IslandPathversion 1.0

IslandPath Analysis: Synechocystis sp. PCC 6803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.22 STD DEV: 4.98
Synechocystis sp. PCC 6803, complete genome - 1..3573470
3172 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2314	 53.03	0	2576889..2577416	+	175	16331481	dgkA	slr0054	-	diacylglycerol kinase
2315	 54.47	+1	2577552..2578043	+	163	16331482	trpG	slr0055	-	anthranilate synthase component II
2316	 51.18	0	2578187..2579161	+	324	16331483	chlG	slr0056	-	bacteriochlorophyll/chlorophyll a synthase
2317	 50.00	0	2579308..2580135	-	275	16331484	-	sll0064	-	hypothetical protein
2318	 40.07	-1	2580291..2580557	-	88	109150012	-	sll0063a	-	hypothetical protein
2319	 51.26	0	2580710..2581897	-	395	16331485	-	sll0063	-	hypothetical protein
2320	 50.00	0	2581944..2582393	-	149	16331486	-	sll0062	-	hypothetical protein
2321	 48.25	0	2582441..2582869	+	142	16331487	-	slr0058	-	hypothetical protein
2322	 45.10	0	2583030..2583335	+	101	16331488	-	slr0059	-	hypothetical protein
2323	 41.71	-1	2583410..2584519	+	369	16331489	-	slr0060	-	hypothetical protein
2324	 46.40	0	2584793..2585458	+	221	16331490	-	slr0061	-	hypothetical protein
2325	 45.41	0	2585489..2586523	-	344	16331491	-	sll0060	-	hypothetical protein
2326	 50.55	0	2586572..2588650	-	692	16331492	dnaK	sll0058	-	molecular chaperone DnaK
2327	 52.67	0	2588884..2589633	-	249	16331493	grpE	sll0057	-	heat shock protein; GrpE
2328	 51.56	0	2589851..2591869	+	672	16331494	gspE	slr0063	-	general secretion pathway protein E
2329	 50.22	0	2591953..2593107	+	384	16331495	-	slr0064	-	hypothetical protein
2330	 50.08	0	2593329..2593967	+	212	16331496	-	slr0065	-	hypothetical protein
2331	 51.13	0	2594055..2595161	+	368	16331497	ribG	slr0066	-	riboflavin biosynthesis protein
2332	 51.75	0	2595280..2596566	-	428	16331498	-	sll0055	-	processing protease
2333	 54.14	+1	2596787..2597848	+	353	16331499	-	slr0067	-	put. ATPase
2334	 52.04	0	2597851..2599197	-	448	16331500	accC	sll0053	-	acetyl-CoA carboxylase biotin carboxylase subunit
2335	 41.97	-1	2599315..2599974	+	219	16331501	-	slr0069	-	hypothetical protein
2336	 52.08	0	2600012..2600491	-	159	16331502	-	sll0051	-	hypothetical protein
2337	 50.96	0	2600705..2601697	+	330	16331503	fmt	slr0070	-	methionyl-tRNA formyltransferase
2338	 51.87	0	2601733..2602536	+	267	16331504	natA	slr0467	-	component of ABC transporter for natural amino acids
2339	 35.39	-2	2602472..2603782	+	436	16331505	-	slr0468	-	hypothetical protein
2340	 51.72	0	2603947..2604555	+	202	16331506	rpsD	slr0469	-	30S ribosomal protein S4
2341	 49.50	0	2604794..2605894	-	366	16331507	-	sll0462	-	hypothetical protein
2342	 52.81	0	2606095..2607357	-	420	16331508	proA	sll0461	-	gamma-glutamyl phosphate reductase
2343	 50.11	0	2607812..2610058	+	748	16331509	phy	slr0473	-	phytochrome
2344	 45.95	0	2610073..2610516	+	147	16331510	-	slr0474	-	CheY family protein
2345	 44.93	0	2610706..2612715	-	669	16331511	uvrB	sll0459	-	excinuclease ABC subunit B
