IslandPathversion 1.0

IslandPath Analysis: Synechocystis sp. PCC 6803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.22 STD DEV: 4.98
Synechocystis sp. PCC 6803, complete genome - 1..3573470
3172 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2148	 39.58	-1	2394536..2394871	+	111	16331315	-	slr0771	-	hypothetical protein
2149	 50.10	0	2395103..2396629	+	508	16331316	chlB	slr0772	-	light-independent protochlorophyllide reductase subunit B
2150	 50.07	0	2396761..2397441	+	226	16331317	-	slr0773	-	hypothetical protein
2151	 50.09	0	2397478..2399118	-	546	16331318	-	sll0772	-	hypothetical protein
2152	 51.17	0	2399210..2400616	-	468	16331319	glcP	sll0771	-	glucose transport protein
2153	 53.49	+1	2400914..2402332	+	472	16331320	secD	slr0774	-	preprotein translocase subunit SecD
2154	 47.78	0	2402393..2403340	+	315	16331321	secF	slr0775	-	preprotein translocase subunit SecF
2155	 53.91	+1	2403473..2404507	+	344	16331322	lpxD	slr0776	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
2156	 50.85	0	2404615..2404968	-	117	16331323	rplT	sll0767	-	50S ribosomal protein L20
2157	 45.10	0	2405109..2405312	-	67	16331324	rpmI	ssl1426	-	50S ribosomal protein L35
2158	 52.73	0	2405409..2406140	-	243	16331325	radC	sll0766	-	DNA repair protein RadC
2159	 49.82	0	2406130..2406966	-	278	16331326	-	sll0765	-	hypothetical protein
2160	 49.29	0	2407565..2408686	-	373	16331327	livG	sll0764	-	high-affinity branched-chain amino acid transport ATP-binding protein
2161	 50.83	0	2408869..2409228	-	119	16331328	-	sll0763	-	hypothetical protein
2162	 51.00	0	2409194..2409544	-	116	16331329	-	sll0762	-	hypothetical protein
2163	 53.33	+1	2409572..2409931	-	119	16331330	-	sll0761	-	hypothetical protein
2164	 48.70	0	2410030..2410914	-	294	16331331	ycf38	sll0760	-	Ycf38
2165	 50.00	0	2411067..2412110	-	347	16331332	-	sll0759	-	ABC transporter
2166	 50.08	0	2412178..2412798	+	206	16331333	-	slr0779	-	hypothetical protein
2167	 51.88	0	2412826..2414313	-	495	16331334	purF	sll0757	-	amidophosphoribosyltransferase
2168	 52.08	0	2414584..2414679	+	31	16331335	psbT	smr0001	-	photosystem II reaction center protein T
2169	 47.94	0	2414833..2415318	+	161	16331336	-	slr0780	-	transcriptional regulator NrdR
2170	 46.47	0	2415410..2416018	-	202	16331337	-	sll0756	-	hypothetical protein
2171	 50.41	0	2416091..2416693	-	200	16331338	-	sll0755	-	thiol-specific antioxidant protein
2172	 54.23	+1	2416806..2417207	-	133	16331339	rbfA	sll0754	-	ribosome-binding factor A
2173	 48.26	0	2417266..2417466	-	66	16331340	ycf33	ssl1417	-	ycf33 gene product
2174	 52.88	0	2417577..2418461	-	294	16331341	folD	sll0753	-	methylenetetrahydrofolate dehydrogenase /methenyltetrahydrofolate cyclohydrolase
2175	 48.38	0	2418535..2419398	-	287	16331342	-	sll0752	-	hypothetical protein
2176	 49.41	0	2419385..2419894	-	169	16331343	ycf22	sll0751	-	hypothetical protein
2177	 49.72	0	2420030..2421445	+	471	16331344	-	slr0782	-	amine oxidase
