IslandPathversion 1.0

IslandPath Analysis: Synechocystis sp. PCC 6803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.22 STD DEV: 4.98
Synechocystis sp. PCC 6803, complete genome - 1..3573470
3172 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1976	 47.56	0	2180073..2180543	+	156	16331143	-	slr0149	-	hypothetical protein
1977	 51.92	0	2180577..2180888	+	103	16331144	petF	slr0150	-	ferredoxin
1978	 53.06	0	2181013..2181975	+	320	16331145	-	slr0151	-	hypothetical protein
1979	 49.26	0	2182063..2183958	+	631	16331146	-	slr0152	-	serine/threonine protein kinase
1980	 51.79	0	2184030..2185784	-	584	16331147	-	sll0149	-	hypothetical protein
1981	 53.89	+1	2185870..2188077	-	735	16331148	-	sll0148	-	hypothetical protein
1982	 46.59	0	2188230..2190236	-	668	16331149	-	sll0147	-	hypothetical protein
1983	 46.47	0	2190933..2192051	-	372	16331150	-	sll0146	-	high-affinity branched-chain amino acid transport protein; BraE
1984	 48.82	0	2192133..2192681	-	182	16331151	frr	sll0145	-	ribosome recycling factor
1985	 54.08	+1	2192668..2193390	-	240	161344756	pyrH	sll0144	-	uridylate kinase
1986	 41.44	-1	2193591..2193812	-	73	16331153	-	ssl0259	-	hypothetical protein
1987	 47.83	0	2194405..2197101	+	898	16331154	clpB	slr0156	-	ClpB protein
1988	 37.63	-2	2197132..2197620	+	162	16331155	-	slr0157	-	hypothetical protein
1989	 51.86	0	2197732..2200959	-	1075	16331156	-	sll0142	-	cation or drug efflux system protein
1990	 53.13	0	2201147..2202550	-	467	16331157	-	sll0141	-	hypothetical protein
1991	 50.63	0	2202944..2204053	+	369	16331158	pilT	slr0161	-	twitching motility protein
1992	 49.20	0	2204157..2204654	+	165	16331159	gspF	slr0162	-	general secretion pathway protein F
1993	 46.60	0	2204476..2205372	+	298	16331160	pilC	slr0163	-	pilin biogenesis protein
1994	 50.44	0	2205774..2206451	+	225	16331161	clpP	slr0164	-	ATP-dependent Clp protease-like protein
1995	 48.93	0	2206551..2207159	+	202	16331162	clpP	slr0165	-	ATP-dependent Clp protease proteolytic subunit
1996	 51.21	0	2207370..2208695	-	441	16331163	pepP	sll0136	-	aminopeptidase P
1997	 51.27	0	2208778..2209758	-	326	16331164	-	sll0135	-	5'-methylthioadenosine phosphorylase
1998	 48.10	0	2209703..2209939	-	78	16331165	-	ssl0242	-	hypothetical protein
1999	 46.67	0	2210451..2210705	+	84	16331166	-	ssr0256	-	transposase
2000	 47.52	0	2210626..2210928	+	100	16331167	-	slr0166	-	transposase
2001	 47.95	0	2211283..2212479	+	398	16331168	-	slr1923	-	hypothetical protein
2002	 43.23	-1	2212505..2213707	+	400	16331169	-	slr1924	-	D-alanyl-D-alanine carboxypeptidase
2003	 43.93	0	2213707..2214735	+	342	16331170	cobD	slr1925	-	cobalamin biosynthesis protein
2004	 50.75	0	2214685..2215551	-	288	16331171	prfB	sll1865	-	peptide chain release factor 2
2005	 52.78	0	2216476..2219175	-	899	16331172	-	sll1864	-	chloride channel protein
2006	 48.36	0	2219122..2219793	+	223	16331173	-	slr1926	-	hypothetical protein
