IslandPathversion 1.0

IslandPath Analysis: Synechocystis sp. PCC 6803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.22 STD DEV: 4.98
Synechocystis sp. PCC 6803, complete genome - 1..3573470
3172 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2118	 50.63	0	2346573..2347127	+	184	16331285	-	slr0362	-	hypothetical protein
2119	 52.32	0	2347500..2349911	-	803	16331286	-	sll0350	-	hypothetical protein
2120	 41.88	-1	2350140..2350256	-	38	16331287	psbI	sml0001	-	photosystem II reaction center I protein I
2121	 54.25	+1	2350372..2350983	+	203	16331288	-	slr0363	-	hypothetical protein
2122	 49.71	0	2351323..2360412	+	3029	16331289	-	slr0364	-	hypothetical protein
2123	 51.48	0	2360457..2365685	+	1742	16331290	-	slr0366	-	hypothetical protein
2124	 49.91	0	2365930..2369181	+	1083	16331291	-	slr0369	-	cation or drug efflux system protein
2125	 52.38	0	2369282..2370646	+	454	16331292	gabD	slr0370	-	succinate-semialdehyde dehydrogenase (NADP+)
2126	 48.57	0	2370818..2372110	-	430	16331293	sphS	sll0337	-	regulation of the phosphate regulon
2127	 51.99	0	2372249..2373229	-	326	16331294	accD	sll0336	-	acetyl-CoA carboxylase subunit beta
2128	 52.63	0	2373343..2374788	-	481	16331295	-	sll0335	-	hypothetical protein
2129	 52.23	0	2375068..2375448	+	126	16331296	-	slr0373	-	hypothetical protein
2130	 54.78	+1	2375539..2377044	+	501	16331297	-	slr0374	-	cell division cycle protein
2131	 48.15	0	2377177..2377527	+	116	16331298	-	slr0376	-	hypothetical protein
2132	 49.27	0	2377709..2378938	+	409	16331299	-	slr0377	-	hypothetical protein
2133	 50.97	0	2378981..2381095	+	704	16331300	-	slr0378	-	7-beta-(4-carbaxybutanamido)cephalosporanic acid acylase
2134	 50.77	0	2381041..2381751	+	236	16331301	-	slr0379	-	hypothetical protein
2135	 49.71	0	2381748..2383127	+	459	16331302	-	slr0380	-	hypothetical protein
2136	 46.46	0	2383241..2383636	+	131	16331303	-	slr0381	-	hypothetical protein
2137	 53.72	+1	2383949..2384728	-	259	16331304	fabG	sll0330	-	3-ketoacyl-acyl carrier protein reductase
2138	 51.16	0	2385351..2385911	+	186	16331305	-	slr0383	-	hypothetical protein
2139	 51.22	0	2385939..2387168	+	409	16331306	-	slr0384	-	hypothetical protein
2140	 50.52	0	2387424..2388872	-	482	16331307	gnd	sll0329	-	6-phosphogluconate dehydrogenase
2141	 42.86	-1	2389062..2389481	-	139	16331308	-	sll0328	-	hypothetical protein
2142	 53.33	+1	2389481..2389900	-	139	16331309	-	sll0327	-	hypothetical protein
2143	 48.51	0	2390216..2391454	+	412	16331310	-	slr0386	-	hypothetical protein
2144	 51.77	0	2391547..2392707	+	386	16331311	nifS	slr0387	-	NifS protein
2145	 49.78	0	2392729..2393403	+	224	16331312	-	slr0388	-	hypothetical protein
2146	 51.38	0	2393493..2394107	+	204	16331313	-	slr0769	-	hypothetical protein
2147	 42.68	-1	2394232..2394552	+	106	16331314	-	slr0770	-	hypothetical protein
2148	 39.58	-1	2394536..2394871	+	111	16331315	-	slr0771	-	hypothetical protein
