IslandPath Analysis: Synechocystis sp. PCC 6803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.22   STD DEV: 4.98
Synechocystis sp. PCC 6803, complete genome - 1..3573470
3172 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
142	 42.86	-1	156741..157013	-	90	16329312	-	ssl0410	-	hypothetical protein
143	 50.70	0	157050..158615	-	521	16329313	ndhB	sll0223	-	NAD(P)H-quinone oxidoreductase subunit 2
144	 50.87	0	158757..159737	-	326	16329314	phoA	sll0222	-	alkaline phosphatase
145	 54.00	+1	159812..159961	-	49	16329315	-	sgl0002	-	hypothetical protein
146	 48.89	0	160004..160093	-	29	16329316	ycf6	sml0004	-	hypothetical protein
147	 48.81	0	160258..161058	+	266	16329317	-	slr0254	-	hypothetical protein
148	 51.53	0	161088..161642	-	184	16329318	bcp	sll0221	-	bacterioferritin comigratory protein
149	 51.05	0	161768..163663	-	631	16329319	glmS	sll0220	-	D-fructose-6-phosphate amidotransferase
150	 50.08	0	164037..165821	-	594	16329320	-	sll0219	-	potential FMN-protein
151	 49.13	0	165871..166389	-	172	16329321	-	sll0218	-	hypothetical protein
152	 51.76	0	166416..168152	-	578	16329322	-	sll0217	-	potential FMN-protein
153	 51.69	0	168533..169921	+	462	16329323	ctpB	slr0257	-	carboxyl-terminal protease
154	 48.97	0	169934..170566	-	210	16329324	-	sll0216	-	hypothetical protein
155	 51.85	0	170572..171840	+	422	16329325	-	slr1411	-	hypothetical protein
156	 50.69	0	171939..172883	-	314	16329326	atpC	sll1327	-	F0F1 ATP synthase subunit gamma
157	 52.05	0	173014..174525	-	503	16329327	atpA	sll1326	-	F0F1 ATP synthase subunit alpha
158	 52.69	0	174586..175143	-	185	16329328	atpD	sll1325	-	F0F1 ATP synthase subunit delta
159	 52.41	0	175143..175682	-	179	16329329	atpF	sll1324	-	F0F1 ATP synthase subunit B
160	 52.08	0	175708..176139	-	143	16329330	atpG	sll1323	-	F0F1 ATP synthase subunit B'
161	 50.81	0	176256..176501	-	81	16329331	atpH	ssl2615	-	F0F1 ATP synthase subunit C
162	 49.58	0	176693..177523	-	276	16329332	atpI	sll1322	-	F0F1 ATP synthase subunit A
163	 48.99	0	177592..178038	-	148	16329333	atp1	sll1321	-	hypothetical protein
164	 53.25	+1	178237..179682	+	481	16329334	-	slr1413	-	hypothetical protein
165	 47.34	0	179734..181047	+	437	16329335	-	slr1414	-	sensory transduction histidine kinase
166	 52.31	0	181073..182221	+	382	16329336	-	slr1415	-	hypothetical protein
167	 51.53	0	182354..183298	+	314	16329337	morR	slr1416	-	MorR protein
168	 47.62	0	183493..183849	+	118	16329338	-	slr1417	-	hypothetical protein
169	 42.93	-1	183935..184924	-	329	16329339	-	sll1319	-	hypothetical protein
170	 50.37	0	184968..185636	-	222	16329340	-	sll1318	-	hypothetical protein
171	 49.17	0	185772..186554	-	260	16329341	-	sll1041	-	ABC transporter
172	 48.69	0	186601..188898	-	765	16329342	-	sll1040	-	hypothetical protein
173	 54.59	+1	189128..189715	+	195	16329343	folK	slr1093	-	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokin ase
174	 49.49	0	190033..190818	+	261	16329344	-	slr1094	-	hypothetical protein
175	 49.30	0	190815..191954	-	379	16329345	-	sll1039	-	hypothetical protein
176	 43.98	0	192136..192783	+	215	16329346	-	slr1095	-	hypothetical protein
177	 52.47	0	192870..194306	+	478	16329347	phdD	slr1096	-	dihydrolipoamide dehydrogenase
178	 50.20	0	194310..194801	+	163	16329348	-	slr1097	-	hypothetical protein
179	 54.68	+1	194859..195617	+	252	16329349	-	slr1098	-	hypothetical protein
180	 55.56	+1	195685..196305	+	206	16329350	ubiX	slr1099	-	aromatic acid decarboxylase
181	 45.67	0	196611..196991	+	126	16329351	-	slr1100	-	hypothetical protein
182	 51.68	0	197231..197557	+	108	16329352	-	slr1101	-	hypothetical protein
183	 49.88	0	197624..200185	+	853	16329353	-	slr1102	-	hypothetical protein
184	 46.68	0	200405..202525	+	706	16329354	-	slr1103	-	hypothetical protein
185	 46.47	0	202554..204395	+	613	16329355	-	slr1104	-	hypothetical protein
186	 51.39	0	204604..206397	+	597	16329356	fus	slr1105	-	elongation factor EF-G
187	 48.44	0	206863..208338	-	491	16329357	-	sll1037	-	hypothetical protein
188	 49.60	0	208549..209427	-	292	16329358	-	sll1036	-	hypothetical protein
189	 46.67	0	209527..209826	-	99	16329359	-	ssl2009	-	hypothetical protein
190	 52.38	0	209896..210546	-	216	16329360	upp	sll1035	-	uracil phosphoribosyltransferase
191	 52.89	0	210781..211629	+	282	16329361	phb	slr1106	-	prohibitin
