IslandPathversion 1.0

IslandPath Analysis: Synechocystis sp. PCC 6803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.22 STD DEV: 4.98
Synechocystis sp. PCC 6803, complete genome - 1..3573470
3172 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2346	 55.96	+1	2612907..2613317	+	136	16331512	-	slr0476	-	hypothetical protein
2347	 49.17	0	2613481..2613600	-	39	16331513	psbX	sml0002	-	photosystem II PsbX protein
2348	 52.29	0	2613717..2614370	+	217	16331514	purN	slr0477	-	phosphoribosylglycinamide formyltransferase
2349	 50.90	0	2614367..2615089	+	240	16331515	-	slr0479	-	hypothetical protein
2350	 51.13	0	2615100..2616599	+	499	16331516	ycf46	slr0480	-	hypothetical protein
2351	 49.67	0	2616624..2617382	+	252	16331517	-	slr0482	-	hypothetical protein
2352	 46.89	0	2617440..2617889	+	149	16331518	-	slr0483	-	hypothetical protein
2353	 51.92	0	2618067..2620094	+	675	16331519	-	slr0484	-	sensory transduction histidine kinase
2354	 50.81	0	2620171..2620662	+	163	16331520	-	slr0487	-	hypothetical protein
2355	 51.25	0	2620798..2622399	+	533	16331521	-	slr0488	-	hypothetical protein
2356	 49.12	0	2622526..2622981	+	151	16331522	-	slr0489	-	hypothetical protein
2357	 50.57	0	2622968..2623402	+	144	16331523	-	slr0491	-	hypothetical protein
2358	 49.26	0	2623414..2624907	+	497	16331524	menE	slr0492	-	O-succinylbenzoic acid--CoA ligase
2359	 50.65	0	2625095..2625481	+	128	16331525	rfbM	slr0493	-	phosphomannose isomerase
2360	 49.70	0	2625478..2626479	-	333	16331526	-	sll0456	-	hypothetical protein
2361	 53.07	0	2626573..2627874	-	433	16331527	thrA	sll0455	-	homoserine dehydrogenase
2362	 46.83	0	2628002..2628742	+	246	16331528	-	slr0495	-	lipopeptide antibiotics iturin a biosynthesis protein
2363	 48.79	0	2628783..2629112	+	109	16331529	-	slr0496	-	hypothetical protein
2364	 50.50	0	2629271..2630266	-	331	16331530	pheS	sll0454	-	phenylalanyl-tRNA synthetase subunit alpha
2365	 48.26	0	2630469..2631071	-	200	16331531	-	sll0691	-	hypothetical protein
2366	 40.05	-1	2631207..2631608	-	133	16331532	vapC	sll0690	-	virulence associated protein C
2367	 38.76	-1	2631611..2631868	-	85	16331533	-	ssl1300	-	PEMI-like protein
2368	 51.30	0	2632124..2633509	-	461	16331534	-	sll0689	-	Na/H+ antiporter
2369	 48.38	0	2633852..2634655	-	267	16331535	-	sll0688	-	hypothetical protein
2370	 50.18	0	2634660..2635217	-	185	16331536	-	sll0687	-	RNA polymerase sigma factor
2371	 50.60	0	2635219..2636046	-	275	16331537	-	sll0686	-	hypothetical protein
2372	 51.74	0	2636236..2636724	-	162	16331538	-	sll0685	-	hypothetical protein
2373	 50.31	0	2636828..2637628	-	266	16331539	pstB	sll0684	-	phosphate transport ATP-binding protein; PstB
2374	 48.02	0	2637743..2638552	-	269	16331540	pstB	sll0683	-	phosphate transport ATP-binding protein; PstB
2375	 53.24	+1	2638578..2639441	-	287	16331541	pstA	sll0682	-	phosphate transport system permease protein; PstA
2376	 48.64	0	2639627..2640580	-	317	16331542	pstC	sll0681	-	phosphate transport system permease protein; PstC
