IslandPathversion 1.0

IslandPath Analysis: Synechocystis sp. PCC 6803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.22 STD DEV: 4.98
Synechocystis sp. PCC 6803, complete genome - 1..3573470
3172 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2726	 47.64	0	3042789..3043613	+	274	16331892	map	slr0786	-	methionine aminopeptidase
2727	 45.11	0	3043528..3043926	-	132	16331893	-	sll0800	-	hypothetical protein
2728	 48.73	0	3044833..3045852	+	339	16331894	-	slr0787	-	bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase
2729	 48.24	0	3045877..3047265	+	462	16331895	-	slr0788	-	putative nicotinate phosphoribosyltransferase
2730	 47.13	0	3047714..3048271	+	185	16331896	-	slr0789	-	hypothetical protein
2731	 43.87	0	3048285..3048635	+	116	16331897	umuC	slr0790	-	UmuC protein
2732	 49.01	0	3048902..3050266	-	454	16331898	-	sll0798	-	sensory transduction histidine kinase
2733	 45.96	0	3050263..3050967	-	234	16331899	-	sll0797	-	OmpR subfamily
2734	 51.70	0	3051086..3051733	+	215	16331900	-	slr0793	-	hypothetical protein
2735	 50.14	0	3051772..3054936	+	1054	16331901	-	slr0794	-	cation or drug efflux system protein
2736	 39.86	-1	3054872..3055699	+	275	16331902	-	slr0795	-	hypothetical protein
2737	 50.67	0	3055814..3057151	+	445	16331903	nreB	slr0796	-	nickel resistance
2738	 50.85	0	3057217..3058329	-	370	16331904	merR	sll0794	-	mercuric resistance operon regulatory protein; precorrin isomerase
2739	 51.43	0	3058411..3060339	+	642	16331905	-	slr0797	-	cation-transporting ATPase; E1-E2 ATPase
2740	 46.79	0	3060469..3060795	-	108	16331906	-	sll0793	-	hypothetical protein
2741	 48.37	0	3060807..3061205	-	132	16331907	smtB	sll0792	-	transcriptional repressor; SmtB
2742	 48.80	0	3061357..3063522	+	721	16331908	-	slr0798	-	hypothetical protein
2743	 46.84	0	3063549..3064925	-	458	16331909	-	sll0790	-	sensory transduction histidine kinase
2744	 48.64	0	3064912..3065610	-	232	16331910	-	sll0789	-	OmpR subfamily
2745	 46.02	0	3065617..3066207	-	196	16331911	-	sll0788	-	hypothetical protein
2746	 49.69	0	3066429..3066752	+	107	16331912	-	slr0799	-	transposase
2747	 44.29	0	3066749..3067177	+	142	16331913	-	slr0800	-	transposase
2748	 44.33	0	3067358..3067648	-	96	16331914	-	ssl1464	-	hypothetical protein
2749	 48.30	0	3067652..3068620	-	322	16331915	-	sll0787	-	hypothetical protein
2750	 44.91	0	3068630..3069208	-	192	16331916	-	sll0786	-	hypothetical protein
2751	 50.23	0	3069162..3070250	-	362	16331917	-	sll0785	-	hypothetical protein
2752	 48.61	0	3070281..3071321	-	346	16331918	merR	sll0784	-	nitrilase
2753	 43.69	0	3071459..3071941	-	160	16331919	-	sll0783	-	hypothetical protein
2754	 45.56	0	3072406..3073656	+	416	16331920	-	slr0801	-	hypothetical protein
2755	 44.86	0	3073629..3074738	-	369	16331921	-	sll0782	-	putative protein kinase
2756	 46.79	0	3075110..3075577	-	155	16331922	-	sll0781	-	hypothetical protein
2757	 40.26	-1	3075546..3075848	-	100	16331923	-	sll0780	-	hypothetical protein
2758	 49.53	0	3075896..3078550	-	884	16331924	-	sll0779	-	PleD-like protein
2759	 42.23	-1	3078838..3081210	-	790	16331925	-	sll0778	-	ABC transporter
2760	 38.24	-2	3081264..3082181	-	305	16331926	-	sll0777	-	hypothetical protein
2761	 39.59	-1	3082151..3083668	-	505	16331927	pknA	sll0776	-	protein kinase
2762	 46.30	0	3083746..3084123	-	125	16331928	-	sll0775	-	hypothetical protein
2763	 43.33	0	3084346..3084585	+	79	16331929	ESI3	ssr1169	-	salt-stress induced hydrophobic peptide
2764	 47.14	0	3084677..3088435	+	1252	16331930	-	slr0697	-	hypothetical protein
2765	 43.87	0	3088419..3088883	+	154	16331931	-	slr0698	-	hypothetical protein
2766	 35.70	-2	3089093..3089515	+	140	16331932	-	slr0699	-	hypothetical protein
2767	 44.00	0	3089656..3091014	+	452	16331933	-	slr0700	-	hypothetical protein
2768	 42.75	-1	3091244..3091657	+	137	16331934	merR	slr0701	-	mercuric resistance operon regulatory protein
2769	 48.17	0	3091764..3093017	+	417	16331935	-	slr0702	-	hypothetical protein
2770	 36.30	-2	3093408..3093845	-	145	16331936	-	sll0678	-	hypothetical protein
2771	 45.80	0	3093908..3094693	-	261	16331937	-	sll0677	-	transposase
2772	 36.36	-2	3094773..3094970	-	65	16331938	-	ssl1277	-	transposase
2773	 40.88	-1	3095044..3095586	-	180	16331939	-	sll0676	-	hypothetical protein
