IslandPathversion 1.0

IslandPath Analysis: Synechocystis sp. PCC 6803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.22 STD DEV: 4.98
Synechocystis sp. PCC 6803, complete genome - 1..3573470
3172 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1874	 45.99	0	2050496..2050819	+	107	16331041	-	slr1638	-	hypothetical protein
1875	 45.38	0	2050948..2051412	+	154	16331042	smpB	slr1639	-	SsrA-binding protein
1876	 39.57	-1	2051479..2053305	-	608	16331043	-	sll1531	-	hypothetical protein
1877	 42.38	-1	2053319..2054479	-	386	16331044	-	sll1530	-	hypothetical protein
1878	 44.83	0	2054482..2057472	-	996	16331045	-	sll1528	-	hypothetical protein
1879	 41.57	-1	2057469..2060975	-	1168	16331046	-	sll1527	-	hypothetical protein
1880	 42.14	-1	2061101..2062621	-	506	16331047	-	sll1526	-	hypothetical protein
1881	 45.78	0	2062905..2065523	+	872	16331048	clpB	slr1641	-	ClpB protein
1882	 49.00	0	2065509..2065808	-	99	16331049	-	ssl2971	-	hypothetical protein
1883	 49.15	0	2066001..2066999	-	332	16331050	prk	sll1525	-	phosphoribulokinase
1884	 49.84	0	2067522..2068763	+	413	16331051	petH	slr1643	-	ferredoxin-NADP oxidoreductase
1885	 51.55	0	2068855..2069694	-	279	16331052	-	sll1524	-	hypothetical protein
1886	 53.84	+1	2070019..2070891	+	290	16331053	-	slr1644	-	hypothetical protein
1887	 54.66	+1	2070975..2071382	+	135	16331054	psbZ	slr1645	-	photosystem II 11 kD protein
1888	 50.57	0	2071379..2072074	+	231	16331055	rnc	slr1646	-	ribonuclease III
1889	 51.03	0	2072108..2072887	+	259	16331056	-	slr1647	-	hypothetical protein
1890	 52.11	0	2073161..2074603	+	480	16331057	-	slr1648	-	hypothetical protein
1891	 36.36	-2	2074694..2074957	+	87	16331058	-	ssr2754	-	hypothetical protein
1892	 49.58	0	2075381..2075971	+	196	16331059	-	slr1649	-	hypothetical protein
1893	 49.63	0	2075968..2076507	-	179	16331060	pgsA	sll1522	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
1894	 53.07	0	2076547..2078340	-	597	16331061	-	sll1521	-	hypothetical protein
1895	 47.29	0	2078366..2080120	-	584	16331062	recN	sll1520	-	DNA repair protein; RecN
1896	 47.22	0	2080885..2082720	+	611	16331063	-	slr0442	-	hypothetical protein
1897	 35.23	-2	2082864..2083916	-	350	16331064	-	sll0428	-	hypothetical protein
1898	 38.17	-2	2084575..2084760	+	61	16331065	-	ssr0756	-	hypothetical protein
1899	 45.83	0	2085445..2085684	+	79	16331066	-	ssr0759	-	hypothetical protein
1900	 41.75	-1	2085826..2086110	+	94	16331067	-	ssr0761	-	hypothetical protein
1901	 47.03	0	2086305..2087129	-	274	16331068	psbO	sll0427	-	photosystem II manganese-stabilizing polypeptide
1902	 49.74	0	2087356..2087733	+	125	16331069	-	slr0443	-	hypothetical protein
1903	 48.21	0	2088130..2088492	-	120	16331070	-	sll0426	-	hypothetical protein
1904	 54.99	+1	2088680..2090023	+	447	16331071	aroA	slr0444	-	3-phosphoshikimate 1-carboxyvinyltransferase
1905	 48.85	0	2090026..2091630	-	534	16331072	-	sll0424	-	hypothetical protein
