IslandPathversion 1.0

IslandPath Analysis: Synechocystis sp. PCC 6803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.22 STD DEV: 4.98
Synechocystis sp. PCC 6803, complete genome - 1..3573470
3172 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2012	 48.42	0	2223873..2224568	+	231	16331179	-	slr1932	-	hypothetical protein
2013	 45.37	0	2224789..2225112	-	107	16331180	-	sll1863	-	hypothetical protein
2014	 45.83	0	2225278..2225709	-	143	16331181	-	sll1862	-	hypothetical protein
2015	 43.40	0	2225766..2226530	-	254	16331182	-	sll1861	-	transposase
2016	 45.80	0	2226619..2227404	-	261	16331183	-	sll1860	-	transposase
2017	 50.46	0	2227829..2228377	+	182	16331184	rfbC	slr1933	-	dTDP-4-dehydrorhamnose 3,5-epimerase
2018	 51.01	0	2228445..2230328	-	627	16331185	-	sll1858	-	hypothetical protein
2019	 51.51	0	2230487..2231515	+	342	16331186	-	slr1934	-	pyruvate dehydrogenase E1 component, alpha subunit
2020	 50.64	0	2231639..2233036	+	465	16331187	-	slr1935	-	hypothetical protein
2021	 49.03	0	2233037..2233864	-	275	16331188	xthA	sll1854	-	exodeoxyribonuclease III
2022	 52.47	0	2233809..2234273	-	154	16331189	-	sll1853	-	hypothetical protein
2023	 48.00	0	2234304..2234753	-	149	16331190	ndkR	sll1852	-	nucleoside diphosphate kinase
2024	 40.57	-1	2235072..2235458	-	128	16331191	-	sll1851	-	hypothetical protein
2025	 36.39	-2	2235561..2235920	+	119	16331192	-	slr1936	-	transposase
2026	 36.77	-2	2235914..2236408	+	164	16331193	-	slr1937	-	transposase
2027	 44.65	0	2236419..2237054	-	211	16331194	-	sll1849	-	hypothetical protein
2028	 51.99	0	2237134..2238189	+	351	16331195	mtnA	slr1938	-	methylthioribose-1-phosphate isomerase
2029	 55.60	+1	2238277..2238954	-	225	16331196	-	sll1848	-	hypothetical protein
2030	 50.75	0	2239239..2241248	+	669	16331197	-	slr1939	-	hypothetical protein
2031	 50.45	0	2241340..2242788	+	482	16331198	-	slr1940	-	hypothetical protein
2032	 46.03	0	2242886..2243137	+	83	16331199	-	ssr3300	-	hypothetical protein
2033	 51.88	0	2243250..2243729	-	159	16331200	-	sll1845	-	hypothetical protein
2034	 48.88	0	2243851..2245368	+	505	16331201	-	slr1942	-	circadian clock protein KaiC
2035	 52.54	0	2245407..2245583	+	58	16331202	-	ssr3304	-	hypothetical protein
2036	 48.39	0	2245636..2246631	+	331	16331203	dpm1	slr1943	-	dolichol phosphate mannose synthase
2037	 45.83	0	2246867..2248483	+	538	16331204	-	slr1944	-	hypothetical protein
2038	 53.10	0	2248578..2250176	+	532	16331205	yibO	slr1945	-	phosphoglyceromutase
2039	 47.86	0	2250241..2250474	+	77	16331206	secG	ssr3307	-	preprotein translocase subunit SecG
2040	 51.91	0	2250711..2251496	+	261	16331207	-	slr1946	-	hypothetical protein
2041	 52.61	0	2251657..2252958	-	433	16331208	odhB	sll1841	-	branched-chain alpha-keto acid dehydrogenase subunit E2
2042	 50.86	0	2253169..2253807	+	212	16331209	-	slr1949	-	hypothetical protein
