IslandPathversion 1.0

IslandPath Analysis: Synechocystis sp. PCC 6803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.22 STD DEV: 4.98
Synechocystis sp. PCC 6803, complete genome - 1..3573470
3172 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2035	 52.54	0	2245407..2245583	+	58	16331202	-	ssr3304	-	hypothetical protein
2036	 48.39	0	2245636..2246631	+	331	16331203	dpm1	slr1943	-	dolichol phosphate mannose synthase
2037	 45.83	0	2246867..2248483	+	538	16331204	-	slr1944	-	hypothetical protein
2038	 53.10	0	2248578..2250176	+	532	16331205	yibO	slr1945	-	phosphoglyceromutase
2039	 47.86	0	2250241..2250474	+	77	16331206	secG	ssr3307	-	preprotein translocase subunit SecG
2040	 51.91	0	2250711..2251496	+	261	16331207	-	slr1946	-	hypothetical protein
2041	 52.61	0	2251657..2252958	-	433	16331208	odhB	sll1841	-	branched-chain alpha-keto acid dehydrogenase subunit E2
2042	 50.86	0	2253169..2253807	+	212	16331209	-	slr1949	-	hypothetical protein
2043	 53.35	+1	2254112..2256454	+	780	16331210	-	slr1950	-	cation-transporting ATPase; E1-E2 ATPase
2044	 48.95	0	2256697..2257170	+	157	16331211	-	slr1951	-	hypothetical protein
2045	 53.28	+1	2257203..2257964	+	253	16331212	-	slr0989	-	hypothetical protein
2046	 52.56	0	2258074..2259243	+	389	16331213	-	slr0990	-	hypothetical protein
2047	 49.78	0	2259402..2259863	+	153	16331214	-	slr0992	-	hypothetical protein
2048	 55.54	+1	2260429..2262576	+	715	16331215	nlpD	slr0993	-	lipoprotein; NlpD
2049	 45.49	0	2262805..2263380	-	191	16331216	lrtA	sll0947	-	light repressed protein
2050	 52.49	0	2263827..2264510	+	227	16331217	lipB	slr0994	-	lipoyltransferase
2051	 48.80	0	2264491..2264781	-	96	16331218	-	ssl1807	-	hypothetical protein
2052	 51.19	0	2265213..2266646	-	477	16331219	glgA	sll0945	-	glycogen synthase
2053	 45.05	0	2266850..2267344	-	164	16331220	-	sll0944	-	hypothetical protein
2054	 48.81	0	2267490..2269085	+	531	16331221	-	slr0320	-	hypothetical protein
2055	 52.12	0	2269126..2270163	-	345	16331222	rpoD	sll0306	-	RNA polymerase sigma factor
2056	 50.00	0	2270624..2271571	+	315	16331223	era	slr0321	-	GTP-binding protein Era
2057	 51.73	0	2271581..2274868	+	1095	16331224	-	slr0322	-	CheA like protein
2058	 39.98	-1	2274868..2277996	+	1042	16331225	ams1	slr0323	-	alpha-mannosidase
2059	 45.65	0	2277989..2278873	+	294	16331226	-	slr0324	-	OppC in a binding protein-dependent transport system
2060	 43.00	-1	2278921..2279406	+	161	16331227	-	slr0325	-	hypothetical protein
2061	 53.14	0	2279497..2280006	-	169	16331228	-	sll0301	-	hypothetical protein
2062	 52.86	0	2280267..2280947	-	226	16331229	ribC	sll0300	-	riboflavin synthase subunit alpha
2063	 45.72	0	2280998..2281441	+	147	16331230	-	slr0326	-	hypothetical protein
2064	 51.31	0	2281509..2283182	+	557	16331231	hitB	slr0327	-	iron utilization protein
2065	 45.78	0	2283232..2283705	+	157	16331232	-	slr0328	-	low molecular weight phosphotyrosine protein phosphatase