1906	 49.15	0	2091711..2092178	-	155	16331073	-	sll0423	-	hypothetical protein
1907	 51.11	0	2092519..2093508	-	329	16331074	-	sll0422	-	asparaginase
1908	 51.16	0	2093629..2094924	-	431	16331075	purB	sll0421	-	adenylosuccinate lyase
1909	 45.34	0	2095034..2095666	+	210	16331076	-	slr0445	-	hypothetical protein
1910	 51.89	0	2095723..2096040	-	105	16331077	ureB	sll0420	-	urease subunit beta
1911	 48.60	0	2096076..2096540	-	154	16331078	-	sll0419	-	hypothetical protein
1912	 53.50	+1	2096618..2097574	-	318	16331079	-	sll0418	-	sterol-C-methyltransferase
1913	 51.77	0	2097643..2098602	+	319	16331080	dnaX	slr0446	-	DNA polymerase III subunit delta'
1914	 51.75	0	2098921..2100261	+	446	16331081	amiC	slr0447	-	negative aliphatic amidase regulator
1915	 50.92	0	2100463..2101980	+	505	16331082	sms	slr0448	-	DNA repair protein RadA
1916	 50.76	0	2101977..2102567	-	196	16331083	-	sll0274	-	hypothetical protein
1917	 48.00	0	2102769..2104391	-	540	16331084	-	sll0273	-	Na+/H+ exchanger
1918	 52.32	0	2104439..2104912	-	157	16331085	-	sll0272	-	hypothetical protein
1919	 53.26	+1	2104943..2105770	-	275	16331086	nusB	sll0271	-	transcription antitermination protein NusB
1920	 53.90	+1	2105813..2107645	+	610	16331087	-	slr0280	-	hypothetical protein
1921	 51.16	0	2107664..2110159	-	831	16331088	priA	sll0270	-	primosome assembly protein PriA
1922	 51.93	0	2110166..2110579	-	137	16331089	-	sll0269	-	hypothetical protein
1923	 54.17	+1	2110697..2111104	-	135	16331090	-	sll0268	-	hypothetical protein
1924	 50.37	0	2111141..2115877	-	1578	16331091	-	sll0267	-	hypothetical protein
1925	 44.23	0	2116083..2117321	-	412	16331092	-	sll0266	-	hypothetical protein
1926	 45.81	0	2117309..2118214	-	301	16331093	-	sll0265	-	hypothetical protein
1927	 42.65	-1	2118198..2119388	-	396	16331094	-	sll0264	-	hypothetical protein
1928	 48.47	0	2119301..2120020	-	239	16331095	-	sll0263	-	hypothetical protein
1929	 45.28	0	2120067..2121146	-	359	16331096	desD(des6)	sll0262	-	delta-6 desaturase
1930	 50.97	0	2121641..2123347	-	568	16331097	-	sll0261	-	potassium channel
1931	 48.15	0	2123646..2123996	+	116	16331098	-	slr0284	-	hypothetical protein
1932	 34.81	-2	2124296..2124973	+	225	16331099	-	slr0285	-	hypothetical protein
1933	 33.18	-2	2124966..2126246	+	426	16331100	-	slr0286	-	hypothetical protein
1934	 50.56	0	2126243..2127589	-	448	16331101	-	sll0260	-	hemolysin
1935	 49.40	0	2127879..2128127	+	82	16331102	rpsP	ssr0482	-	30S ribosomal protein S16
1936	 55.74	+1	2128168..2128524	+	118	16331103	-	slr0287	-	hypothetical protein
1937	 49.89	0	2128767..2130941	+	724	16331104	glnN	slr0288	-	glutamate--ammonia ligase
1938	 39.31	-1	2131105..2131539	+	144	16331105	-	slr0291	-	hypothetical protein
1939	 50.10	0	2131616..2132098	-	160	16331106	psbV	sll0258	-	cytochrome c-550
1940	 50.75	0	2132257..2132457	-	66	16331107	-	ssl0483	-	hypothetical protein