2377	 50.95	0	2640662..2641813	-	383	16331543	pstS	sll0680	-	phosphate-binding periplasmic protein precursor
2378	 48.17	0	2642135..2643145	-	336	16331544	sphX	sll0679	-	SphX protein precursor
2379	 50.30	0	2643403..2644569	+	388	16331545	-	slr0719	-	hypothetical protein
2380	 51.16	0	2644795..2645097	+	100	16331546	rpsN	slr0628	-	30S ribosomal protein S14
2381	 53.36	+1	2645271..2646074	-	267	16331547	im30	sll0617	-	chloroplast membrane-associated 30 kD protein
2382	 51.36	0	2646623..2647282	+	219	16331548	-	slr0630	-	hypothetical protein
2383	 49.12	0	2647386..2650184	-	932	16331549	secA	sll0616	-	preprotein translocase subunit SecA
2384	 47.02	0	2650377..2650997	-	206	16331550	-	sll0615	-	transmembrane protein FT27
2385	 48.37	0	2651440..2651838	-	132	16331551	-	sll0614	-	hypothetical protein
2386	 51.84	0	2651866..2652951	-	361	16331552	ruvB	sll0613	-	Holliday junction DNA helicase B
2387	 55.25	+1	2653153..2655123	+	656	16331553	thiG	slr0633	-	ThiG protein
2388	 47.50	0	2655459..2656037	+	192	16331554	-	slr0634	-	hypothetical protein
2389	 49.84	0	2656139..2657077	+	312	16331555	-	slr0635	-	hypothetical protein
2390	 46.53	0	2657148..2657594	-	148	16331556	-	sll0611	-	hypothetical protein
2391	 51.98	0	2657850..2658632	+	260	16331557	cobS	slr0636	-	cobalamin synthase
2392	 52.80	0	2659080..2659865	+	261	16331558	-	slr0637	-	hypothetical protein
2393	 49.67	0	2659905..2660804	+	299	16331559	glyQ	slr0638	-	glycyl-tRNA synthetase subunit alpha
2394	 40.85	-1	2660854..2661744	+	296	16331560	-	slr0639	-	hypothetical protein
2395	 51.96	0	2661959..2663284	+	441	16331561	-	slr0640	-	sensory transduction histidine kinase
2396	 47.81	0	2663366..2663731	-	121	16331562	-	sll0609	-	hypothetical protein
2397	 54.60	+1	2663686..2664000	-	104	16331563	-	sll0608	-	hypothetical protein
2398	 51.99	0	2664403..2665887	+	494	16331564	-	slr0642	-	integral membrane protein
2399	 51.42	0	2666040..2667521	+	493	16331565	-	slr0643	-	hypothetical protein
2400	 52.41	0	2667542..2668972	-	476	16331566	-	sll0606	-	hypothetical protein
2401	 51.40	0	2669089..2670156	+	355	16331567	-	slr0644	-	hypothetical protein
2402	 47.76	0	2670115..2671902	-	595	16331568	menD	sll0603	-	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase
2403	 52.36	0	2671895..2673970	-	691	16331569	-	sll0602	-	hypothetical protein
2404	 48.95	0	2674101..2674721	+	206	16331570	-	slr0645	-	hypothetical protein
2405	 52.36	0	2674736..2676196	+	486	16331571	dacB	slr0646	-	penicillin-binding protein 4
2406	 53.72	+1	2676937..2677755	-	272	16331572	-	sll0601	-	hypothetical protein
2407	 48.34	0	2678140..2679738	+	532	16331573	metG	slr0649	-	methionyl-tRNA synthetase
2408	 47.52	0	2679884..2680489	+	201	16331574	-	slr0650	-	hypothetical protein
2409	 49.06	0	2680550..2681872	-	440	16331575	dgt	sll0398	-	dGTP triphosphohydrolase
2410	 48.32	0	2681894..2682547	-	217	16331576	-	sll0397	-	hypothetical protein
2411	 51.56	0	2682552..2683226	-	224	16331577	-	sll0396	-	OmpR subfamily