192	 48.61	0	211734..213068	+	444	16329362	-	slr1107	-	hypothetical protein
193	 49.93	0	213031..215037	-	668	16329363	-	sll1033	-	hypothetical protein
194	 50.69	0	215504..216229	-	241	16329364	ccmN	sll1032	-	hypothetical protein
195	 54.60	+1	216264..218327	-	687	16329365	ccmM	sll1031	-	carbon dioxide concentrating mechanism protein; CcmM
196	 54.46	+1	218407..218709	-	100	16329366	ccmL	sll1030	-	carbon dioxide concentrating mechanism protein; CcmL
197	 54.76	+1	218742..219077	-	111	16329367	ccmK	sll1028	-	carbon dioxide concentrating mechanism protein; CcmK
198	 52.56	0	219206..219517	-	103	16329368	ccmK	sll1029	-	carbon dioxide concentrating mechanism protein; CcmK
199	 53.74	+1	219979..221463	-	494	16329369	gltD	sll1027	-	NADH-glutamate synthase small subunit
200	 52.87	0	221742..223067	+	441	16329370	ank	slr1109	-	erythroid ankyrin
201	 50.95	0	223018..223596	+	192	16329371	-	slr1110	-	hypothetical protein
202	 48.24	0	223673..224806	+	377	16329372	-	slr1772	-	hypothetical protein
203	 48.19	0	224897..226363	-	488	16329373	-	sll1686	-	hypothetical protein
204	 47.95	0	226928..227098	+	56	16329374	-	ssr2972	-	hypothetical protein
205	 40.80	-1	227123..227899	+	258	16329375	-	slr1773	-	hypothetical protein
206	 50.92	0	227943..228812	+	289	16329376	-	slr1774	-	hypothetical protein
207	 44.15	0	228866..230566	+	566	16329377	-	slr1776	-	high affinity sulfate transporter
208	 37.14	-2	230658..231839	-	393	16329378	ycf10	sll1685	-	proton extrusion protein PcxA
209	 52.98	0	232008..234038	+	676	16329379	chlD	slr1777	-	Mg chelatase subunit; ChlD
210	 36.33	-2	234305..234838	+	177	16329380	-	slr1778	-	hypothetical protein
211	 46.49	0	234905..236356	-	483	16329381	cad	sll1683	-	lysine decarboxylase
212	 52.26	0	236356..237438	-	360	16329382	-	sll1682	-	alanine dehydrogenase
213	 54.82	+1	237600..238325	+	241	161344770	pdxJ	slr1779	-	pyridoxal phosphate biosynthetic protein PdxJ
214	 41.29	-1	238344..238745	+	133	16329384	-	slr1780	-	hypothetical protein
215	 49.21	0	238804..240327	-	507	16329385	-	sll1681	-	hypothetical protein
216	 46.70	0	240299..240829	-	176	16329386	-	sll1680	-	methionine sulfoxide reductase B
217	 55.53	+1	240863..242047	-	394	16329387	hhoA	sll1679	-	protease; HhoA
218	 50.41	0	242246..243094	+	282	16329388	-	slr1783	-	NarL subfamily protein
219	 46.61	0	243158..244144	+	328	16329389	bvdR	slr1784	-	biliverdin reductase
220	 46.45	0	244160..244708	-	182	16329390	-	sll1678	-	spore maturation protein A
221	 46.79	0	244783..245436	-	217	16329391	-	sll1677	-	spore maturation protein B
222	 51.52	0	245502..247019	-	505	16329392	malQ	sll1676	-	4-alpha-glucanotransferase
223	 50.55	0	247117..247569	-	150	16329393	-	sll1675	-	hypothetical protein
224	 50.96	0	247619..248713	+	364	16329394	-	slr1787	-	thiamine monophosphate kinase
225	 41.76	-1	249062..250117	+	351	16329395	-	slr1788	-	hypothetical protein
226	 41.23	-1	250160..251641	+	493	16329396	-	slr1789	-	hypothetical protein
227	 40.54	-1	251758..253116	-	452	16329397	-	sll1673	-	regulatory components of sensory transduction system
228	 38.56	-1	253125..255629	-	834	16329398	-	sll1672	-	hybrid sensory kinase
229	 49.07	0	255823..256305	-	160	16329399	-	sll1671	-	hypothetical protein
230	 47.08	0	256647..257279	+	210	16329400	-	slr1790	-	hypothetical protein
231	 49.87	0	257426..258175	+	249	16329401	cysH	slr1791	-	phosphoadenosine phosphosulfate reductase
232	 48.37	0	258227..259363	-	378	16329402	hrcA	sll1670	-	heat-inducible transcription repressor
233	 53.33	+1	259702..260271	-	189	16329403	aroK	sll1669	-	shikimate kinase
234	 50.00	0	260463..261638	+	391	16329404	talB	slr1793	-	transaldolase/EF-hand domain-containing protein
235	 46.97	0	261863..262060	+	65	16329405	-	ssr2998	-	hypothetical protein
236	 53.54	+1	262177..263265	+	362	16329406	-	slr1794	-	hypothetical protein
237	 52.87	0	263321..263965	+	214	16329407	msrA	slr1795	-	methionine sulfoxide reductase A
238	 46.18	0	264190..264477	+	95	16329408	-	ssr3000	-	hypothetical protein
239	 48.69	0	264516..265316	-	266	16329409	mom72	sll1667	-	mitochondrial outer membrane 72K protein
240	 53.14	0	265414..265938	-	174	16329410	dnaJ	sll1666	-	DnaJ protein
241	 47.03	0	265995..266600	+	201	16329411	-	slr1796	-	hypothetical protein
48.22	MEAN

4.98	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.