IslandPathversion 1.0

IslandPath Analysis: Synechocystis sp. PCC 6803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.22 STD DEV: 4.98
Synechocystis sp. PCC 6803, complete genome - 1..3573470
3172 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2074	 42.34	-1	2290089..2290421	+	110	16331241	-	slr0334	-	hypothetical protein
2075	 47.06	0	2290705..2290959	+	84	16331242	-	ssr0536	-	hypothetical protein
2076	 46.59	0	2291091..2291897	-	268	16331243	-	sll0295	-	hypothetical protein
2077	 51.95	0	2292188..2294878	+	896	16331244	apcE	slr0335	-	phycobilisome LCM core-membrane linker polypeptide
2078	 50.68	0	2295152..2297341	+	729	16331245	-	slr0337	-	hypothetical protein
2079	 52.78	0	2297368..2298570	-	400	16331246	-	sll0294	-	hypothetical protein
2080	 49.51	0	2298606..2299118	-	170	16331247	-	sll0293	-	hypothetical protein
2081	 50.32	0	2299347..2300441	+	364	16331248	-	slr0338	-	hypothetical protein
2082	 49.84	0	2300515..2302446	+	643	16331249	-	slr0168	-	hypothetical protein
2083	 52.96	0	2302638..2303279	+	213	16331250	-	slr0169	-	hypothetical protein
2084	 39.02	-1	2303507..2304034	+	175	16331251	ycf37	slr0171	-	ycf37 gene product
2085	 51.71	0	2304094..2304561	+	155	16331252	guaB	slr0172	-	IMP dehydrogenase
2086	 52.60	0	2304558..2305886	-	442	16331253	-	sll0177	-	hypothetical protein
2087	 49.60	0	2305907..2306410	-	167	16331254	-	sll0176	-	hypothetical protein
2088	 44.28	0	2306600..2306800	-	66	16331255	-	ssl0312	-	hypothetical protein
2089	 47.44	0	2306850..2308472	-	540	16331256	-	sll0175	-	putative; ORF1
2090	 47.60	0	2308517..2309371	-	284	16331257	-	sll0174	-	hypothetical protein
2091	 47.69	0	2309413..2310471	-	352	16331258	-	sll0173	-	virginiamycin B hydrolase; Vgb
2092	 47.71	0	2310533..2310991	-	152	16331259	-	sll0172	-	hypothetical protein
2093	 46.65	0	2311377..2312495	-	372	16331260	gcvT	sll0171	-	glycine cleavage system aminomethyltransferase T
2094	 51.39	0	2312664..2314574	-	636	16331261	dnaK	sll0170	-	molecular chaperone DnaK
2095	 51.75	0	2314780..2316924	-	714	16331262	-	sll0169	-	hypothetical protein
2096	 51.49	0	2317112..2317447	-	111	16331263	-	sll0168	-	hypothetical protein
2097	 50.10	0	2317536..2318030	-	164	16331264	-	sll0167	-	hypothetical protein
2098	 52.63	0	2318011..2319627	-	538	16331265	hemD	sll0166	-	uroporphyrin-III synthase
2099	 52.74	0	2319555..2324636	-	1693	16331266	-	sll0163	-	beta transducin-like protein
2100	 50.26	0	2325045..2325629	-	194	16331267	-	sll0162	-	hypothetical protein
2101	 36.96	-2	2325864..2326937	+	357	16331268	-	slr0179	-	hypothetical protein
2102	 32.25	-2	2327013..2328029	+	338	16331269	-	slr0180	-	transposase
2103	 47.85	0	2328393..2328695	-	100	16331270	-	sll0161	-	transposase
2104	 46.27	0	2328616..2328870	-	84	16331271	-	ssl0296	-	transposase
2105	 49.51	0	2329304..2330119	+	271	161344755	recO	slr0181	-	DNA repair protein RecO
2106	 47.42	0	2330147..2330359	-	70	16331273	-	ssl0294	-	hypothetical protein