2412	 52.43	0	2683443..2684081	-	212	16331578	-	sll0395	-	hypothetical protein
2413	 49.60	0	2684198..2684824	-	208	16331579	-	sll0394	-	hypothetical protein
2414	 51.36	0	2684959..2687055	+	698	16331580	napA	slr0415	-	Na(+)/H(+) antiporter
2415	 43.08	-1	2687109..2687549	+	146	16331581	-	slr0416	-	hypothetical protein
2416	 53.31	+1	2687952..2690534	+	860	16331582	gyrA	slr0417	-	DNA gyrase subunit A
2417	 53.73	+1	2690534..2691445	+	303	16331583	-	slr0418	-	hypothetical protein
2418	 49.82	0	2691528..2692382	-	284	16331584	-	sll0385	-	ABC transporter
2419	 49.74	0	2692304..2693077	-	257	16331585	-	sll0384	-	hypothetical protein
2420	 51.47	0	2693080..2693724	-	214	16331586	cbiM	sll0383	-	cobalt transport protein CbiM
2421	 51.60	0	2693725..2694255	-	176	16331587	-	sll0382	-	hypothetical protein
2422	 50.51	0	2694261..2695145	-	294	16331588	-	sll0381	-	hypothetical protein
2423	 50.00	0	2695620..2695775	+	51	16331589	-	ssr0692	-	hypothetical protein
2424	 48.23	0	2696125..2696406	-	93	16331590	-	ssl0750	-	hypothetical protein
2425	 41.67	-1	2696549..2696836	+	95	16331591	-	ssr0693	-	hypothetical protein
2426	 48.36	0	2697151..2698248	-	365	16331592	rfbW	sll0380	-	mannosyl transferase
2427	 50.45	0	2698258..2699145	-	295	16331593	lpxA	sll0379	-	UDP-N-acetylglucosamine acyltransferase
2428	 51.75	0	2699172..2699855	+	227	16331594	-	slr0420	-	hypothetical protein
2429	 40.00	-1	2700069..2700818	+	249	16331595	-	slr0421	-	hypothetical protein
2430	 50.38	0	2700944..2701735	-	263	16331596	cysG	sll0378	-	uroporphyrin-III C-methyltransferase
2431	 47.19	0	2701931..2705530	-	1199	16331597	mfd	sll0377	-	transcription-repair coupling factor
2432	 49.35	0	2705678..2705983	-	101	16331598	-	sll0376	-	hypothetical protein
2433	 53.52	+1	2706733..2707698	+	321	16331599	rlpA	slr0423	-	rare lipoprotein A
2434	 48.67	0	2708257..2709006	-	249	16331600	braG	sll0374	-	high-affinity branched-chain amino acid transport ATP-binding protein
2435	 51.15	0	2709084..2710385	-	433	16331601	proA	sll0373	-	gamma-glutamyl phosphate reductase
2436	 48.07	0	2710511..2711107	-	198	16331602	-	sll0372	-	hypothetical protein
2437	 42.01	-1	2711419..2711637	-	72	16331603	-	ssl0738	-	hypothetical protein
2438	 31.42	-2	2711740..2713305	-	521	16331604	-	sll0371	-	hypothetical protein
2439	 51.39	0	2713371..2716616	-	1081	161344753	carB	sll0370	-	carbamoyl phosphate synthase large subunit
2440	 46.62	0	2716735..2717163	-	142	16331606	-	sll0369	-	hypothetical protein
2441	 49.35	0	2717177..2717713	-	178	16331607	pyrR	sll0368	-	pyrimidine regulatory protein PyrR
2442	 46.10	0	2718050..2718754	+	234	16331608	folE	slr0426	-	GTP cyclohydrolase I
2443	 52.84	0	2718963..2720213	+	416	16331609	-	slr0427	-	competence damage-inducible protein A
2444	 51.66	0	2720250..2720702	-	150	16331610	-	sll0189	-	hypothetical protein
2445	 56.18	+1	2720729..2722234	-	501	16331611	-	sll0188	-	hypothetical protein
48.22	MEAN

4.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.