2178	 46.35	0	2421536..2422687	-	383	16331345	sarA	sll0750	-	adaptive-response sensory kinase
2179	 52.00	0	2422833..2423432	-	199	16331346	-	sll0749	-	hypothetical protein
2180	 50.89	0	2423621..2424349	+	242	16331347	tpiA	slr0783	-	triosephosphate isomerase
2181	 47.21	0	2424368..2425390	+	340	16331348	-	slr0784	-	hypothetical protein
2182	 52.35	0	2425387..2426343	+	318	16331349	-	slr0341	-	hypothetical protein
2183	 50.97	0	2426297..2427787	-	496	16331350	-	sll0325	-	hypothetical protein
2184	 51.72	0	2428010..2428678	+	222	16331351	petB	slr0342	-	cytochrome b6
2185	 49.69	0	2428809..2429291	+	160	16331352	petD	slr0343	-	cytochrome b6-f complex subunit IV
2186	 38.19	-2	2429543..2430964	+	473	16331353	rfbW	slr0344	-	mannosyl transferase
2187	 50.49	0	2431092..2431499	+	135	16331354	-	slr0345	-	hypothetical protein
2188	 48.84	0	2431704..2432438	+	244	16331355	rnc	slr0346	-	ribonuclease III
2189	 42.40	-1	2432459..2434762	-	767	16331356	hypF	sll0322	-	transcriptional regulatory protein; HypF
2190	 47.09	0	2434808..2436304	-	498	16331357	-	sll0321	-	hypothetical protein
2191	 44.27	0	2436443..2437228	+	261	16331358	-	slr0347	-	hypothetical protein
2192	 48.17	0	2437235..2437888	-	217	16331359	rnd	sll0320	-	ribonuclease D
2193	 53.69	+1	2437922..2438815	-	297	16331360	-	sll0319	-	hypothetical protein
2194	 47.91	0	2439092..2440312	+	406	16331361	-	slr0348	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
2195	 52.58	0	2440295..2440933	-	212	16331362	-	sll0318	-	hypothetical protein
2196	 45.93	0	2441098..2441883	+	261	16331363	-	slr0350	-	transposase
2197	 50.44	0	2442058..2443308	+	416	16331364	-	slr0351	-	hypothetical protein
2198	 30.83	-2	2443461..2443859	-	132	16331365	-	sll0317	-	transposase
2199	 36.63	-2	2443999..2444847	+	282	16331366	-	slr0352	-	transposase
2200	 35.53	-2	2444743..2445426	-	227	16331367	-	sll0315	-	transposase
2201	 39.34	-1	2445550..2445915	+	121	16331368	-	slr0353	-	hypothetical protein
2202	 46.56	0	2446395..2447339	-	314	16331369	-	sll0314	-	hypothetical protein
2203	 50.39	0	2447491..2448123	+	210	16331370	-	slr0354	-	ABC transporter
2204	 46.45	0	2448222..2448404	-	60	16331371	rps21	ssl0601	-	30S ribosomal protein S21
2205	 51.51	0	2454087..2455082	+	331	16331372	-	slr0355	-	hypothetical protein
2206	 50.08	0	2455121..2455711	+	196	16331373	-	slr0356	-	hypothetical protein
2207	 48.22	0	2455755..2456768	-	337	16331374	-	sll0312	-	OppB in a binding protein-dependent transport system
2208	 51.71	0	2456935..2458278	+	447	16331375	hisS	slr0357	-	histidyl-tRNA synthetase
2209	 48.80	0	2458253..2459377	+	374	16331376	-	slr0358	-	hypothetical protein
2210	 52.70	0	2459374..2460282	-	302	16331377	-	sll0310	-	hypothetical protein
2211	 49.36	0	2460360..2461058	-	232	16331378	-	sll0309	-	hypothetical protein
2212	 37.35	-2	2461358..2462179	-	273	16331379	-	sll0024	-	hypothetical protein
2213	 43.82	0	2462212..2463555	-	447	16331380	-	sll0023	-	hypothetical protein
2214	 52.00	0	2463555..2464304	-	249	16331381	-	sll0022	-	hypothetical protein