2066	 53.86	+1	2283794..2284777	+	327	16331233	xylR	slr0329	-	xylose repressor
2067	 52.29	0	2284791..2285423	-	210	16331234	-	sll0298	-	hypothetical protein
2068	 52.55	0	2285410..2285997	-	195	16331235	-	sll0297	-	hypothetical protein
2069	 46.52	0	2286186..2286746	-	186	16331236	-	sll0296	-	hypothetical protein
2070	 49.26	0	2286798..2287067	-	89	16331237	-	ssl0564	-	response regulator like protein
2071	 49.59	0	2287334..2287579	-	81	16331238	psaC	ssl0563	-	photosystem I subunit VII
2072	 50.06	0	2287948..2289525	+	525	16331239	ndhD	slr0331	-	NAD(P)H-quinone oxidoreductase subunit 4
2073	 45.17	0	2289704..2290024	+	106	16331240	-	slr0333	-	hypothetical protein
2074	 42.34	-1	2290089..2290421	+	110	16331241	-	slr0334	-	hypothetical protein
2075	 47.06	0	2290705..2290959	+	84	16331242	-	ssr0536	-	hypothetical protein
2076	 46.59	0	2291091..2291897	-	268	16331243	-	sll0295	-	hypothetical protein
2077	 51.95	0	2292188..2294878	+	896	16331244	apcE	slr0335	-	phycobilisome LCM core-membrane linker polypeptide
2078	 50.68	0	2295152..2297341	+	729	16331245	-	slr0337	-	hypothetical protein
2079	 52.78	0	2297368..2298570	-	400	16331246	-	sll0294	-	hypothetical protein
2080	 49.51	0	2298606..2299118	-	170	16331247	-	sll0293	-	hypothetical protein
2081	 50.32	0	2299347..2300441	+	364	16331248	-	slr0338	-	hypothetical protein
2082	 49.84	0	2300515..2302446	+	643	16331249	-	slr0168	-	hypothetical protein
2083	 52.96	0	2302638..2303279	+	213	16331250	-	slr0169	-	hypothetical protein
2084	 39.02	-1	2303507..2304034	+	175	16331251	ycf37	slr0171	-	ycf37 gene product
2085	 51.71	0	2304094..2304561	+	155	16331252	guaB	slr0172	-	IMP dehydrogenase
2086	 52.60	0	2304558..2305886	-	442	16331253	-	sll0177	-	hypothetical protein
2087	 49.60	0	2305907..2306410	-	167	16331254	-	sll0176	-	hypothetical protein
2088	 44.28	0	2306600..2306800	-	66	16331255	-	ssl0312	-	hypothetical protein
2089	 47.44	0	2306850..2308472	-	540	16331256	-	sll0175	-	putative; ORF1
2090	 47.60	0	2308517..2309371	-	284	16331257	-	sll0174	-	hypothetical protein
2091	 47.69	0	2309413..2310471	-	352	16331258	-	sll0173	-	virginiamycin B hydrolase; Vgb
2092	 47.71	0	2310533..2310991	-	152	16331259	-	sll0172	-	hypothetical protein
2093	 46.65	0	2311377..2312495	-	372	16331260	gcvT	sll0171	-	glycine cleavage system aminomethyltransferase T
2094	 51.39	0	2312664..2314574	-	636	16331261	dnaK	sll0170	-	molecular chaperone DnaK
2095	 51.75	0	2314780..2316924	-	714	16331262	-	sll0169	-	hypothetical protein
2096	 51.49	0	2317112..2317447	-	111	16331263	-	sll0168	-	hypothetical protein
2097	 50.10	0	2317536..2318030	-	164	16331264	-	sll0167	-	hypothetical protein
2098	 52.63	0	2318011..2319627	-	538	16331265	hemD	sll0166	-	uroporphyrin-III synthase
2099	 52.74	0	2319555..2324636	-	1693	16331266	-	sll0163	-	beta transducin-like protein
2100	 50.26	0	2325045..2325629	-	194	16331267	-	sll0162	-	hypothetical protein