2043	 53.35	+1	2254112..2256454	+	780	16331210	-	slr1950	-	cation-transporting ATPase; E1-E2 ATPase
2044	 48.95	0	2256697..2257170	+	157	16331211	-	slr1951	-	hypothetical protein
2045	 53.28	+1	2257203..2257964	+	253	16331212	-	slr0989	-	hypothetical protein
2046	 52.56	0	2258074..2259243	+	389	16331213	-	slr0990	-	hypothetical protein
2047	 49.78	0	2259402..2259863	+	153	16331214	-	slr0992	-	hypothetical protein
2048	 55.54	+1	2260429..2262576	+	715	16331215	nlpD	slr0993	-	lipoprotein; NlpD
2049	 45.49	0	2262805..2263380	-	191	16331216	lrtA	sll0947	-	light repressed protein
2050	 52.49	0	2263827..2264510	+	227	16331217	lipB	slr0994	-	lipoyltransferase
2051	 48.80	0	2264491..2264781	-	96	16331218	-	ssl1807	-	hypothetical protein
2052	 51.19	0	2265213..2266646	-	477	16331219	glgA	sll0945	-	glycogen synthase
2053	 45.05	0	2266850..2267344	-	164	16331220	-	sll0944	-	hypothetical protein
2054	 48.81	0	2267490..2269085	+	531	16331221	-	slr0320	-	hypothetical protein
2055	 52.12	0	2269126..2270163	-	345	16331222	rpoD	sll0306	-	RNA polymerase sigma factor
2056	 50.00	0	2270624..2271571	+	315	16331223	era	slr0321	-	GTP-binding protein Era
2057	 51.73	0	2271581..2274868	+	1095	16331224	-	slr0322	-	CheA like protein
2058	 39.98	-1	2274868..2277996	+	1042	16331225	ams1	slr0323	-	alpha-mannosidase
2059	 45.65	0	2277989..2278873	+	294	16331226	-	slr0324	-	OppC in a binding protein-dependent transport system
2060	 43.00	-1	2278921..2279406	+	161	16331227	-	slr0325	-	hypothetical protein
2061	 53.14	0	2279497..2280006	-	169	16331228	-	sll0301	-	hypothetical protein
2062	 52.86	0	2280267..2280947	-	226	16331229	ribC	sll0300	-	riboflavin synthase subunit alpha
2063	 45.72	0	2280998..2281441	+	147	16331230	-	slr0326	-	hypothetical protein
2064	 51.31	0	2281509..2283182	+	557	16331231	hitB	slr0327	-	iron utilization protein
2065	 45.78	0	2283232..2283705	+	157	16331232	-	slr0328	-	low molecular weight phosphotyrosine protein phosphatase
2066	 53.86	+1	2283794..2284777	+	327	16331233	xylR	slr0329	-	xylose repressor
2067	 52.29	0	2284791..2285423	-	210	16331234	-	sll0298	-	hypothetical protein
2068	 52.55	0	2285410..2285997	-	195	16331235	-	sll0297	-	hypothetical protein
2069	 46.52	0	2286186..2286746	-	186	16331236	-	sll0296	-	hypothetical protein
2070	 49.26	0	2286798..2287067	-	89	16331237	-	ssl0564	-	response regulator like protein
2071	 49.59	0	2287334..2287579	-	81	16331238	psaC	ssl0563	-	photosystem I subunit VII
2072	 50.06	0	2287948..2289525	+	525	16331239	ndhD	slr0331	-	NAD(P)H-quinone oxidoreductase subunit 4
2073	 45.17	0	2289704..2290024	+	106	16331240	-	slr0333	-	hypothetical protein
2074	 42.34	-1	2290089..2290421	+	110	16331241	-	slr0334	-	hypothetical protein
2075	 47.06	0	2290705..2290959	+	84	16331242	-	ssr0536	-	hypothetical protein
2076	 46.59	0	2291091..2291897	-	268	16331243	-	sll0295	-	hypothetical protein