2346	 55.96	+1	2612907..2613317	+	136	16331512	-	slr0476	-	hypothetical protein
2347	 49.17	0	2613481..2613600	-	39	16331513	psbX	sml0002	-	photosystem II PsbX protein
2348	 52.29	0	2613717..2614370	+	217	16331514	purN	slr0477	-	phosphoribosylglycinamide formyltransferase
2349	 50.90	0	2614367..2615089	+	240	16331515	-	slr0479	-	hypothetical protein
2350	 51.13	0	2615100..2616599	+	499	16331516	ycf46	slr0480	-	hypothetical protein
2351	 49.67	0	2616624..2617382	+	252	16331517	-	slr0482	-	hypothetical protein
2352	 46.89	0	2617440..2617889	+	149	16331518	-	slr0483	-	hypothetical protein
2353	 51.92	0	2618067..2620094	+	675	16331519	-	slr0484	-	sensory transduction histidine kinase
2354	 50.81	0	2620171..2620662	+	163	16331520	-	slr0487	-	hypothetical protein
2355	 51.25	0	2620798..2622399	+	533	16331521	-	slr0488	-	hypothetical protein
2356	 49.12	0	2622526..2622981	+	151	16331522	-	slr0489	-	hypothetical protein
2357	 50.57	0	2622968..2623402	+	144	16331523	-	slr0491	-	hypothetical protein
2358	 49.26	0	2623414..2624907	+	497	16331524	menE	slr0492	-	O-succinylbenzoic acid--CoA ligase
2359	 50.65	0	2625095..2625481	+	128	16331525	rfbM	slr0493	-	phosphomannose isomerase
2360	 49.70	0	2625478..2626479	-	333	16331526	-	sll0456	-	hypothetical protein
2361	 53.07	0	2626573..2627874	-	433	16331527	thrA	sll0455	-	homoserine dehydrogenase
2362	 46.83	0	2628002..2628742	+	246	16331528	-	slr0495	-	lipopeptide antibiotics iturin a biosynthesis protein
2363	 48.79	0	2628783..2629112	+	109	16331529	-	slr0496	-	hypothetical protein
2364	 50.50	0	2629271..2630266	-	331	16331530	pheS	sll0454	-	phenylalanyl-tRNA synthetase subunit alpha
2365	 48.26	0	2630469..2631071	-	200	16331531	-	sll0691	-	hypothetical protein
2366	 40.05	-1	2631207..2631608	-	133	16331532	vapC	sll0690	-	virulence associated protein C
2367	 38.76	-1	2631611..2631868	-	85	16331533	-	ssl1300	-	PEMI-like protein
2368	 51.30	0	2632124..2633509	-	461	16331534	-	sll0689	-	Na/H+ antiporter
2369	 48.38	0	2633852..2634655	-	267	16331535	-	sll0688	-	hypothetical protein
2370	 50.18	0	2634660..2635217	-	185	16331536	-	sll0687	-	RNA polymerase sigma factor
2371	 50.60	0	2635219..2636046	-	275	16331537	-	sll0686	-	hypothetical protein
2372	 51.74	0	2636236..2636724	-	162	16331538	-	sll0685	-	hypothetical protein
2373	 50.31	0	2636828..2637628	-	266	16331539	pstB	sll0684	-	phosphate transport ATP-binding protein; PstB
2374	 48.02	0	2637743..2638552	-	269	16331540	pstB	sll0683	-	phosphate transport ATP-binding protein; PstB
2375	 53.24	+1	2638578..2639441	-	287	16331541	pstA	sll0682	-	phosphate transport system permease protein; PstA
2376	 48.64	0	2639627..2640580	-	317	16331542	pstC	sll0681	-	phosphate transport system permease protein; PstC
2377	 50.95	0	2640662..2641813	-	383	16331543	pstS	sll0680	-	phosphate-binding periplasmic protein precursor
2378	 48.17	0	2642135..2643145	-	336	16331544	sphX	sll0679	-	SphX protein precursor