2101	 36.96	-2	2325864..2326937	+	357	16331268	-	slr0179	-	hypothetical protein
2102	 32.25	-2	2327013..2328029	+	338	16331269	-	slr0180	-	transposase
2103	 47.85	0	2328393..2328695	-	100	16331270	-	sll0161	-	transposase
2104	 46.27	0	2328616..2328870	-	84	16331271	-	ssl0296	-	transposase
2105	 49.51	0	2329304..2330119	+	271	161344755	recO	slr0181	-	DNA repair protein RecO
2106	 47.42	0	2330147..2330359	-	70	16331273	-	ssl0294	-	hypothetical protein
2107	 51.56	0	2330788..2331462	-	224	16331274	-	sll0160	-	hypothetical protein
2108	 48.38	0	2331505..2333817	-	770	16331275	glgB	sll0158	-	glycogen branching enzyme
2109	 51.36	0	2334042..2334812	-	256	16331276	-	sll0157	-	hypothetical protein
2110	 51.20	0	2334877..2335503	-	208	16331277	-	sll0156	-	hypothetical protein
2111	 46.38	0	2335706..2336326	+	206	16331278	-	slr0184	-	hypothetical protein
2112	 52.26	0	2336427..2337023	+	198	16331279	pyrE	slr0185	-	orotate phosphoribosyltransferase
2113	 51.69	0	2337062..2338450	-	462	16331280	-	sll0154	-	hypothetical protein
2114	 51.81	0	2338636..2340237	+	533	16331281	leuA	slr0186	-	2-isopropylmalate synthase
2115	 49.18	0	2340322..2344056	+	1244	16331282	-	slr0359	-	hypothetical protein
2116	 52.05	0	2344152..2345759	+	535	16331283	-	slr0360	-	hypothetical protein
2117	 50.80	0	2345797..2346546	+	249	16331284	-	slr0361	-	hypothetical protein
2118	 50.63	0	2346573..2347127	+	184	16331285	-	slr0362	-	hypothetical protein
2119	 52.32	0	2347500..2349911	-	803	16331286	-	sll0350	-	hypothetical protein
2120	 41.88	-1	2350140..2350256	-	38	16331287	psbI	sml0001	-	photosystem II reaction center I protein I
2121	 54.25	+1	2350372..2350983	+	203	16331288	-	slr0363	-	hypothetical protein
2122	 49.71	0	2351323..2360412	+	3029	16331289	-	slr0364	-	hypothetical protein
2123	 51.48	0	2360457..2365685	+	1742	16331290	-	slr0366	-	hypothetical protein
2124	 49.91	0	2365930..2369181	+	1083	16331291	-	slr0369	-	cation or drug efflux system protein
2125	 52.38	0	2369282..2370646	+	454	16331292	gabD	slr0370	-	succinate-semialdehyde dehydrogenase (NADP+)
2126	 48.57	0	2370818..2372110	-	430	16331293	sphS	sll0337	-	regulation of the phosphate regulon
2127	 51.99	0	2372249..2373229	-	326	16331294	accD	sll0336	-	acetyl-CoA carboxylase subunit beta
2128	 52.63	0	2373343..2374788	-	481	16331295	-	sll0335	-	hypothetical protein
2129	 52.23	0	2375068..2375448	+	126	16331296	-	slr0373	-	hypothetical protein
2130	 54.78	+1	2375539..2377044	+	501	16331297	-	slr0374	-	cell division cycle protein
2131	 48.15	0	2377177..2377527	+	116	16331298	-	slr0376	-	hypothetical protein
2132	 49.27	0	2377709..2378938	+	409	16331299	-	slr0377	-	hypothetical protein
2133	 50.97	0	2378981..2381095	+	704	16331300	-	slr0378	-	7-beta-(4-carbaxybutanamido)cephalosporanic acid acylase
2134	 50.77	0	2381041..2381751	+	236	16331301	-	slr0379	-	hypothetical protein
48.22	MEAN

4.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.