IslandPathversion 1.0

IslandPath Analysis: Synechocystis sp. PCC 6803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.22 STD DEV: 4.98
Synechocystis sp. PCC 6803, complete genome - 1..3573470
3172 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2377	 50.95	0	2640662..2641813	-	383	16331543	pstS	sll0680	-	phosphate-binding periplasmic protein precursor
2378	 48.17	0	2642135..2643145	-	336	16331544	sphX	sll0679	-	SphX protein precursor
2379	 50.30	0	2643403..2644569	+	388	16331545	-	slr0719	-	hypothetical protein
2380	 51.16	0	2644795..2645097	+	100	16331546	rpsN	slr0628	-	30S ribosomal protein S14
2381	 53.36	+1	2645271..2646074	-	267	16331547	im30	sll0617	-	chloroplast membrane-associated 30 kD protein
2382	 51.36	0	2646623..2647282	+	219	16331548	-	slr0630	-	hypothetical protein
2383	 49.12	0	2647386..2650184	-	932	16331549	secA	sll0616	-	preprotein translocase subunit SecA
2384	 47.02	0	2650377..2650997	-	206	16331550	-	sll0615	-	transmembrane protein FT27
2385	 48.37	0	2651440..2651838	-	132	16331551	-	sll0614	-	hypothetical protein
2386	 51.84	0	2651866..2652951	-	361	16331552	ruvB	sll0613	-	Holliday junction DNA helicase B
2387	 55.25	+1	2653153..2655123	+	656	16331553	thiG	slr0633	-	ThiG protein
2388	 47.50	0	2655459..2656037	+	192	16331554	-	slr0634	-	hypothetical protein
2389	 49.84	0	2656139..2657077	+	312	16331555	-	slr0635	-	hypothetical protein
2390	 46.53	0	2657148..2657594	-	148	16331556	-	sll0611	-	hypothetical protein
2391	 51.98	0	2657850..2658632	+	260	16331557	cobS	slr0636	-	cobalamin synthase
2392	 52.80	0	2659080..2659865	+	261	16331558	-	slr0637	-	hypothetical protein
2393	 49.67	0	2659905..2660804	+	299	16331559	glyQ	slr0638	-	glycyl-tRNA synthetase subunit alpha
2394	 40.85	-1	2660854..2661744	+	296	16331560	-	slr0639	-	hypothetical protein
2395	 51.96	0	2661959..2663284	+	441	16331561	-	slr0640	-	sensory transduction histidine kinase
2396	 47.81	0	2663366..2663731	-	121	16331562	-	sll0609	-	hypothetical protein
2397	 54.60	+1	2663686..2664000	-	104	16331563	-	sll0608	-	hypothetical protein
2398	 51.99	0	2664403..2665887	+	494	16331564	-	slr0642	-	integral membrane protein
2399	 51.42	0	2666040..2667521	+	493	16331565	-	slr0643	-	hypothetical protein
2400	 52.41	0	2667542..2668972	-	476	16331566	-	sll0606	-	hypothetical protein
2401	 51.40	0	2669089..2670156	+	355	16331567	-	slr0644	-	hypothetical protein
2402	 47.76	0	2670115..2671902	-	595	16331568	menD	sll0603	-	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase
2403	 52.36	0	2671895..2673970	-	691	16331569	-	sll0602	-	hypothetical protein
2404	 48.95	0	2674101..2674721	+	206	16331570	-	slr0645	-	hypothetical protein
2405	 52.36	0	2674736..2676196	+	486	16331571	dacB	slr0646	-	penicillin-binding protein 4
2406	 53.72	+1	2676937..2677755	-	272	16331572	-	sll0601	-	hypothetical protein
2407	 48.34	0	2678140..2679738	+	532	16331573	metG	slr0649	-	methionyl-tRNA synthetase
