IslandPathversion 1.0

IslandPath Analysis: Synechocystis sp. PCC 6803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.22 STD DEV: 4.98
Synechocystis sp. PCC 6803, complete genome - 1..3573470
3172 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2184	 51.72	0	2428010..2428678	+	222	16331351	petB	slr0342	-	cytochrome b6
2185	 49.69	0	2428809..2429291	+	160	16331352	petD	slr0343	-	cytochrome b6-f complex subunit IV
2186	 38.19	-2	2429543..2430964	+	473	16331353	rfbW	slr0344	-	mannosyl transferase
2187	 50.49	0	2431092..2431499	+	135	16331354	-	slr0345	-	hypothetical protein
2188	 48.84	0	2431704..2432438	+	244	16331355	rnc	slr0346	-	ribonuclease III
2189	 42.40	-1	2432459..2434762	-	767	16331356	hypF	sll0322	-	transcriptional regulatory protein; HypF
2190	 47.09	0	2434808..2436304	-	498	16331357	-	sll0321	-	hypothetical protein
2191	 44.27	0	2436443..2437228	+	261	16331358	-	slr0347	-	hypothetical protein
2192	 48.17	0	2437235..2437888	-	217	16331359	rnd	sll0320	-	ribonuclease D
2193	 53.69	+1	2437922..2438815	-	297	16331360	-	sll0319	-	hypothetical protein
2194	 47.91	0	2439092..2440312	+	406	16331361	-	slr0348	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
2195	 52.58	0	2440295..2440933	-	212	16331362	-	sll0318	-	hypothetical protein
2196	 45.93	0	2441098..2441883	+	261	16331363	-	slr0350	-	transposase
2197	 50.44	0	2442058..2443308	+	416	16331364	-	slr0351	-	hypothetical protein
2198	 30.83	-2	2443461..2443859	-	132	16331365	-	sll0317	-	transposase
2199	 36.63	-2	2443999..2444847	+	282	16331366	-	slr0352	-	transposase
2200	 35.53	-2	2444743..2445426	-	227	16331367	-	sll0315	-	transposase
2201	 39.34	-1	2445550..2445915	+	121	16331368	-	slr0353	-	hypothetical protein
2202	 46.56	0	2446395..2447339	-	314	16331369	-	sll0314	-	hypothetical protein
2203	 50.39	0	2447491..2448123	+	210	16331370	-	slr0354	-	ABC transporter
2204	 46.45	0	2448222..2448404	-	60	16331371	rps21	ssl0601	-	30S ribosomal protein S21
2205	 51.51	0	2454087..2455082	+	331	16331372	-	slr0355	-	hypothetical protein
2206	 50.08	0	2455121..2455711	+	196	16331373	-	slr0356	-	hypothetical protein
2207	 48.22	0	2455755..2456768	-	337	16331374	-	sll0312	-	OppB in a binding protein-dependent transport system
2208	 51.71	0	2456935..2458278	+	447	16331375	hisS	slr0357	-	histidyl-tRNA synthetase
2209	 48.80	0	2458253..2459377	+	374	16331376	-	slr0358	-	hypothetical protein
2210	 52.70	0	2459374..2460282	-	302	16331377	-	sll0310	-	hypothetical protein
2211	 49.36	0	2460360..2461058	-	232	16331378	-	sll0309	-	hypothetical protein
2212	 37.35	-2	2461358..2462179	-	273	16331379	-	sll0024	-	hypothetical protein
2213	 43.82	0	2462212..2463555	-	447	16331380	-	sll0023	-	hypothetical protein
2214	 52.00	0	2463555..2464304	-	249	16331381	-	sll0022	-	hypothetical protein
2215	 52.38	0	2464527..2465009	+	160	16331382	-	slr0001	-	hypothetical protein
2216	 49.88	0	2465076..2466326	-	416	16331383	-	sll0021	-	hypothetical protein
