16332017	-	sll0514	-	hypothetical protein
2852	 50.32	0	3188483..3189748	+	421	16332018	-	slr0529	-	hypothetical protein
2853	 46.07	0	3189929..3190768	+	279	16332019	-	slr0530	-	membrane bound sugar transport protein
2854	 47.60	0	3190768..3191664	+	298	16332020	-	slr0531	-	membrane bound sugar transport protein
2855	 52.40	0	3191661..3192494	-	277	16332021	-	sll0513	-	hypothetical protein
2856	 51.81	0	3192683..3193900	+	405	16332022	-	slr0533	-	sensory transduction histidine kinase
2857	 50.51	0	3193999..3196542	+	847	16332023	slt	slr0534	-	soluble lytic transglycosylase
2858	 50.98	0	3196783..3198624	+	613	16332024	-	slr0535	-	serine proteinase
2859	 51.19	0	3198731..3199783	+	350	16332025	hemE	slr0536	-	uroporphyrinogen decarboxylase
2860	 45.10	0	3199930..3200838	-	302	16332026	-	sll0509	-	AP-4-A phosphorylase II
2861	 44.44	0	3200940..3201452	-	170	16332027	-	sll0508	-	hypothetical protein
2862	 50.50	0	3201688..3202689	+	333	16332028	-	slr0537	-	hypothetical protein
2863	 43.13	-1	3202699..3203862	-	387	16332029	-	sll0507	-	magnesium and cobalt transport protein
2864	 50.80	0	3203994..3204743	-	249	16332030	-	sll0506	-	hypothetical protein
2865	 51.97	0	3204740..3205651	-	303	16332031	-	sll0505	-	hypothetical protein
2866	 52.84	0	3205694..3207103	-	469	16332032	lysA	sll0504	-	diaminopimelate decarboxylase
2867	 45.96	0	3207272..3208696	-	474	16332033	-	sll0503	-	hypothetical protein
2868	 44.44	0	3208698..3210452	-	584	16332034	argS	sll0502	-	arginyl-tRNA synthetase
2869	 41.48	-1	3210650..3211606	-	318	16332035	-	sll0501	-	hypothetical protein
2870	 50.21	0	3211808..3212518	+	236	16332036	-	slr0541	-	hypothetical protein
2871	 50.25	0	3212598..3213194	+	198	16332037	clpP	slr0542	-	ATP-dependent protease; ClpP
2872	 52.30	0	3213272..3214510	+	412	16332038	trpB	slr0543	-	tryptophan synthase subunit beta
2873	 45.80	0	3214581..3217427	-	948	16332039	-	sll0499	-	hypothetical protein
2874	 51.06	0	3217855..3218655	+	266	16332040	-	slr0544	-	ABC transporter
2875	 45.70	0	3218679..3219131	-	150	16332041	-	sll0498	-	hypothetical protein
2876	 50.72	0	3219158..3219985	-	275	16332042	-	sll0497	-	hypothetical protein
2877	 50.48	0	3220162..3221106	+	314	16332043	-	slr0545	-	auxin-induced protein
2878	 45.49	0	3221251..3222435	-	394	16332044	-	sll0496	-	hypothetical protein
48.22	MEAN

4.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.