IslandPathversion 1.0

IslandPath Analysis: Synechocystis sp. PCC 6803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.22 STD DEV: 4.98
Synechocystis sp. PCC 6803, complete genome - 1..3573470
3172 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2684	 53.14	0	2992055..2992690	+	211	16331850	-	slr0110	-	hypothetical protein
2685	 46.55	0	2992802..2993323	+	173	16331851	-	slr0111	-	hypothetical protein
2686	 52.33	0	2993505..2994062	+	185	16331852	-	slr0112	-	hypothetical protein
2687	 43.90	0	2994185..2995717	+	510	16331853	-	slr0114	-	hypothetical protein
2688	 50.55	0	2995908..2996633	+	241	16331854	-	slr0115	-	OmpR subfamily
2689	 47.79	0	2996695..2997441	+	248	16331855	-	slr0116	-	phycocyanobilin:ferredoxin oxidoreductase
2690	 32.59	-2	2997811..2998080	-	89	16331856	-	ssl0172	-	transposase
2691	 32.02	-2	2998239..2998925	-	228	16331857	-	sll0092	-	transposase
2692	 50.51	0	2999181..3000560	+	459	16331858	thiC	slr0118	-	thiamine biosynthesis protein ThiC
2693	 39.18	-1	3000786..3001742	+	318	16331859	brkB	slr0119	-	serum resistance locus; BrkB
2694	 50.76	0	3002075..3002797	+	240	16331860	-	slr0120	-	hypothetical protein
2695	 53.70	+1	3002966..3004453	+	495	16331861	-	slr0121	-	hypothetical protein
2696	 49.98	0	3004454..3006640	-	728	16331862	ppk	sll0290	-	polyphosphate kinase
2697	 48.98	0	3007280..3007573	-	97	16331863	minE	ssl0546	-	septum site-determining protein; MinE
2698	 47.69	0	3007631..3008431	-	266	16331864	minD	sll0289	-	septum site-determining protein; MinD
2699	 55.78	+1	3008508..3009251	-	247	16331865	minC	sll0288	-	septum formation inhibitor
2700	 54.03	+1	3009463..3010095	+	210	16331866	fraH	slr0298	-	heterocyst to vegetative cell connection protein
2701	 42.66	-1	3010157..3010864	+	235	16331867	-	slr0299	-	hypothetical protein
2702	 45.30	0	3010840..3011424	+	194	16331868	-	slr0300	-	hypothetical protein
2703	 49.00	0	3011672..3014128	+	818	16331869	ppsA	slr0301	-	phosphoenolpyruvate synthase
2704	 46.90	0	3014390..3016696	+	768	16331870	-	slr0302	-	PleD-like protein
2705	 47.27	0	3017183..3018151	+	322	16331871	-	slr0303	-	hypothetical protein
2706	 39.27	-1	3018204..3019214	+	336	16331872	-	slr0304	-	hypothetical protein
2707	 44.29	0	3019261..3019890	+	209	16331873	-	slr0305	-	hypothetical protein
2708	 50.82	0	3020301..3021821	+	506	16331874	-	slr0306	-	hypothetical protein
2709	 51.36	0	3021893..3022408	-	171	16331875	-	sll0286	-	hypothetical protein
2710	 45.69	0	3022532..3024271	-	579	16331876	-	sll0284	-	hypothetical protein
2711	 34.14	-2	3024508..3025746	-	412	16331877	-	sll0283	-	hypothetical protein
2712	 45.92	0	3026236..3027657	+	473	16331878	-	slr0309	-	P-methylase
2713	 49.95	0	3028501..3029481	-	326	16331879	-	sll0282	-	hypothetical protein
2714	 47.23	0	3029483..3030655	-	390	16331880	-	sll0281	-	hypothetical protein
2715	 47.28	0	3030725..3031828	-	367	16331881	-	sll0280	-	hypothetical protein
2716	 47.41	0	3032496..3034775	+	759	16331882	-	slr0311	-	sensory transduction histidine kinase
2717	 46.67	0	3034783..3035412	+	209	16331883	-	slr0312	-	NarL subfamily protein
2718	 43.19	-1	3035634..3036191	+	185	16331884	-	slr0313	-	hypothetical protein
2719	 48.38	0	3036234..3037064	+	276	16331885	-	slr0314	-	bromoperoxidase
2720	 48.98	0	3037310..3038044	+	244	16331886	-	slr0315	-	hypothetical protein
2721	 45.45	0	3038375..3039166	+	263	16331887	-	slr0316	-	hypothetical protein
2722	 50.23	0	3039858..3040721	+	287	16331888	-	slr0317	-	hypothetical protein
2723	 50.16	0	3040804..3041415	+	203	16331889	-	slr0318	-	hypothetical protein
2724	 46.12	0	3041494..3042408	+	304	16331890	blaOXA-3	slr0319	-	beta-lactamase
2725	 47.98	0	3042487..3042684	-	65	16331891	-	ssl0511	-	hypothetical protein
2726	 47.64	0	3042789..3043613	+	274	16331892	map	slr0786	-	methionine aminopeptidase
2727	 45.11	0	3043528..3043926	-	132	16331893	-	sll0800	-	hypothetical protein
2728	 48.73	0	3044833..3045852	+	339	16331894	-	slr0787	-	bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase
2729	 48.24	0	3045877..3047265	+	462	16331895	-	slr0788	-	putative nicotinate phosphoribosyltransferase
2730	 47.13	0	3047714..3048271	+	185	16331896	-	slr0789	-	hypothetical protein
2731	 43.87	0	3048285..3048635	+	116	16331897	umuC	slr0790	-	UmuC protein