2379	 50.30	0	2643403..2644569	+	388	16331545	-	slr0719	-	hypothetical protein
2380	 51.16	0	2644795..2645097	+	100	16331546	rpsN	slr0628	-	30S ribosomal protein S14
2381	 53.36	+1	2645271..2646074	-	267	16331547	im30	sll0617	-	chloroplast membrane-associated 30 kD protein
2382	 51.36	0	2646623..2647282	+	219	16331548	-	slr0630	-	hypothetical protein
2383	 49.12	0	2647386..2650184	-	932	16331549	secA	sll0616	-	preprotein translocase subunit SecA
2384	 47.02	0	2650377..2650997	-	206	16331550	-	sll0615	-	transmembrane protein FT27
2385	 48.37	0	2651440..2651838	-	132	16331551	-	sll0614	-	hypothetical protein
2386	 51.84	0	2651866..2652951	-	361	16331552	ruvB	sll0613	-	Holliday junction DNA helicase B
2387	 55.25	+1	2653153..2655123	+	656	16331553	thiG	slr0633	-	ThiG protein
2388	 47.50	0	2655459..2656037	+	192	16331554	-	slr0634	-	hypothetical protein
2389	 49.84	0	2656139..2657077	+	312	16331555	-	slr0635	-	hypothetical protein
2390	 46.53	0	2657148..2657594	-	148	16331556	-	sll0611	-	hypothetical protein
2391	 51.98	0	2657850..2658632	+	260	16331557	cobS	slr0636	-	cobalamin synthase
2392	 52.80	0	2659080..2659865	+	261	16331558	-	slr0637	-	hypothetical protein
2393	 49.67	0	2659905..2660804	+	299	16331559	glyQ	slr0638	-	glycyl-tRNA synthetase subunit alpha
2394	 40.85	-1	2660854..2661744	+	296	16331560	-	slr0639	-	hypothetical protein
2395	 51.96	0	2661959..2663284	+	441	16331561	-	slr0640	-	sensory transduction histidine kinase
2396	 47.81	0	2663366..2663731	-	121	16331562	-	sll0609	-	hypothetical protein
2397	 54.60	+1	2663686..2664000	-	104	16331563	-	sll0608	-	hypothetical protein
2398	 51.99	0	2664403..2665887	+	494	16331564	-	slr0642	-	integral membrane protein
2399	 51.42	0	2666040..2667521	+	493	16331565	-	slr0643	-	hypothetical protein
2400	 52.41	0	2667542..2668972	-	476	16331566	-	sll0606	-	hypothetical protein
2401	 51.40	0	2669089..2670156	+	355	16331567	-	slr0644	-	hypothetical protein
2402	 47.76	0	2670115..2671902	-	595	16331568	menD	sll0603	-	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase
2403	 52.36	0	2671895..2673970	-	691	16331569	-	sll0602	-	hypothetical protein
2404	 48.95	0	2674101..2674721	+	206	16331570	-	slr0645	-	hypothetical protein
2405	 52.36	0	2674736..2676196	+	486	16331571	dacB	slr0646	-	penicillin-binding protein 4
2406	 53.72	+1	2676937..2677755	-	272	16331572	-	sll0601	-	hypothetical protein
2407	 48.34	0	2678140..2679738	+	532	16331573	metG	slr0649	-	methionyl-tRNA synthetase
2408	 47.52	0	2679884..2680489	+	201	16331574	-	slr0650	-	hypothetical protein
2409	 49.06	0	2680550..2681872	-	440	16331575	dgt	sll0398	-	dGTP triphosphohydrolase
2410	 48.32	0	2681894..2682547	-	217	16331576	-	sll0397	-	hypothetical protein
2411	 51.56	0	2682552..2683226	-	224	16331577	-	sll0396	-	OmpR subfamily
2412	 52.43	0	2683443..2684081	-	212	16331578	-	sll0395	-	hypothetical protein
2413	 49.60	0	2684198..2684824	-	208	16331579	-	sll0394	-	hypothetical protein
48.22	MEAN

4.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.