IslandPathversion 1.0

IslandPath Analysis: Synechocystis sp. PCC 6803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.22 STD DEV: 4.98
Synechocystis sp. PCC 6803, complete genome - 1..3573470
3172 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
221	 46.79	0	244783..245436	-	217	16329391	-	sll1677	-	spore maturation protein B
222	 51.52	0	245502..247019	-	505	16329392	malQ	sll1676	-	4-alpha-glucanotransferase
223	 50.55	0	247117..247569	-	150	16329393	-	sll1675	-	hypothetical protein
224	 50.96	0	247619..248713	+	364	16329394	-	slr1787	-	thiamine monophosphate kinase
225	 41.76	-1	249062..250117	+	351	16329395	-	slr1788	-	hypothetical protein
226	 41.23	-1	250160..251641	+	493	16329396	-	slr1789	-	hypothetical protein
227	 40.54	-1	251758..253116	-	452	16329397	-	sll1673	-	regulatory components of sensory transduction system
228	 38.56	-1	253125..255629	-	834	16329398	-	sll1672	-	hybrid sensory kinase
229	 49.07	0	255823..256305	-	160	16329399	-	sll1671	-	hypothetical protein
230	 47.08	0	256647..257279	+	210	16329400	-	slr1790	-	hypothetical protein
231	 49.87	0	257426..258175	+	249	16329401	cysH	slr1791	-	phosphoadenosine phosphosulfate reductase
232	 48.37	0	258227..259363	-	378	16329402	hrcA	sll1670	-	heat-inducible transcription repressor
233	 53.33	+1	259702..260271	-	189	16329403	aroK	sll1669	-	shikimate kinase
234	 50.00	0	260463..261638	+	391	16329404	talB	slr1793	-	transaldolase/EF-hand domain-containing protein
235	 46.97	0	261863..262060	+	65	16329405	-	ssr2998	-	hypothetical protein
236	 53.54	+1	262177..263265	+	362	16329406	-	slr1794	-	hypothetical protein
237	 52.87	0	263321..263965	+	214	16329407	msrA	slr1795	-	methionine sulfoxide reductase A
238	 46.18	0	264190..264477	+	95	16329408	-	ssr3000	-	hypothetical protein
239	 48.69	0	264516..265316	-	266	16329409	mom72	sll1667	-	mitochondrial outer membrane 72K protein
240	 53.14	0	265414..265938	-	174	16329410	dnaJ	sll1666	-	DnaJ protein
241	 47.03	0	265995..266600	+	201	16329411	-	slr1796	-	hypothetical protein
242	 51.86	0	266702..268471	-	589	16329412	-	sll1665	-	hypothetical protein
243	 49.09	0	268789..269727	-	312	16329413	-	sll1664	-	hypothetical protein
244	 53.54	+1	269773..270435	-	220	16329414	-	sll1663	-	hypothetical protein
245	 53.02	0	270476..271369	-	297	16329415	pheA	sll1662	-	prephenate dehydratase
246	 43.57	0	271600..273357	+	585	16329416	pleD	slr1798	-	PleD gene product
247	 50.26	0	273802..274386	-	194	16329417	-	sll1660	-	hypothetical protein
248	 50.64	0	274502..275680	-	392	16329418	-	sll1659	-	FO synthase subunit 2
249	 48.43	0	275807..276283	-	158	16329419	-	sll1658	-	hypothetical protein
250	 52.51	0	276429..278342	+	637	16329420	-	slr1799	-	hypothetical protein
251	 52.43	0	278494..279561	+	355	16329421	-	slr1800	-	hypothetical protein
252	 53.12	0	279512..280087	-	191	16329422	-	sll1656	-	hypothetical protein
253	 52.85	0	280127..280951	-	274	16329423	birA	sll1655	-	biotin [acetyl-CoA-carboxylase] ligase
254	 53.38	+1	280970..281443	-	157	16329424	-	sll1654	-	hypothetical protein
255	 51.19	0	281507..282223	-	238	16329425	ubiE	sll1653	-	ubiquinone/menaquinone biosynthesis methyltransferase
256	 41.61	-1	282290..282700	-	136	16329426	-	sll1652	-	hypothetical protein
257	 50.21	0	283060..284487	+	475	16329427	icd	slr1289	-	isocitrate dehydrogenase
258	 45.55	0	284508..285080	+	190	16329428	-	slr1290	-	hypothetical protein
259	 45.79	0	285144..285938	-	264	16329429	-	sll1201	-	hypothetical protein
260	 51.61	0	286164..287843	+	559	16329430	ndhD2	slr1291	-	NAD(P)H-quinone oxidoreductase subunit 4
261	 48.13	0	287929..289104	-	391	16329431	-	sll1200	-	hypothetical protein
262	 53.15	0	289322..290845	+	507	16329432	-	slr1293	-	hypothetical protein
263	 50.55	0	290902..291174	+	90	16329433	ycf19	ssr2142	-	hypothetical protein
264	 51.99	0	291626..292708	+	360	16329434	sufA	slr1295	-	iron transport protein
265	 52.30	0	292790..293485	-	231	16329435	trmD	sll1198	-	tRNA (guanine-N(1)-)-methyltransferase
266	 47.70	0	293496..293669	-	57	16329436	-	ssl2384	-	hypothetical protein
267	 53.22	+1	293878..294963	-	361	16329437	pfkA	sll1196	-	phosphofructokinase
268	 45.94	0	295076..297343	+	755	16329438	-	slr1298	-	hypothetical protein
269	 44.19	0	297493..297888	-	131	16329439	psbU	sll1194	-	photosystem II complex extrinsic protein precursor U