2732	 49.01	0	3048902..3050266	-	454	16331898	-	sll0798	-	sensory transduction histidine kinase
2733	 45.96	0	3050263..3050967	-	234	16331899	-	sll0797	-	OmpR subfamily
2734	 51.70	0	3051086..3051733	+	215	16331900	-	slr0793	-	hypothetical protein
2735	 50.14	0	3051772..3054936	+	1054	16331901	-	slr0794	-	cation or drug efflux system protein
2736	 39.86	-1	3054872..3055699	+	275	16331902	-	slr0795	-	hypothetical protein
2737	 50.67	0	3055814..3057151	+	445	16331903	nreB	slr0796	-	nickel resistance
2738	 50.85	0	3057217..3058329	-	370	16331904	merR	sll0794	-	mercuric resistance operon regulatory protein; precorrin isomerase
2739	 51.43	0	3058411..3060339	+	642	16331905	-	slr0797	-	cation-transporting ATPase; E1-E2 ATPase
2740	 46.79	0	3060469..3060795	-	108	16331906	-	sll0793	-	hypothetical protein
2741	 48.37	0	3060807..3061205	-	132	16331907	smtB	sll0792	-	transcriptional repressor; SmtB
2742	 48.80	0	3061357..3063522	+	721	16331908	-	slr0798	-	hypothetical protein
2743	 46.84	0	3063549..3064925	-	458	16331909	-	sll0790	-	sensory transduction histidine kinase
2744	 48.64	0	3064912..3065610	-	232	16331910	-	sll0789	-	OmpR subfamily
2745	 46.02	0	3065617..3066207	-	196	16331911	-	sll0788	-	hypothetical protein
2746	 49.69	0	3066429..3066752	+	107	16331912	-	slr0799	-	transposase
2747	 44.29	0	3066749..3067177	+	142	16331913	-	slr0800	-	transposase
2748	 44.33	0	3067358..3067648	-	96	16331914	-	ssl1464	-	hypothetical protein
2749	 48.30	0	3067652..3068620	-	322	16331915	-	sll0787	-	hypothetical protein
2750	 44.91	0	3068630..3069208	-	192	16331916	-	sll0786	-	hypothetical protein
2751	 50.23	0	3069162..3070250	-	362	16331917	-	sll0785	-	hypothetical protein
2752	 48.61	0	3070281..3071321	-	346	16331918	merR	sll0784	-	nitrilase
2753	 43.69	0	3071459..3071941	-	160	16331919	-	sll0783	-	hypothetical protein
2754	 45.56	0	3072406..3073656	+	416	16331920	-	slr0801	-	hypothetical protein
2755	 44.86	0	3073629..3074738	-	369	16331921	-	sll0782	-	putative protein kinase
2756	 46.79	0	3075110..3075577	-	155	16331922	-	sll0781	-	hypothetical protein
2757	 40.26	-1	3075546..3075848	-	100	16331923	-	sll0780	-	hypothetical protein
2758	 49.53	0	3075896..3078550	-	884	16331924	-	sll0779	-	PleD-like protein
2759	 42.23	-1	3078838..3081210	-	790	16331925	-	sll0778	-	ABC transporter
2760	 38.24	-2	3081264..3082181	-	305	16331926	-	sll0777	-	hypothetical protein
2761	 39.59	-1	3082151..3083668	-	505	16331927	pknA	sll0776	-	protein kinase
2762	 46.30	0	3083746..3084123	-	125	16331928	-	sll0775	-	hypothetical protein
2763	 43.33	0	3084346..3084585	+	79	16331929	ESI3	ssr1169	-	salt-stress induced hydrophobic peptide
2764	 47.14	0	3084677..3088435	+	1252	16331930	-	slr0697	-	hypothetical protein
2765	 43.87	0	3088419..3088883	+	154	16331931	-	slr0698	-	hypothetical protein
2766	 35.70	-2	3089093..3089515	+	140	16331932	-	slr0699	-	hypothetical protein
2767	 44.00	0	3089656..3091014	+	452	16331933	-	slr0700	-	hypothetical protein
2768	 42.75	-1	3091244..3091657	+	137	16331934	merR	slr0701	-	mercuric resistance operon regulatory protein
2769	 48.17	0	3091764..3093017	+	417	16331935	-	slr0702	-	hypothetical protein
2770	 36.30	-2	3093408..3093845	-	145	16331936	-	sll0678	-	hypothetical protein
2771	 45.80	0	3093908..3094693	-	261	16331937	-	sll0677	-	transposase
2772	 36.36	-2	3094773..3094970	-	65	16331938	-	ssl1277	-	transposase
2773	 40.88	-1	3095044..3095586	-	180	16331939	-	sll0676	-	hypothetical protein
2774	 38.60	-1	3096048..3096332	+	94	16331940	-	ssr1175	-	transposase
2775	 45.67	0	3096388..3097173	+	261	16331941	-	slr0703	-	transposase
2776	 31.43	-2	3097275..3097379	+	34	16331942	-	smr0002	-	transposase
2777	 36.63	-2	3097436..3098284	+	282	16331943	-	slr0704	-	transposase
2778	 37.07	-2	3098425..3098718	+	97	16331944	-	ssr1176	-	transposase
2779	 47.32	0	3098729..3101566	-	945	16331945	-	sll0672	-	cation-transporting ATPase; E1-E2 ATPase
2780	 34.38	-2	3101820..3102962	-	380	16331946	-	sll0671	-	magnesium and cobalt transport protein
2781	 40.00	-1	3103070..3103579	-	169	16331947	-	sll0670	-	hypothetical protein
2782	 43.30	0	3103784..3104104	-	106	16331948	-	sll0669	-	hypothetical protein
2783	 44.31	0	3104142..3107102	+	986	16331949	polA	slr0707	-	DNA polymerase I
48.22	MEAN

4.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.