IslandPathversion 1.0

IslandPath Analysis: Synechocystis sp. PCC 6803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.22 STD DEV: 4.98
Synechocystis sp. PCC 6803, complete genome - 1..3573470
3172 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2249	 50.12	0	2509162..2509584	+	140	16331416	-	slr0217	-	hypothetical protein
2250	 50.00	0	2509823..2510014	+	63	16331417	-	ssr0349	-	hypothetical protein
2251	 47.21	0	2510273..2511295	-	340	16331418	-	sll0209	-	hypothetical protein
2252	 49.43	0	2511514..2512209	-	231	16331419	-	sll0208	-	hypothetical protein
2253	 49.49	0	2512467..2513648	-	393	16331420	rfbA	sll0207	-	glucose-1-phosphate thymidylyltransferase
2254	 50.99	0	2513806..2515974	+	722	16331421	glyS	slr0220	-	glycyl-tRNA synthetase subunit beta
2255	 36.77	-2	2516150..2516527	-	125	16331422	-	sll0205	-	hypothetical protein
2256	 52.15	0	2516814..2518184	-	456	16331423	gidA	sll0204	-	tRNA (uracil-5-)-methyltransferase Gid
2257	 39.33	-1	2518321..2521857	+	1178	16331424	-	slr0222	-	hybrid sensory kinase
2258	 49.06	0	2521830..2523737	-	635	16331425	gidA	sll0202	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
2259	 36.21	-2	2523867..2524562	+	231	16331426	-	slr0224	-	hypothetical protein
2260	 36.77	-2	2524573..2525067	-	164	16331427	-	sll0201	-	transposase
2261	 36.39	-2	2525061..2525420	-	119	16331428	-	sll0200	-	transposase
2262	 51.97	0	2525827..2526207	-	126	16331429	petE	sll0199	-	plastocyanin
2263	 46.38	0	2526633..2528081	+	482	16331430	-	slr0226	-	hypothetical protein
2264	 48.09	0	2528160..2528735	-	191	16331431	-	sll0198	-	hypothetical protein
2265	 52.34	0	2529009..2530892	+	627	16331432	ftsH	slr0228	-	cell division protein; FtsH
2266	 51.01	0	2530968..2531612	-	214	16331433	-	sll0195	-	ATP-dependent proteinase; BsgA
2267	 50.85	0	2531666..2532430	-	254	16331434	ycf43	sll0194	-	hypothetical protein
2268	 46.96	0	2532823..2533695	+	290	16331435	mmsB	slr0229	-	3-hydroxyisobutyrate dehydrogenase
2269	 36.63	-2	2534106..2534954	+	282	16331436	-	slr0230	-	transposase
2270	 42.48	-1	2534997..2535455	+	152	16331437	-	slr0231	-	hypothetical protein
2271	 51.97	0	2535487..2536758	-	423	16331438	-	sll0192	-	hypothetical protein
2272	 52.97	0	2536824..2537480	+	218	16331439	-	slr0232	-	hypothetical protein
2273	 50.94	0	2537521..2537838	+	105	16331440	trxM	slr0233	-	thioredoxin M
2274	 37.61	-2	2537896..2538807	-	303	16331441	-	sll0191	-	hypothetical protein
2275	 52.20	0	2539000..2540658	-	552	16331442	groEL-2	sll0416	-	60kD chaperonin 2
2276	 48.83	0	2540821..2541885	-	354	16331443	-	sll0415	-	ABC transporter
2277	 45.88	0	2541864..2542724	-	286	16331444	-	sll0414	-	hypothetical protein
2278	 52.99	0	2542935..2543687	+	250	16331445	-	slr0431	-	hypothetical protein
2279	 57.82	+1	2543725..2544018	-	97	16331446	-	ssl0788	-	hypothetical protein
2280	 57.33	+1	2544024..2544323	-	99	16331447	-	ssl0787	-	hypothetical protein