2107	 51.56	0	2330788..2331462	-	224	16331274	-	sll0160	-	hypothetical protein
2108	 48.38	0	2331505..2333817	-	770	16331275	glgB	sll0158	-	glycogen branching enzyme
2109	 51.36	0	2334042..2334812	-	256	16331276	-	sll0157	-	hypothetical protein
2110	 51.20	0	2334877..2335503	-	208	16331277	-	sll0156	-	hypothetical protein
2111	 46.38	0	2335706..2336326	+	206	16331278	-	slr0184	-	hypothetical protein
2112	 52.26	0	2336427..2337023	+	198	16331279	pyrE	slr0185	-	orotate phosphoribosyltransferase
2113	 51.69	0	2337062..2338450	-	462	16331280	-	sll0154	-	hypothetical protein
2114	 51.81	0	2338636..2340237	+	533	16331281	leuA	slr0186	-	2-isopropylmalate synthase
2115	 49.18	0	2340322..2344056	+	1244	16331282	-	slr0359	-	hypothetical protein
2116	 52.05	0	2344152..2345759	+	535	16331283	-	slr0360	-	hypothetical protein
2117	 50.80	0	2345797..2346546	+	249	16331284	-	slr0361	-	hypothetical protein
2118	 50.63	0	2346573..2347127	+	184	16331285	-	slr0362	-	hypothetical protein
2119	 52.32	0	2347500..2349911	-	803	16331286	-	sll0350	-	hypothetical protein
2120	 41.88	-1	2350140..2350256	-	38	16331287	psbI	sml0001	-	photosystem II reaction center I protein I
2121	 54.25	+1	2350372..2350983	+	203	16331288	-	slr0363	-	hypothetical protein
2122	 49.71	0	2351323..2360412	+	3029	16331289	-	slr0364	-	hypothetical protein
2123	 51.48	0	2360457..2365685	+	1742	16331290	-	slr0366	-	hypothetical protein
2124	 49.91	0	2365930..2369181	+	1083	16331291	-	slr0369	-	cation or drug efflux system protein
2125	 52.38	0	2369282..2370646	+	454	16331292	gabD	slr0370	-	succinate-semialdehyde dehydrogenase (NADP+)
2126	 48.57	0	2370818..2372110	-	430	16331293	sphS	sll0337	-	regulation of the phosphate regulon
2127	 51.99	0	2372249..2373229	-	326	16331294	accD	sll0336	-	acetyl-CoA carboxylase subunit beta
2128	 52.63	0	2373343..2374788	-	481	16331295	-	sll0335	-	hypothetical protein
2129	 52.23	0	2375068..2375448	+	126	16331296	-	slr0373	-	hypothetical protein
2130	 54.78	+1	2375539..2377044	+	501	16331297	-	slr0374	-	cell division cycle protein
2131	 48.15	0	2377177..2377527	+	116	16331298	-	slr0376	-	hypothetical protein
2132	 49.27	0	2377709..2378938	+	409	16331299	-	slr0377	-	hypothetical protein
2133	 50.97	0	2378981..2381095	+	704	16331300	-	slr0378	-	7-beta-(4-carbaxybutanamido)cephalosporanic acid acylase
2134	 50.77	0	2381041..2381751	+	236	16331301	-	slr0379	-	hypothetical protein
2135	 49.71	0	2381748..2383127	+	459	16331302	-	slr0380	-	hypothetical protein
2136	 46.46	0	2383241..2383636	+	131	16331303	-	slr0381	-	hypothetical protein
2137	 53.72	+1	2383949..2384728	-	259	16331304	fabG	sll0330	-	3-ketoacyl-acyl carrier protein reductase
2138	 51.16	0	2385351..2385911	+	186	16331305	-	slr0383	-	hypothetical protein
2139	 51.22	0	2385939..2387168	+	409	16331306	-	slr0384	-	hypothetical protein
2140	 50.52	0	2387424..2388872	-	482	16331307	gnd	sll0329	-	6-phosphogluconate dehydrogenase