2408	 47.52	0	2679884..2680489	+	201	16331574	-	slr0650	-	hypothetical protein
2409	 49.06	0	2680550..2681872	-	440	16331575	dgt	sll0398	-	dGTP triphosphohydrolase
2410	 48.32	0	2681894..2682547	-	217	16331576	-	sll0397	-	hypothetical protein
2411	 51.56	0	2682552..2683226	-	224	16331577	-	sll0396	-	OmpR subfamily
2412	 52.43	0	2683443..2684081	-	212	16331578	-	sll0395	-	hypothetical protein
2413	 49.60	0	2684198..2684824	-	208	16331579	-	sll0394	-	hypothetical protein
2414	 51.36	0	2684959..2687055	+	698	16331580	napA	slr0415	-	Na(+)/H(+) antiporter
2415	 43.08	-1	2687109..2687549	+	146	16331581	-	slr0416	-	hypothetical protein
2416	 53.31	+1	2687952..2690534	+	860	16331582	gyrA	slr0417	-	DNA gyrase subunit A
2417	 53.73	+1	2690534..2691445	+	303	16331583	-	slr0418	-	hypothetical protein
2418	 49.82	0	2691528..2692382	-	284	16331584	-	sll0385	-	ABC transporter
2419	 49.74	0	2692304..2693077	-	257	16331585	-	sll0384	-	hypothetical protein
2420	 51.47	0	2693080..2693724	-	214	16331586	cbiM	sll0383	-	cobalt transport protein CbiM
2421	 51.60	0	2693725..2694255	-	176	16331587	-	sll0382	-	hypothetical protein
2422	 50.51	0	2694261..2695145	-	294	16331588	-	sll0381	-	hypothetical protein
2423	 50.00	0	2695620..2695775	+	51	16331589	-	ssr0692	-	hypothetical protein
2424	 48.23	0	2696125..2696406	-	93	16331590	-	ssl0750	-	hypothetical protein
2425	 41.67	-1	2696549..2696836	+	95	16331591	-	ssr0693	-	hypothetical protein
2426	 48.36	0	2697151..2698248	-	365	16331592	rfbW	sll0380	-	mannosyl transferase
2427	 50.45	0	2698258..2699145	-	295	16331593	lpxA	sll0379	-	UDP-N-acetylglucosamine acyltransferase
2428	 51.75	0	2699172..2699855	+	227	16331594	-	slr0420	-	hypothetical protein
2429	 40.00	-1	2700069..2700818	+	249	16331595	-	slr0421	-	hypothetical protein
2430	 50.38	0	2700944..2701735	-	263	16331596	cysG	sll0378	-	uroporphyrin-III C-methyltransferase
2431	 47.19	0	2701931..2705530	-	1199	16331597	mfd	sll0377	-	transcription-repair coupling factor
2432	 49.35	0	2705678..2705983	-	101	16331598	-	sll0376	-	hypothetical protein
2433	 53.52	+1	2706733..2707698	+	321	16331599	rlpA	slr0423	-	rare lipoprotein A
2434	 48.67	0	2708257..2709006	-	249	16331600	braG	sll0374	-	high-affinity branched-chain amino acid transport ATP-binding protein
2435	 51.15	0	2709084..2710385	-	433	16331601	proA	sll0373	-	gamma-glutamyl phosphate reductase
2436	 48.07	0	2710511..2711107	-	198	16331602	-	sll0372	-	hypothetical protein
2437	 42.01	-1	2711419..2711637	-	72	16331603	-	ssl0738	-	hypothetical protein
2438	 31.42	-2	2711740..2713305	-	521	16331604	-	sll0371	-	hypothetical protein
2439	 51.39	0	2713371..2716616	-	1081	161344753	carB	sll0370	-	carbamoyl phosphate synthase large subunit
2440	 46.62	0	2716735..2717163	-	142	16331606	-	sll0369	-	hypothetical protein
2441	 49.35	0	2717177..2717713	-	178	16331607	pyrR	sll0368	-	pyrimidine regulatory protein PyrR
2442	 46.10	0	2718050..2718754	+	234	16331608	folE	slr0426	-	GTP cyclohydrolase I