2149	 50.10	0	2395103..2396629	+	508	16331316	chlB	slr0772	-	light-independent protochlorophyllide reductase subunit B
2150	 50.07	0	2396761..2397441	+	226	16331317	-	slr0773	-	hypothetical protein
2151	 50.09	0	2397478..2399118	-	546	16331318	-	sll0772	-	hypothetical protein
2152	 51.17	0	2399210..2400616	-	468	16331319	glcP	sll0771	-	glucose transport protein
2153	 53.49	+1	2400914..2402332	+	472	16331320	secD	slr0774	-	preprotein translocase subunit SecD
2154	 47.78	0	2402393..2403340	+	315	16331321	secF	slr0775	-	preprotein translocase subunit SecF
2155	 53.91	+1	2403473..2404507	+	344	16331322	lpxD	slr0776	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
2156	 50.85	0	2404615..2404968	-	117	16331323	rplT	sll0767	-	50S ribosomal protein L20
2157	 45.10	0	2405109..2405312	-	67	16331324	rpmI	ssl1426	-	50S ribosomal protein L35
2158	 52.73	0	2405409..2406140	-	243	16331325	radC	sll0766	-	DNA repair protein RadC
2159	 49.82	0	2406130..2406966	-	278	16331326	-	sll0765	-	hypothetical protein
2160	 49.29	0	2407565..2408686	-	373	16331327	livG	sll0764	-	high-affinity branched-chain amino acid transport ATP-binding protein
2161	 50.83	0	2408869..2409228	-	119	16331328	-	sll0763	-	hypothetical protein
2162	 51.00	0	2409194..2409544	-	116	16331329	-	sll0762	-	hypothetical protein
2163	 53.33	+1	2409572..2409931	-	119	16331330	-	sll0761	-	hypothetical protein
2164	 48.70	0	2410030..2410914	-	294	16331331	ycf38	sll0760	-	Ycf38
2165	 50.00	0	2411067..2412110	-	347	16331332	-	sll0759	-	ABC transporter
2166	 50.08	0	2412178..2412798	+	206	16331333	-	slr0779	-	hypothetical protein
2167	 51.88	0	2412826..2414313	-	495	16331334	purF	sll0757	-	amidophosphoribosyltransferase
2168	 52.08	0	2414584..2414679	+	31	16331335	psbT	smr0001	-	photosystem II reaction center protein T
2169	 47.94	0	2414833..2415318	+	161	16331336	-	slr0780	-	transcriptional regulator NrdR
2170	 46.47	0	2415410..2416018	-	202	16331337	-	sll0756	-	hypothetical protein
2171	 50.41	0	2416091..2416693	-	200	16331338	-	sll0755	-	thiol-specific antioxidant protein
2172	 54.23	+1	2416806..2417207	-	133	16331339	rbfA	sll0754	-	ribosome-binding factor A
2173	 48.26	0	2417266..2417466	-	66	16331340	ycf33	ssl1417	-	ycf33 gene product
2174	 52.88	0	2417577..2418461	-	294	16331341	folD	sll0753	-	methylenetetrahydrofolate dehydrogenase /methenyltetrahydrofolate cyclohydrolase
2175	 48.38	0	2418535..2419398	-	287	16331342	-	sll0752	-	hypothetical protein
2176	 49.41	0	2419385..2419894	-	169	16331343	ycf22	sll0751	-	hypothetical protein
2177	 49.72	0	2420030..2421445	+	471	16331344	-	slr0782	-	amine oxidase
2178	 46.35	0	2421536..2422687	-	383	16331345	sarA	sll0750	-	adaptive-response sensory kinase
2179	 52.00	0	2422833..2423432	-	199	16331346	-	sll0749	-	hypothetical protein
2180	 50.89	0	2423621..2424349	+	242	16331347	tpiA	slr0783	-	triosephosphate isomerase
2181	 47.21	0	2424368..2425390	+	340	16331348	-	slr0784	-	hypothetical protein
2182	 52.35	0	2425387..2426343	+	318	16331349	-	slr0341	-	hypothetical protein