2007	 51.76	0	2219741..2220961	+	406	16331174	-	slr1927	-	hypothetical protein
2008	 47.18	0	2221047..2221631	+	194	16331175	-	slr1928	-	hypothetical protein
2009	 43.48	0	2221648..2222199	+	183	16331176	-	slr1929	-	hypothetical protein
2010	 42.60	-1	2222316..2222876	+	186	16331177	-	slr1930	-	hypothetical protein
2011	 43.25	0	2222898..2223815	+	305	16331178	-	slr1931	-	hypothetical protein
2012	 48.42	0	2223873..2224568	+	231	16331179	-	slr1932	-	hypothetical protein
2013	 45.37	0	2224789..2225112	-	107	16331180	-	sll1863	-	hypothetical protein
2014	 45.83	0	2225278..2225709	-	143	16331181	-	sll1862	-	hypothetical protein
2015	 43.40	0	2225766..2226530	-	254	16331182	-	sll1861	-	transposase
2016	 45.80	0	2226619..2227404	-	261	16331183	-	sll1860	-	transposase
2017	 50.46	0	2227829..2228377	+	182	16331184	rfbC	slr1933	-	dTDP-4-dehydrorhamnose 3,5-epimerase
2018	 51.01	0	2228445..2230328	-	627	16331185	-	sll1858	-	hypothetical protein
2019	 51.51	0	2230487..2231515	+	342	16331186	-	slr1934	-	pyruvate dehydrogenase E1 component, alpha subunit
2020	 50.64	0	2231639..2233036	+	465	16331187	-	slr1935	-	hypothetical protein
2021	 49.03	0	2233037..2233864	-	275	16331188	xthA	sll1854	-	exodeoxyribonuclease III
2022	 52.47	0	2233809..2234273	-	154	16331189	-	sll1853	-	hypothetical protein
2023	 48.00	0	2234304..2234753	-	149	16331190	ndkR	sll1852	-	nucleoside diphosphate kinase
2024	 40.57	-1	2235072..2235458	-	128	16331191	-	sll1851	-	hypothetical protein
2025	 36.39	-2	2235561..2235920	+	119	16331192	-	slr1936	-	transposase
2026	 36.77	-2	2235914..2236408	+	164	16331193	-	slr1937	-	transposase
2027	 44.65	0	2236419..2237054	-	211	16331194	-	sll1849	-	hypothetical protein
2028	 51.99	0	2237134..2238189	+	351	16331195	mtnA	slr1938	-	methylthioribose-1-phosphate isomerase
2029	 55.60	+1	2238277..2238954	-	225	16331196	-	sll1848	-	hypothetical protein
2030	 50.75	0	2239239..2241248	+	669	16331197	-	slr1939	-	hypothetical protein
2031	 50.45	0	2241340..2242788	+	482	16331198	-	slr1940	-	hypothetical protein
2032	 46.03	0	2242886..2243137	+	83	16331199	-	ssr3300	-	hypothetical protein
2033	 51.88	0	2243250..2243729	-	159	16331200	-	sll1845	-	hypothetical protein
2034	 48.88	0	2243851..2245368	+	505	16331201	-	slr1942	-	circadian clock protein KaiC
2035	 52.54	0	2245407..2245583	+	58	16331202	-	ssr3304	-	hypothetical protein
2036	 48.39	0	2245636..2246631	+	331	16331203	dpm1	slr1943	-	dolichol phosphate mannose synthase
2037	 45.83	0	2246867..2248483	+	538	16331204	-	slr1944	-	hypothetical protein
2038	 53.10	0	2248578..2250176	+	532	16331205	yibO	slr1945	-	phosphoglyceromutase
2039	 47.86	0	2250241..2250474	+	77	16331206	secG	ssr3307	-	preprotein translocase subunit SecG
2040	 51.91	0	2250711..2251496	+	261	16331207	-	slr1946	-	hypothetical protein
2041	 52.61	0	2251657..2252958	-	433	16331208	odhB	sll1841	-	branched-chain alpha-keto acid dehydrogenase subunit E2