2215	 52.38	0	2464527..2465009	+	160	16331382	-	slr0001	-	hypothetical protein
2216	 49.88	0	2465076..2466326	-	416	16331383	-	sll0021	-	hypothetical protein
2217	 53.04	0	2466407..2468872	-	821	16331384	clpC	sll0020	-	ATP-dependent Clp protease regulatory subunit
2218	 49.54	0	2469245..2470429	-	394	16331385	-	sll0019	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
2219	 51.57	0	2470591..2471670	-	359	16331386	cbbA	sll0018	-	fructose-1,6-bisphosphate aldolase
2220	 51.08	0	2471954..2473255	-	433	161344754	hemL	sll0017	-	glutamate-1-semialdehyde aminotransferase
2221	 49.91	0	2473645..2474796	-	383	16331388	mltA	sll0016	-	membrane-bound lytic transglycosylase A
2222	 48.17	0	2475195..2475848	+	217	16331389	-	slr0006	-	hypothetical protein
2223	 50.79	0	2476020..2476781	+	253	16331390	-	slr0007	-	hypothetical protein
2224	 52.80	0	2476853..2478136	+	427	16331391	ctpA	slr0008	-	carboxyl-terminal processing protease
2225	 53.08	0	2478414..2479826	+	470	16331392	rbcL	slr0009	-	ribulose bisophosphate carboxylase
2226	 47.96	0	2480028..2480444	+	138	16331393	rbcX	slr0011	-	unknown function
2227	 47.66	0	2480477..2480818	+	113	16331394	rbcS	slr0012	-	ribulose bisphosphate carboxylase small subunit
2228	 50.19	0	2481361..2481888	+	175	16331395	-	slr0013	-	hypothetical protein
2229	 49.08	0	2481984..2482688	+	234	16331396	mgtC	slr0014	-	Mg2+ transport ATPase
2230	 45.80	0	2482743..2483528	-	261	16331397	-	sll0012	-	transposase
2231	 49.37	0	2483643..2484827	+	394	16331398	lpxB	slr0015	-	lipid-A-disaccharide synthase
2232	 48.98	0	2484890..2485183	-	97	16331399	petF	ssl0020	-	ferredoxin
2233	 50.46	0	2485646..2486194	+	182	16331400	-	slr0016	-	hypothetical protein
2234	 54.59	+1	2486607..2487923	+	438	16331401	murZ	slr0017	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
2235	 50.11	0	2488028..2489428	+	466	16331402	fumC	slr0018	-	fumarate hydratase
2236	 45.67	0	2489484..2489864	-	126	16331403	-	sll0010	-	hypothetical protein
2237	 49.31	0	2490326..2493004	+	892	16331404	-	slr0019	-	hypothetical protein
2238	 37.25	-2	2493033..2493542	-	169	16331405	-	sll0008	-	hypothetical protein
2239	 47.22	0	2493578..2494153	-	191	16331406	-	sll0007	-	hypothetical protein
2240	 50.04	0	2494205..2495389	-	394	16331407	aspC	sll0006	-	aspartate aminotransferase
2241	 47.75	0	2495493..2497538	-	681	16331408	-	sll0005	-	ABC1-like
2242	 44.83	0	2497726..2500221	+	831	16331409	recG	slr0020	-	DNA recombinase
2243	 49.04	0	2500322..2501155	+	277	16331410	sppA	slr0021	-	protease IV
2244	 54.06	+1	2501221..2503878	-	885	16331411	ponA	sll0002	-	penicillin-binding protein 1A
2245	 51.81	0	2504415..2506043	+	542	16331412	guaA	slr0213	-	bifunctional GMP synthase/glutamine amidotransferase protein
2246	 43.37	0	2506131..2507405	+	424	16331413	-	slr0214	-	cytosine-specific methyltransferase
2247	 47.91	0	2507382..2508362	-	326	16331414	uppP	sll0210	-	undecaprenyl pyrophosphate phosphatase
48.22	MEAN

4.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.