2183	 50.97	0	2426297..2427787	-	496	16331350	-	sll0325	-	hypothetical protein
2184	 51.72	0	2428010..2428678	+	222	16331351	petB	slr0342	-	cytochrome b6
2185	 49.69	0	2428809..2429291	+	160	16331352	petD	slr0343	-	cytochrome b6-f complex subunit IV
2186	 38.19	-2	2429543..2430964	+	473	16331353	rfbW	slr0344	-	mannosyl transferase
2187	 50.49	0	2431092..2431499	+	135	16331354	-	slr0345	-	hypothetical protein
2188	 48.84	0	2431704..2432438	+	244	16331355	rnc	slr0346	-	ribonuclease III
2189	 42.40	-1	2432459..2434762	-	767	16331356	hypF	sll0322	-	transcriptional regulatory protein; HypF
2190	 47.09	0	2434808..2436304	-	498	16331357	-	sll0321	-	hypothetical protein
2191	 44.27	0	2436443..2437228	+	261	16331358	-	slr0347	-	hypothetical protein
2192	 48.17	0	2437235..2437888	-	217	16331359	rnd	sll0320	-	ribonuclease D
2193	 53.69	+1	2437922..2438815	-	297	16331360	-	sll0319	-	hypothetical protein
2194	 47.91	0	2439092..2440312	+	406	16331361	-	slr0348	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
2195	 52.58	0	2440295..2440933	-	212	16331362	-	sll0318	-	hypothetical protein
2196	 45.93	0	2441098..2441883	+	261	16331363	-	slr0350	-	transposase
2197	 50.44	0	2442058..2443308	+	416	16331364	-	slr0351	-	hypothetical protein
2198	 30.83	-2	2443461..2443859	-	132	16331365	-	sll0317	-	transposase
2199	 36.63	-2	2443999..2444847	+	282	16331366	-	slr0352	-	transposase
2200	 35.53	-2	2444743..2445426	-	227	16331367	-	sll0315	-	transposase
2201	 39.34	-1	2445550..2445915	+	121	16331368	-	slr0353	-	hypothetical protein
2202	 46.56	0	2446395..2447339	-	314	16331369	-	sll0314	-	hypothetical protein
2203	 50.39	0	2447491..2448123	+	210	16331370	-	slr0354	-	ABC transporter
2204	 46.45	0	2448222..2448404	-	60	16331371	rps21	ssl0601	-	30S ribosomal protein S21
2205	 51.51	0	2454087..2455082	+	331	16331372	-	slr0355	-	hypothetical protein
2206	 50.08	0	2455121..2455711	+	196	16331373	-	slr0356	-	hypothetical protein
2207	 48.22	0	2455755..2456768	-	337	16331374	-	sll0312	-	OppB in a binding protein-dependent transport system
2208	 51.71	0	2456935..2458278	+	447	16331375	hisS	slr0357	-	histidyl-tRNA synthetase
2209	 48.80	0	2458253..2459377	+	374	16331376	-	slr0358	-	hypothetical protein
2210	 52.70	0	2459374..2460282	-	302	16331377	-	sll0310	-	hypothetical protein
2211	 49.36	0	2460360..2461058	-	232	16331378	-	sll0309	-	hypothetical protein
2212	 37.35	-2	2461358..2462179	-	273	16331379	-	sll0024	-	hypothetical protein
2213	 43.82	0	2462212..2463555	-	447	16331380	-	sll0023	-	hypothetical protein
2214	 52.00	0	2463555..2464304	-	249	16331381	-	sll0022	-	hypothetical protein
2215	 52.38	0	2464527..2465009	+	160	16331382	-	slr0001	-	hypothetical protein
2216	 49.88	0	2465076..2466326	-	416	16331383	-	sll0021	-	hypothetical protein
2217	 53.04	0	2466407..2468872	-	821	16331384	clpC	sll0020	-	ATP-dependent Clp protease regulatory subunit
48.22	MEAN

4.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.