2077	 51.95	0	2292188..2294878	+	896	16331244	apcE	slr0335	-	phycobilisome LCM core-membrane linker polypeptide
2078	 50.68	0	2295152..2297341	+	729	16331245	-	slr0337	-	hypothetical protein
2079	 52.78	0	2297368..2298570	-	400	16331246	-	sll0294	-	hypothetical protein
2080	 49.51	0	2298606..2299118	-	170	16331247	-	sll0293	-	hypothetical protein
2081	 50.32	0	2299347..2300441	+	364	16331248	-	slr0338	-	hypothetical protein
2082	 49.84	0	2300515..2302446	+	643	16331249	-	slr0168	-	hypothetical protein
2083	 52.96	0	2302638..2303279	+	213	16331250	-	slr0169	-	hypothetical protein
2084	 39.02	-1	2303507..2304034	+	175	16331251	ycf37	slr0171	-	ycf37 gene product
2085	 51.71	0	2304094..2304561	+	155	16331252	guaB	slr0172	-	IMP dehydrogenase
2086	 52.60	0	2304558..2305886	-	442	16331253	-	sll0177	-	hypothetical protein
2087	 49.60	0	2305907..2306410	-	167	16331254	-	sll0176	-	hypothetical protein
2088	 44.28	0	2306600..2306800	-	66	16331255	-	ssl0312	-	hypothetical protein
2089	 47.44	0	2306850..2308472	-	540	16331256	-	sll0175	-	putative; ORF1
2090	 47.60	0	2308517..2309371	-	284	16331257	-	sll0174	-	hypothetical protein
2091	 47.69	0	2309413..2310471	-	352	16331258	-	sll0173	-	virginiamycin B hydrolase; Vgb
2092	 47.71	0	2310533..2310991	-	152	16331259	-	sll0172	-	hypothetical protein
2093	 46.65	0	2311377..2312495	-	372	16331260	gcvT	sll0171	-	glycine cleavage system aminomethyltransferase T
2094	 51.39	0	2312664..2314574	-	636	16331261	dnaK	sll0170	-	molecular chaperone DnaK
2095	 51.75	0	2314780..2316924	-	714	16331262	-	sll0169	-	hypothetical protein
2096	 51.49	0	2317112..2317447	-	111	16331263	-	sll0168	-	hypothetical protein
2097	 50.10	0	2317536..2318030	-	164	16331264	-	sll0167	-	hypothetical protein
2098	 52.63	0	2318011..2319627	-	538	16331265	hemD	sll0166	-	uroporphyrin-III synthase
2099	 52.74	0	2319555..2324636	-	1693	16331266	-	sll0163	-	beta transducin-like protein
2100	 50.26	0	2325045..2325629	-	194	16331267	-	sll0162	-	hypothetical protein
2101	 36.96	-2	2325864..2326937	+	357	16331268	-	slr0179	-	hypothetical protein
2102	 32.25	-2	2327013..2328029	+	338	16331269	-	slr0180	-	transposase
2103	 47.85	0	2328393..2328695	-	100	16331270	-	sll0161	-	transposase
2104	 46.27	0	2328616..2328870	-	84	16331271	-	ssl0296	-	transposase
2105	 49.51	0	2329304..2330119	+	271	161344755	recO	slr0181	-	DNA repair protein RecO
2106	 47.42	0	2330147..2330359	-	70	16331273	-	ssl0294	-	hypothetical protein
2107	 51.56	0	2330788..2331462	-	224	16331274	-	sll0160	-	hypothetical protein
2108	 48.38	0	2331505..2333817	-	770	16331275	glgB	sll0158	-	glycogen branching enzyme
2109	 51.36	0	2334042..2334812	-	256	16331276	-	sll0157	-	hypothetical protein
2110	 51.20	0	2334877..2335503	-	208	16331277	-	sll0156	-	hypothetical protein
2111	 46.38	0	2335706..2336326	+	206	16331278	-	slr0184	-	hypothetical protein
48.22	MEAN

4.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.