2141	 42.86	-1	2389062..2389481	-	139	16331308	-	sll0328	-	hypothetical protein
2142	 53.33	+1	2389481..2389900	-	139	16331309	-	sll0327	-	hypothetical protein
2143	 48.51	0	2390216..2391454	+	412	16331310	-	slr0386	-	hypothetical protein
2144	 51.77	0	2391547..2392707	+	386	16331311	nifS	slr0387	-	NifS protein
2145	 49.78	0	2392729..2393403	+	224	16331312	-	slr0388	-	hypothetical protein
2146	 51.38	0	2393493..2394107	+	204	16331313	-	slr0769	-	hypothetical protein
2147	 42.68	-1	2394232..2394552	+	106	16331314	-	slr0770	-	hypothetical protein
2148	 39.58	-1	2394536..2394871	+	111	16331315	-	slr0771	-	hypothetical protein
2149	 50.10	0	2395103..2396629	+	508	16331316	chlB	slr0772	-	light-independent protochlorophyllide reductase subunit B
2150	 50.07	0	2396761..2397441	+	226	16331317	-	slr0773	-	hypothetical protein
2151	 50.09	0	2397478..2399118	-	546	16331318	-	sll0772	-	hypothetical protein
2152	 51.17	0	2399210..2400616	-	468	16331319	glcP	sll0771	-	glucose transport protein
2153	 53.49	+1	2400914..2402332	+	472	16331320	secD	slr0774	-	preprotein translocase subunit SecD
2154	 47.78	0	2402393..2403340	+	315	16331321	secF	slr0775	-	preprotein translocase subunit SecF
2155	 53.91	+1	2403473..2404507	+	344	16331322	lpxD	slr0776	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
2156	 50.85	0	2404615..2404968	-	117	16331323	rplT	sll0767	-	50S ribosomal protein L20
2157	 45.10	0	2405109..2405312	-	67	16331324	rpmI	ssl1426	-	50S ribosomal protein L35
2158	 52.73	0	2405409..2406140	-	243	16331325	radC	sll0766	-	DNA repair protein RadC
2159	 49.82	0	2406130..2406966	-	278	16331326	-	sll0765	-	hypothetical protein
2160	 49.29	0	2407565..2408686	-	373	16331327	livG	sll0764	-	high-affinity branched-chain amino acid transport ATP-binding protein
2161	 50.83	0	2408869..2409228	-	119	16331328	-	sll0763	-	hypothetical protein
2162	 51.00	0	2409194..2409544	-	116	16331329	-	sll0762	-	hypothetical protein
2163	 53.33	+1	2409572..2409931	-	119	16331330	-	sll0761	-	hypothetical protein
2164	 48.70	0	2410030..2410914	-	294	16331331	ycf38	sll0760	-	Ycf38
2165	 50.00	0	2411067..2412110	-	347	16331332	-	sll0759	-	ABC transporter
2166	 50.08	0	2412178..2412798	+	206	16331333	-	slr0779	-	hypothetical protein
2167	 51.88	0	2412826..2414313	-	495	16331334	purF	sll0757	-	amidophosphoribosyltransferase
2168	 52.08	0	2414584..2414679	+	31	16331335	psbT	smr0001	-	photosystem II reaction center protein T
2169	 47.94	0	2414833..2415318	+	161	16331336	-	slr0780	-	transcriptional regulator NrdR
2170	 46.47	0	2415410..2416018	-	202	16331337	-	sll0756	-	hypothetical protein
2171	 50.41	0	2416091..2416693	-	200	16331338	-	sll0755	-	thiol-specific antioxidant protein
2172	 54.23	+1	2416806..2417207	-	133	16331339	rbfA	sll0754	-	ribosome-binding factor A
2173	 48.26	0	2417266..2417466	-	66	16331340	ycf33	ssl1417	-	ycf33 gene product
48.22	MEAN

4.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.