2217	 53.04	0	2466407..2468872	-	821	16331384	clpC	sll0020	-	ATP-dependent Clp protease regulatory subunit
2218	 49.54	0	2469245..2470429	-	394	16331385	-	sll0019	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
2219	 51.57	0	2470591..2471670	-	359	16331386	cbbA	sll0018	-	fructose-1,6-bisphosphate aldolase
2220	 51.08	0	2471954..2473255	-	433	161344754	hemL	sll0017	-	glutamate-1-semialdehyde aminotransferase
2221	 49.91	0	2473645..2474796	-	383	16331388	mltA	sll0016	-	membrane-bound lytic transglycosylase A
2222	 48.17	0	2475195..2475848	+	217	16331389	-	slr0006	-	hypothetical protein
2223	 50.79	0	2476020..2476781	+	253	16331390	-	slr0007	-	hypothetical protein
2224	 52.80	0	2476853..2478136	+	427	16331391	ctpA	slr0008	-	carboxyl-terminal processing protease
2225	 53.08	0	2478414..2479826	+	470	16331392	rbcL	slr0009	-	ribulose bisophosphate carboxylase
2226	 47.96	0	2480028..2480444	+	138	16331393	rbcX	slr0011	-	unknown function
2227	 47.66	0	2480477..2480818	+	113	16331394	rbcS	slr0012	-	ribulose bisphosphate carboxylase small subunit
2228	 50.19	0	2481361..2481888	+	175	16331395	-	slr0013	-	hypothetical protein
2229	 49.08	0	2481984..2482688	+	234	16331396	mgtC	slr0014	-	Mg2+ transport ATPase
2230	 45.80	0	2482743..2483528	-	261	16331397	-	sll0012	-	transposase
2231	 49.37	0	2483643..2484827	+	394	16331398	lpxB	slr0015	-	lipid-A-disaccharide synthase
2232	 48.98	0	2484890..2485183	-	97	16331399	petF	ssl0020	-	ferredoxin
2233	 50.46	0	2485646..2486194	+	182	16331400	-	slr0016	-	hypothetical protein
2234	 54.59	+1	2486607..2487923	+	438	16331401	murZ	slr0017	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
2235	 50.11	0	2488028..2489428	+	466	16331402	fumC	slr0018	-	fumarate hydratase
2236	 45.67	0	2489484..2489864	-	126	16331403	-	sll0010	-	hypothetical protein
2237	 49.31	0	2490326..2493004	+	892	16331404	-	slr0019	-	hypothetical protein
2238	 37.25	-2	2493033..2493542	-	169	16331405	-	sll0008	-	hypothetical protein
2239	 47.22	0	2493578..2494153	-	191	16331406	-	sll0007	-	hypothetical protein
2240	 50.04	0	2494205..2495389	-	394	16331407	aspC	sll0006	-	aspartate aminotransferase
2241	 47.75	0	2495493..2497538	-	681	16331408	-	sll0005	-	ABC1-like
2242	 44.83	0	2497726..2500221	+	831	16331409	recG	slr0020	-	DNA recombinase
2243	 49.04	0	2500322..2501155	+	277	16331410	sppA	slr0021	-	protease IV
2244	 54.06	+1	2501221..2503878	-	885	16331411	ponA	sll0002	-	penicillin-binding protein 1A
2245	 51.81	0	2504415..2506043	+	542	16331412	guaA	slr0213	-	bifunctional GMP synthase/glutamine amidotransferase protein
2246	 43.37	0	2506131..2507405	+	424	16331413	-	slr0214	-	cytosine-specific methyltransferase
2247	 47.91	0	2507382..2508362	-	326	16331414	uppP	sll0210	-	undecaprenyl pyrophosphate phosphatase
2248	 52.51	0	2508477..2509034	+	185	16331415	cobU	slr0216	-	adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase
2249	 50.12	0	2509162..2509584	+	140	16331416	-	slr0217	-	hypothetical protein
2250	 50.00	0	2509823..2510014	+	63	16331417	-	ssr0349	-	hypothetical protein
2251	 47.21	0	2510273..2511295	-	340	16331418	-	sll0209	-	hypothetical protein
2252	 49.43	0	2511514..2512209	-	231	16331419	-	sll0208	-	hypothetical protein
2253	 49.49	0	2512467..2513648	-	393	16331420	rfbA	sll0207	-	glucose-1-phosphate thymidylyltransferase
2254	 50.99	0	2513806..2515974	+	722	16331421	glyS	slr0220	-	glycyl-tRNA synthetase subunit beta
2255	 36.77	-2	2516150..2516527	-	125	16331422	-	sll0205	-	hypothetical protein
2256	 52.15	0	2516814..2518184	-	456	16331423	gidA	sll0204	-	tRNA (uracil-5-)-methyltransferase Gid
2257	 39.33	-1	2518321..2521857	+	1178	16331424	-	slr0222	-	hybrid sensory kinase
2258	 49.06	0	2521830..2523737	-	635	16331425	gidA	sll0202	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
2259	 36.21	-2	2523867..2524562	+	231	16331426	-	slr0224	-	hypothetical protein
2260	 36.77	-2	2524573..2525067	-	164	16331427	-	sll0201	-	transposase
2261	 36.39	-2	2525061..2525420	-	119	16331428	-	sll0200	-	transposase
2262	 51.97	0	2525827..2526207	-	126	16331429	petE	sll0199	-	plastocyanin
2263	 46.38	0	2526633..2528081	+	482	16331430	-	slr0226	-	hypothetical protein
2264	 48.09	0	2528160..2528735	-	191	16331431	-	sll0198	-	hypothetical protein
2265	 52.34	0	2529009..2530892	+	627	16331432	ftsH	slr0228	-	cell division protein; FtsH
2266	 51.01	0	2530968..2531612	-	214	16331433	-	sll0195	-	ATP-dependent proteinase; BsgA
2267	 50.85	0	2531666..2532430	-	254	16331434	ycf43	sll0194	-	hypothetical protein
2268	 46.96	0	2532823..2533695	+	290	16331435	mmsB	slr0229	-	3-hydroxyisobutyrate dehydrogenase
2269	 36.63	-2	2534106..2534954	+	282	16331436	-	slr0230	-	transposase
2270	 42.48	-1	2534997..2535455	+	152	16331437	-	slr0231	-	hypothetical protein
2271	 51.97	0	2535487..2536758	-	423	16331438	-	sll0192	-	hypothetical protein
2272	 52.97	0	2536824..2537480	+	218	16331439	-	slr0232	-	hypothetical protein
2273	 50.94	0	2537521..2537838	+	105	16331440	trxM	slr0233	-	thioredoxin M
2274	 37.61	-2	2537896..2538807	-	303	16331441	-	sll0191	-	hypothetical protein
2275	 52.20	0	2539000..2540658	-	552	16331442	groEL-2	sll0416	-	60kD chaperonin 2
2276	 48.83	0	2540821..2541885	-	354	16331443	-	sll0415	-	ABC transporter
2277	 45.88	0	2541864..2542724	-	286	16331444	-	sll0414	-	hypothetical protein
2278	 52.99	0	2542935..2543687	+	250	16331445	-	slr0431	-	hypothetical protein
2279	 57.82	+1	2543725..2544018	-	97	16331446	-	ssl0788	-	hypothetical protein
2280	 57.33	+1	2544024..2544323	-	99	16331447	-	ssl0787	-	hypothetical protein
2281	 51.12	0	2544374..2544997	-	207	16331448	-	sll0413	-	hypothetical protein
2282	 49.21	0	2545122..2546381	-	419	16331449	-	sll0412	-	hypothetical protein
2283	 51.70	0	2546527..2547027	-	166	16331450	-	sll0410	-	hypothetical protein
48.22	MEAN

4.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.