2774	 38.60	-1	3096048..3096332	+	94	16331940	-	ssr1175	-	transposase
2775	 45.67	0	3096388..3097173	+	261	16331941	-	slr0703	-	transposase
2776	 31.43	-2	3097275..3097379	+	34	16331942	-	smr0002	-	transposase
2777	 36.63	-2	3097436..3098284	+	282	16331943	-	slr0704	-	transposase
2778	 37.07	-2	3098425..3098718	+	97	16331944	-	ssr1176	-	transposase
2779	 47.32	0	3098729..3101566	-	945	16331945	-	sll0672	-	cation-transporting ATPase; E1-E2 ATPase
2780	 34.38	-2	3101820..3102962	-	380	16331946	-	sll0671	-	magnesium and cobalt transport protein
2781	 40.00	-1	3103070..3103579	-	169	16331947	-	sll0670	-	hypothetical protein
2782	 43.30	0	3103784..3104104	-	106	16331948	-	sll0669	-	hypothetical protein
2783	 44.31	0	3104142..3107102	+	986	16331949	polA	slr0707	-	DNA polymerase I
2784	 50.62	0	3107285..3108493	+	402	16331950	-	slr0708	-	hypothetical protein
2785	 34.38	-2	3108643..3109023	-	126	16331951	-	sll0668	-	transposase
2786	 35.00	-2	3109036..3109695	-	219	16331952	-	sll0667	-	transposase
2787	 45.00	0	3109733..3110152	-	139	16331953	-	sll0666	-	transposase
2788	 44.06	0	3110216..3110560	-	114	16331954	-	sll0665	-	transposase
2789	 32.03	-2	3110910..3111830	-	306	16331955	-	sll0664	-	hypothetical protein
2790	 50.13	0	3111996..3112388	+	130	16331956	-	slr0709	-	hypothetical protein
2791	 50.66	0	3112517..3113803	+	428	16331957	gdhA	slr0710	-	glutamate dehydrogenase (NADP+)
2792	 47.34	0	3113874..3114287	+	137	16331958	-	slr0711	-	hypothetical protein
2793	 48.61	0	3114479..3115447	+	322	16331959	-	slr0712	-	hypothetical protein
2794	 51.00	0	3115572..3115973	-	133	16331960	-	sll0662	-	ferredoxin
2795	 48.84	0	3115973..3116359	-	128	16331961	ycf35	sll0661	-	Ycf35
2796	 53.09	0	3116440..3116682	-	80	16331962	-	ssl1263	-	hypothetical protein
2797	 50.86	0	3117042..3118091	-	349	16331963	pdxA	sll0660	-	4-hydroxythreonine-4-phosphate dehydrogenase
2798	 45.05	0	3118192..3118302	+	36	16331964	petM	smr0003	-	cytochrome b6-f complex subunit; PetM
2799	 50.93	0	3118391..3119515	+	374	16331965	tgt	slr0713	-	queuine tRNA-ribosyltransferase
2800	 42.57	-1	3119608..3121176	-	522	16331966	-	sll0659	-	hypothetical protein
2801	 39.80	-1	3121193..3121687	-	164	16331967	-	sll0658	-	hypothetical protein
2802	 40.00	-1	3121684..3121953	-	89	16331968	-	ssl1255	-	hypothetical protein
2803	 49.91	0	3121972..3123069	-	365	16331969	mraY	sll0657	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
2804	 48.38	0	3123182..3125035	+	617	16331970	-	slr0765	-	hypothetical protein
2805	 45.80	0	3125045..3126199	-	384	16331971	pfkA	sll0745	-	phosphofructokinase
2806	 45.35	0	3126311..3127342	-	343	16331972	-	sll0744	-	dihydroorotate dehydrogenase 2
2807	 32.71	-2	3127364..3127846	-	160	16331973	-	sll0743	-	hypothetical protein
2808	 39.56	-1	3127864..3128313	-	149	16331974	-	sll0742	-	hypothetical protein
2809	 51.25	0	3128387..3131986	-	1199	16331975	nifJ	sll0741	-	pyruvate oxidoreductase
2810	 39.97	-1	3132577..3133284	-	235	16331976	-	sll0740	-	hypothetical protein
2811	 49.40	0	3133291..3135138	-	615	16331977	-	sll0739	-	ABC transporter
2812	 47.36	0	3135185..3135997	-	270	16331978	modA	sll0738	-	molybdate-binding periplasmic protein
2813	 47.02	0	3136019..3138604	-	861	16331979	-	sll0737	-	hypothetical protein
2814	 49.84	0	3138917..3139855	-	312	16331980	-	sll0048	-	hypothetical protein
2815	 44.55	0	3140045..3140356	-	103	16331981	-	sll0047	-	hypothetical protein
2816	 51.88	0	3140307..3140678	+	123	16331982	-	slr0022	-	hypothetical protein
2817	 49.01	0	3140713..3142875	-	720	16331983	sps	sll0045	-	sucrose phosphate synthase
2818	 45.85	0	3142957..3143571	+	204	16331984	-	slr0023	-	hypothetical protein
2819	 49.79	0	3143696..3144181	-	161	16331985	-	sll0044	-	hypothetical protein
2820	 55.29	+1	3144213..3148421	-	1402	16331986	-	sll0043	-	CheA like protein
2821	 54.07	+1	3148438..3148929	-	163	16331987	tar	sll0042	-	methyl-accepting chemotaxis protein II
2822	 53.81	+1	3148975..3151977	-	1000	16331988	-	sll0041	-	tsr or; CheD
2823	 53.01	0	3152239..3152787	-	182	16331989	-	sll0040	-	hypothetical protein
2824	 44.44	0	3152955..3153314	-	119	16331990	-	sll0039	-	CheY family protein
2825	 52.44	0	3153452..3154660	-	402	16331991	-	sll0038	-	PatA subfamily protein
48.22	MEAN

4.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.