2443	 52.84	0	2718963..2720213	+	416	16331609	-	slr0427	-	competence damage-inducible protein A
2444	 51.66	0	2720250..2720702	-	150	16331610	-	sll0189	-	hypothetical protein
2445	 56.18	+1	2720729..2722234	-	501	16331611	-	sll0188	-	hypothetical protein
2446	 53.67	+1	2722431..2724038	+	535	16331612	lytB	slr0191	-	amidase enhancer
2447	 50.72	0	2724075..2724419	+	114	16331613	-	slr0192	-	hypothetical protein
2448	 49.34	0	2724648..2725103	+	151	16331614	-	slr0193	-	RNA-binding protein
2449	 49.72	0	2725326..2726033	+	235	16331615	rpiA	slr0194	-	ribose-5-phosphate isomerase A
2450	 50.54	0	2726089..2726640	+	183	16331616	-	slr0195	-	hypothetical protein
2451	 47.92	0	2726676..2727059	+	127	16331617	-	slr0196	-	hypothetical protein
2452	 48.01	0	2727047..2728708	+	553	16331618	-	slr0197	-	ComE ORF1
2453	 52.62	0	2728812..2730071	-	419	16331619	-	sll0185	-	hypothetical protein
2454	 47.65	0	2730649..2731563	+	304	16331620	-	slr0199	-	hypothetical protein
2455	 51.19	0	2731560..2732774	-	404	16331621	rpoD	sll0184	-	RNA polymerase sigma factor SigC
2456	 50.00	0	2733081..2733986	+	301	16331622	hdrB	slr0201	-	heterodisulfide reductase subunit B
2457	 50.68	0	2734030..2734323	-	97	16331623	-	ssl0353	-	hypothetical protein
2458	 51.79	0	2734522..2735301	-	259	16331624	-	sll0183	-	hypothetical protein
2459	 45.76	0	2735422..2735598	-	58	16331625	-	ssl0352	-	hypothetical protein
2460	 48.49	0	2735806..2737791	-	661	16331626	-	sll0182	-	ABC transporter
2461	 32.85	-2	2737929..2738552	-	207	16331627	-	sll0181	-	hypothetical protein
2462	 36.27	-2	2738712..2738915	-	67	16331628	-	ssl0350	-	hypothetical protein
2463	 53.45	+1	2739149..2740654	-	501	16331629	-	sll0180	-	hypothetical protein
2464	 50.36	0	2740911..2741327	+	138	16331630	-	slr0204	-	hypothetical protein
2465	 51.86	0	2741674..2743125	-	483	16331631	gltX	sll0179	-	glutamyl-tRNA synthetase
2466	 41.84	-1	2743295..2744917	+	540	16331632	-	slr0207	-	hypothetical protein
2467	 48.21	0	2744987..2745766	+	259	16331633	-	slr0208	-	hypothetical protein
2468	 48.25	0	2745934..2746161	+	75	16331634	ftrV	ssr0330	-	ferredoxin-thioredoxin reductase, variable chain
2469	 39.54	-1	2746288..2747334	+	348	16331635	-	slr0209	-	hypothetical protein
2470	 43.46	0	2747604..2748857	+	417	16331636	-	slr0210	-	sensory transduction histidine kinase
2471	 49.30	0	2748946..2749158	+	70	16331637	-	ssr0332	-	hypothetical protein
2472	 50.00	0	2749230..2750441	+	403	16331638	-	slr0211	-	hypothetical protein
2473	 46.25	0	2750577..2750816	-	79	16331639	-	ssl0331	-	hypothetical protein
2474	 46.96	0	2751026..2754613	+	1195	16331640	metH	slr0212	-	5-methyltetrahydrofolate--homocysteine methyltransferase
2475	 36.71	-2	2754850..2755086	+	78	16331641	-	ssr0336	-	hypothetical protein
2476	 37.15	-2	2755703..2759662	-	1319	16331642	-	sll0178	-	hypothetical protein
48.22	MEAN

4.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.