2281	 51.12	0	2544374..2544997	-	207	16331448	-	sll0413	-	hypothetical protein
2282	 49.21	0	2545122..2546381	-	419	16331449	-	sll0412	-	hypothetical protein
2283	 51.70	0	2546527..2547027	-	166	16331450	-	sll0410	-	hypothetical protein
2284	 52.23	0	2547067..2548029	-	320	16331451	-	sll0409	-	O-succinylbenzoate synthase
2285	 50.37	0	2548133..2549341	-	402	16331452	-	sll0408	-	hypothetical protein
2286	 50.71	0	2549388..2549951	+	187	16331453	efp	slr0434	-	elongation factor P
2287	 54.19	+1	2550059..2550523	+	154	16331454	accB	slr0435	-	biotin carboxyl carrier protein of acetyl-CoA carboxylase
2288	 52.80	0	2550753..2551646	+	297	16331455	ccmK	slr0436	-	carbon dioxide concentrating mechanism protein; CcmK
2289	 45.27	0	2551682..2552167	-	161	16331456	-	sll0406	-	hypothetical protein
2290	 43.77	0	2552177..2552962	-	261	16331457	-	sll0405	-	hypothetical protein
2291	 48.88	0	2553961..2555439	-	492	16331458	glcD	sll0404	-	glycolate oxidase subunit; GlcD
2292	 47.53	0	2555593..2555916	+	107	16331459	-	slr0438	-	hypothetical protein
2293	 31.68	-2	2556081..2556503	-	140	16331460	-	sll0403	-	hypothetical protein
2294	 48.87	0	2556814..2558319	+	501	16331461	-	slr0439	-	hypothetical protein
2295	 39.49	-1	2558423..2558617	-	64	16331462	-	ssl0769	-	transposase
2296	 51.11	0	2558820..2559989	-	389	16331463	aspC	sll0402	-	aspartate aminotransferase
2297	 50.42	0	2560112..2561305	-	397	16331464	gltA	sll0401	-	methylcitrate synthase
2298	 51.92	0	2561499..2561993	-	164	16331465	-	sll0400	-	hypothetical protein
2299	 44.90	0	2562056..2562859	+	267	16331466	-	slr0440	-	hypothetical protein
2300	 50.63	0	2562953..2564149	+	398	16331467	-	slr0049	-	hypothetical protein
2301	 49.07	0	2564175..2564390	+	71	16331468	ycf40	ssr0102	-	hypothetical protein
2302	 51.07	0	2564465..2565445	+	326	16331469	-	slr0050	-	ribonuclease Z
2303	 48.98	0	2565427..2566110	-	227	16331470	-	sll0072	-	hypothetical protein
2304	 40.02	-1	2566142..2567143	-	333	16331471	-	sll0071	-	hypothetical protein
2305	 45.85	0	2567237..2568091	-	284	16331472	purU	sll0070	-	formyltetrahydrofolate deformylase
2306	 48.23	0	2568182..2568973	+	263	16331473	icfA	slr0051	-	carbonic anhydrase
2307	 48.90	0	2568975..2569745	-	256	16331474	-	sll0069	-	hypothetical protein
2308	 52.31	0	2569772..2573491	-	1239	16331475	-	sll0068	-	hypothetical protein
2309	 49.55	0	2573649..2574203	-	184	16331476	gst	sll0067	-	glutathione S-transferase
2310	 52.85	0	2574297..2575244	-	315	16331477	-	sll0066	-	hypothetical protein
2311	 53.09	0	2575344..2575910	-	188	16331478	ilvH	sll0065	-	acetolactate synthase 3 regulatory subunit
2312	 54.50	+1	2576092..2576280	+	62	16331479	-	ssr0109	-	hypothetical protein
2313	 50.56	0	2576285..2576824	+	179	16331480	-	slr0053	-	putative metalloprotease
2314	 53.03	0	2576889..2577416	+	175	16331481	dgkA	slr0054	-	diacylglycerol kinase
2315	 54.47	+1	2577552..2578043	+	163	16331482	trpG	slr0055	-	anthranilate synthase component II