270	 47.99	0	298083..298580	-	165	16329440	-	sll1193	-	hypothetical protein
271	 49.49	0	299522..300883	+	453	16329441	-	slr1299	-	UDP-glucose dehydrogenase
272	 53.65	+1	301110..302354	+	414	16329442	ubiH	slr1300	-	2-octaprenyl-6-methoxyphenyl hydroxylase
273	 50.12	0	302367..302789	-	140	16329443	-	sll1192	-	hypothetical protein
274	 51.60	0	302786..303190	-	134	16329444	-	sll1191	-	hypothetical protein
275	 55.56	+1	303424..303621	+	65	16329445	-	ssr2153	-	hypothetical protein
276	 48.57	0	303939..305546	+	535	16329446	-	slr1301	-	hypothetical protein
277	 48.70	0	305595..306824	+	409	16329447	-	slr1302	-	hypothetical protein
278	 50.45	0	306844..308076	+	410	16329448	-	slr1303	-	hypothetical protein
279	 51.19	0	308114..309418	-	434	16329449	glcE	sll1189	-	glycolate oxidase subunit; GlcE
280	 44.31	0	309649..312171	+	840	16329450	-	slr1305	-	regulatory components of sensory transduction system
281	 52.54	0	312258..313715	+	485	16329451	-	slr1306	-	hypothetical protein
282	 45.45	0	313705..314199	-	164	16329452	-	sll1188	-	hypothetical protein
283	 44.37	0	314255..315106	-	283	16329453	lgt	sll1187	-	prolipoprotein diacylglyceryl transferase
284	 44.55	0	315134..315784	-	216	16329454	-	sll1186	-	hypothetical protein
285	 51.12	0	315882..316904	-	340	16329455	hemF	sll1185	-	coproporphyrinogen III oxidase
286	 50.48	0	317127..317849	-	240	16329456	ho1	sll1184	-	heme oxygenase
287	 49.49	0	317984..318571	+	195	16329457	-	slr1307	-	hypothetical protein
288	 48.95	0	318661..318897	+	78	16329458	rpmB	ssr1604	-	50S ribosomal protein L28
289	 48.68	0	319096..320529	+	477	16329459	-	slr0962	-	hypothetical protein
290	 44.34	0	320785..321447	-	220	16329460	-	sll0943	-	hypothetical protein
291	 52.57	0	321699..323606	+	635	16329461	sir	slr0963	-	sulfite reductase subunit beta
292	 53.51	+1	323805..324731	+	308	16329462	-	slr0964	-	hypothetical protein
293	 51.62	0	324831..326006	+	391	16329463	dnaN	slr0965	-	DNA polymerase III subunit beta
294	 52.33	0	326150..326944	+	264	16329464	trpA	slr0966	-	tryptophan synthase subunit alpha
295	 49.67	0	327100..327552	+	150	16329465	-	slr0967	-	hypothetical protein
296	 43.39	0	327604..327981	-	125	16329466	-	sll0939	-	hypothetical protein
297	 49.40	0	328006..329181	-	391	16329467	-	sll0938	-	succinyldiaminopimelate transaminase
298	 38.33	-1	329222..329521	-	99	16329468	-	ssl1792	-	hypothetical protein
299	 52.12	0	329555..331060	-	501	16329469	-	sll0936	-	hypothetical protein
300	 50.64	0	331144..333027	+	627	16329470	cbiH	slr0969	-	precorrin methylase
301	 55.31	+1	333130..334485	+	451	16329471	-	slr0971	-	hypothetical protein
302	 54.45	+1	334568..335623	-	351	16329472	ccmA	sll0934	-	3-deoxy-7-phosphoheptulonate synthase
303	 53.25	+1	335819..336295	-	158	16329473	-	sll0933	-	hypothetical protein
304	 50.37	0	336313..336582	-	89	16329474	rps15	ssl1784	-	30S ribosomal protein S15
305	 50.30	0	336747..337760	-	337	16329475	-	sll0932	-	hypothetical protein
306	 54.14	+1	337861..338331	-	156	16329476	-	sll0931	-	hypothetical protein
307	 47.47	0	338503..339096	-	197	16329477	-	sll0930	-	hypothetical protein
308	 47.74	0	339140..339625	-	161	16329478	apcD	sll0928	-	allophycocyanin-B
309	 52.18	0	339737..340999	-	420	161344769	metX	sll0927	-	S-adenosylmethionine synthetase
310	 48.36	0	341135..342139	-	334	16329480	-	sll0926	-	tRNA-dihydrouridine synthase A
311	 47.62	0	342151..342759	-	202	16329481	-	sll0925	-	hypothetical protein
312	 51.12	0	343026..343559	+	177	16329482	infC	slr0974	-	translation initiation factor IF-3
313	 51.28	0	343863..344720	+	285	16329483	-	slr0975	-	hypothetical protein
314	 50.45	0	344744..345298	-	184	16329484	-	sll0924	-	hypothetical protein
315	 49.80	0	345536..347806	-	756	16329485	epsB	sll0923	-	exopolysaccharide export protein
316	 47.86	0	348384..348734	-	116	16329486	-	sll0922	-	hypothetical protein
317	 49.66	0	348701..349429	+	242	16329487	-	slr0976	-	hypothetical protein
318	 44.52	0	349468..350298	+	276	16329488	-	slr0977	-	ABC transporter
319	 49.51	0	350509..350916	+	135	16329489	-	slr0978	-	hypothetical protein
320	 45.83	0	351036..351467	+	143	16329490	-	slr0980	-	hypothetical protein
48.22	MEAN

4.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.