2042	 50.86	0	2253169..2253807	+	212	16331209	-	slr1949	-	hypothetical protein
2043	 53.35	+1	2254112..2256454	+	780	16331210	-	slr1950	-	cation-transporting ATPase; E1-E2 ATPase
2044	 48.95	0	2256697..2257170	+	157	16331211	-	slr1951	-	hypothetical protein
2045	 53.28	+1	2257203..2257964	+	253	16331212	-	slr0989	-	hypothetical protein
2046	 52.56	0	2258074..2259243	+	389	16331213	-	slr0990	-	hypothetical protein
2047	 49.78	0	2259402..2259863	+	153	16331214	-	slr0992	-	hypothetical protein
2048	 55.54	+1	2260429..2262576	+	715	16331215	nlpD	slr0993	-	lipoprotein; NlpD
2049	 45.49	0	2262805..2263380	-	191	16331216	lrtA	sll0947	-	light repressed protein
2050	 52.49	0	2263827..2264510	+	227	16331217	lipB	slr0994	-	lipoyltransferase
2051	 48.80	0	2264491..2264781	-	96	16331218	-	ssl1807	-	hypothetical protein
2052	 51.19	0	2265213..2266646	-	477	16331219	glgA	sll0945	-	glycogen synthase
2053	 45.05	0	2266850..2267344	-	164	16331220	-	sll0944	-	hypothetical protein
2054	 48.81	0	2267490..2269085	+	531	16331221	-	slr0320	-	hypothetical protein
2055	 52.12	0	2269126..2270163	-	345	16331222	rpoD	sll0306	-	RNA polymerase sigma factor
2056	 50.00	0	2270624..2271571	+	315	16331223	era	slr0321	-	GTP-binding protein Era
2057	 51.73	0	2271581..2274868	+	1095	16331224	-	slr0322	-	CheA like protein
2058	 39.98	-1	2274868..2277996	+	1042	16331225	ams1	slr0323	-	alpha-mannosidase
2059	 45.65	0	2277989..2278873	+	294	16331226	-	slr0324	-	OppC in a binding protein-dependent transport system
2060	 43.00	-1	2278921..2279406	+	161	16331227	-	slr0325	-	hypothetical protein
2061	 53.14	0	2279497..2280006	-	169	16331228	-	sll0301	-	hypothetical protein
2062	 52.86	0	2280267..2280947	-	226	16331229	ribC	sll0300	-	riboflavin synthase subunit alpha
2063	 45.72	0	2280998..2281441	+	147	16331230	-	slr0326	-	hypothetical protein
2064	 51.31	0	2281509..2283182	+	557	16331231	hitB	slr0327	-	iron utilization protein
2065	 45.78	0	2283232..2283705	+	157	16331232	-	slr0328	-	low molecular weight phosphotyrosine protein phosphatase
2066	 53.86	+1	2283794..2284777	+	327	16331233	xylR	slr0329	-	xylose repressor
2067	 52.29	0	2284791..2285423	-	210	16331234	-	sll0298	-	hypothetical protein
2068	 52.55	0	2285410..2285997	-	195	16331235	-	sll0297	-	hypothetical protein
2069	 46.52	0	2286186..2286746	-	186	16331236	-	sll0296	-	hypothetical protein
2070	 49.26	0	2286798..2287067	-	89	16331237	-	ssl0564	-	response regulator like protein
2071	 49.59	0	2287334..2287579	-	81	16331238	psaC	ssl0563	-	photosystem I subunit VII
2072	 50.06	0	2287948..2289525	+	525	16331239	ndhD	slr0331	-	NAD(P)H-quinone oxidoreductase subunit 4
2073	 45.17	0	2289704..2290024	+	106	16331240	-	slr0333	-	hypothetical protein
2074	 42.34	-1	2290089..2290421	+	110	16331241	-	slr0334	-	hypothetical protein
2075	 47.06	0	2290705..2290959	+	84	16331242	-	ssr0536	-	hypothetical protein
48.22	MEAN

4.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.