2316	 51.18	0	2578187..2579161	+	324	16331483	chlG	slr0056	-	bacteriochlorophyll/chlorophyll a synthase
2317	 50.00	0	2579308..2580135	-	275	16331484	-	sll0064	-	hypothetical protein
2318	 40.07	-1	2580291..2580557	-	88	109150012	-	sll0063a	-	hypothetical protein
2319	 51.26	0	2580710..2581897	-	395	16331485	-	sll0063	-	hypothetical protein
2320	 50.00	0	2581944..2582393	-	149	16331486	-	sll0062	-	hypothetical protein
2321	 48.25	0	2582441..2582869	+	142	16331487	-	slr0058	-	hypothetical protein
2322	 45.10	0	2583030..2583335	+	101	16331488	-	slr0059	-	hypothetical protein
2323	 41.71	-1	2583410..2584519	+	369	16331489	-	slr0060	-	hypothetical protein
2324	 46.40	0	2584793..2585458	+	221	16331490	-	slr0061	-	hypothetical protein
2325	 45.41	0	2585489..2586523	-	344	16331491	-	sll0060	-	hypothetical protein
2326	 50.55	0	2586572..2588650	-	692	16331492	dnaK	sll0058	-	molecular chaperone DnaK
2327	 52.67	0	2588884..2589633	-	249	16331493	grpE	sll0057	-	heat shock protein; GrpE
2328	 51.56	0	2589851..2591869	+	672	16331494	gspE	slr0063	-	general secretion pathway protein E
2329	 50.22	0	2591953..2593107	+	384	16331495	-	slr0064	-	hypothetical protein
2330	 50.08	0	2593329..2593967	+	212	16331496	-	slr0065	-	hypothetical protein
2331	 51.13	0	2594055..2595161	+	368	16331497	ribG	slr0066	-	riboflavin biosynthesis protein
2332	 51.75	0	2595280..2596566	-	428	16331498	-	sll0055	-	processing protease
2333	 54.14	+1	2596787..2597848	+	353	16331499	-	slr0067	-	put. ATPase
2334	 52.04	0	2597851..2599197	-	448	16331500	accC	sll0053	-	acetyl-CoA carboxylase biotin carboxylase subunit
2335	 41.97	-1	2599315..2599974	+	219	16331501	-	slr0069	-	hypothetical protein
2336	 52.08	0	2600012..2600491	-	159	16331502	-	sll0051	-	hypothetical protein
2337	 50.96	0	2600705..2601697	+	330	16331503	fmt	slr0070	-	methionyl-tRNA formyltransferase
2338	 51.87	0	2601733..2602536	+	267	16331504	natA	slr0467	-	component of ABC transporter for natural amino acids
2339	 35.39	-2	2602472..2603782	+	436	16331505	-	slr0468	-	hypothetical protein
2340	 51.72	0	2603947..2604555	+	202	16331506	rpsD	slr0469	-	30S ribosomal protein S4
2341	 49.50	0	2604794..2605894	-	366	16331507	-	sll0462	-	hypothetical protein
2342	 52.81	0	2606095..2607357	-	420	16331508	proA	sll0461	-	gamma-glutamyl phosphate reductase
2343	 50.11	0	2607812..2610058	+	748	16331509	phy	slr0473	-	phytochrome
2344	 45.95	0	2610073..2610516	+	147	16331510	-	slr0474	-	CheY family protein
2345	 44.93	0	2610706..2612715	-	669	16331511	uvrB	sll0459	-	excinuclease ABC subunit B
2346	 55.96	+1	2612907..2613317	+	136	16331512	-	slr0476	-	hypothetical protein
2347	 49.17	0	2613481..2613600	-	39	16331513	psbX	sml0002	-	photosystem II PsbX protein
2348	 52.29	0	2613717..2614370	+	217	16331514	purN	slr0477	-	phosphoribosylglycinamide formyltransferase
48.22	MEAN

4.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.