1941	 53.33	+1	2132796..2133545	+	249	16331108	-	slr0292	-	hypothetical protein
1942	 48.10	0	2133549..2134022	-	157	16331109	-	sll0257	-	hypothetical protein
1943	 51.56	0	2134202..2137153	+	983	16331110	gcvP	slr0293	-	glycine dehydrogenase
1944	 41.46	-1	2137259..2137738	+	159	16331111	-	slr0294	-	hypothetical protein
1945	 32.32	-2	2137686..2138081	+	131	16331112	-	slr0392	-	hypothetical protein
1946	 34.97	-2	2138074..2138439	+	121	16331113	-	slr0393	-	hypothetical protein
1947	 47.38	0	2138723..2139142	-	139	16331114	-	sll0364	-	hypothetical protein
1948	 53.69	+1	2139271..2140395	+	374	16331115	pgk	slr0394	-	phosphoglycerate kinase
1949	 45.59	0	2140664..2141593	+	309	16331116	ntcB	slr0395	-	transcriptional activator protein; NtcB
1950	 49.66	0	2141613..2144246	-	877	16331117	alaS	sll0362	-	alanyl-tRNA synthetase
1951	 48.20	0	2144427..2144897	-	156	16331118	-	sll0361	-	hypothetical protein
1952	 50.24	0	2144979..2145812	-	277	16331119	-	sll0360	-	hypothetical protein
1953	 44.23	0	2146000..2146467	-	155	16331120	-	sll0359	-	hypothetical protein
1954	 51.04	0	2146801..2147376	+	191	16331121	-	slr0397	-	hypothetical protein
1955	 50.21	0	2147548..2148033	+	161	16331122	-	slr0398	-	hypothetical protein
1956	 50.05	0	2148253..2149233	+	326	16331123	ycf39	slr0399	-	ycf39 gene product
1957	 52.83	0	2149333..2150250	+	305	16331124	ppnK	slr0400	-	inorganic polyphosphate/ATP-NAD kinase
1958	 50.22	0	2150247..2151401	+	384	16331125	-	slr0401	-	spermidine/putrescine-binding periplasmic protein
1959	 47.86	0	2151606..2152190	+	194	16331126	-	slr0402	-	putative deoxyribonucleotide triphosphate pyrophosphatase
1960	 48.84	0	2152291..2152548	-	85	16331127	glnB	ssl0707	-	nitrogen regulatory protein P-II
1961	 51.70	0	2152932..2153933	+	333	16331128	-	slr0404	-	hypothetical protein
1962	 54.76	+1	2154205..2154498	+	97	16331129	-	ssr0657	-	hypothetical protein
1963	 52.51	0	2154516..2155172	-	218	16331130	trpF	sll0356	-	N-(5'-phosphoribosyl)anthranilate isomerase
1964	 49.45	0	2155273..2156265	-	330	16331131	-	sll0355	-	hypothetical protein
1965	 49.03	0	2156497..2156961	-	154	16331132	-	sll0354	-	hypothetical protein
1966	 46.94	0	2157442..2158470	+	342	16331133	pyrC	slr0406	-	dihydroorotase
1967	 45.02	0	2158543..2159355	+	270	16331134	-	slr0407	-	hypothetical protein
1968	 46.06	0	2159620..2172219	+	4199	16331135	-	slr0408	-	integrin alpha subunit protein
1969	 42.45	-1	2172365..2173099	+	244	16331136	-	slr0142	-	hypothetical protein
1970	 51.31	0	2173197..2176772	+	1191	16331137	-	slr0143	-	beta transducin-like protein
1971	 46.89	0	2177115..2177903	+	262	16331138	-	slr0144	-	hypothetical protein
1972	 52.31	0	2177900..2178310	+	136	16331139	-	slr0145	-	hypothetical protein
1973	 51.07	0	2178325..2178837	+	170	16331140	-	slr0146	-	hypothetical protein
48.22	MEAN

4.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.