IslandPathversion 1.0

IslandPath Analysis: Synechocystis sp. PCC 6803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.22 STD DEV: 4.98
Synechocystis sp. PCC 6803, complete genome - 1..3573470
3172 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1827	 49.39	0	2006824..2007807	+	327	16330994	-	slr0942	-	aldehyde reductase
1828	 49.72	0	2007850..2008752	+	300	16330995	fda	slr0943	-	fructose-1,6-bisphosphate aldolase
1829	 39.96	-1	2008874..2010004	-	376	16330996	-	sll0914	-	hypothetical protein
1830	 46.18	0	2010218..2011369	+	383	16330997	-	slr0944	-	hypothetical protein
1831	 50.08	0	2011521..2012141	+	206	16330998	-	slr0945	-	hypothetical protein
1832	 50.51	0	2012231..2012626	+	131	16330999	arsC	slr0946	-	arsenate reductase
1833	 54.61	+1	2012781..2013485	+	234	16331000	-	slr0947	-	OmpR subfamily
1834	 49.38	0	2013538..2014185	+	215	16331001	-	slr0948	-	hypothetical protein
1835	 45.21	0	2014182..2014787	-	201	16331002	-	sll0913	-	hypothetical protein
1836	 45.84	0	2014908..2016818	-	636	16331003	-	sll0912	-	ABC transporter
1837	 50.06	0	2017104..2017964	+	286	16331004	livH	slr0949	-	high-affinity branched-chain amino acid transport permease protein
1838	 52.85	0	2017964..2018788	+	274	16331005	-	slr0950	-	hypothetical protein
1839	 36.18	-2	2018851..2019237	-	128	16331006	-	sll0911	-	hypothetical protein
1840	 30.59	-2	2019253..2020344	-	363	16331007	-	sll0910	-	hypothetical protein
1841	 43.67	0	2020349..2021035	-	228	16331008	-	sll0909	-	hypothetical protein
1842	 51.66	0	2021252..2021944	+	230	16331009	ispD	slr0951	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
1843	 49.23	0	2022028..2023071	+	347	16331010	fbp	slr0952	-	fructose-1,6-bisphosphatase
1844	 50.88	0	2023278..2024012	+	244	16331011	-	slr0953	-	hypothetical protein
1845	 48.36	0	2024264..2024476	+	70	16331012	-	ssr1600	-	hypothetical protein
1846	 53.01	0	2024549..2024980	+	143	16331013	-	slr0954	-	hypothetical protein
1847	 53.16	0	2024993..2026147	+	384	16331014	-	slr0955	-	hypothetical protein
1848	 50.64	0	2026227..2026538	+	103	16331015	-	slr0957	-	hypothetical protein
1849	 52.62	0	2026675..2028126	+	483	16331016	cysS	slr0958	-	cysteinyl-tRNA synthetase
1850	 53.91	+1	2028157..2028744	-	195	16331017	maf	sll0905	-	Maf-like protein
1851	 48.99	0	2028832..2030421	+	529	16331018	-	slr0959	-	hypothetical protein
1852	 38.78	-1	2030534..2030974	+	146	16331019	-	slr0960	-	hypothetical protein
1853	 50.71	0	2031001..2032473	-	490	16331020	-	sll1541	-	lignostilbene-alpha,beta-dioxygenase
1854	 52.58	0	2032601..2032891	+	96	16331021	clpS	ssr2723	-	ATP-dependent Clp protease adaptor protein ClpS
1855	 51.24	0	2032951..2034123	-	390	16331022	dpm1	sll1540	-	dolichyl-phosphate-mannose synthase
1856	 49.07	0	2034162..2034803	+	213	161344757	ppa	slr1622	-	inorganic pyrophosphatase
1857	 44.26	0	2035067..2035432	+	121	16331024	-	slr1623	-	hypothetical protein
1858	 51.20	0	2035474..2036850	+	458	16331025	-	slr1624	-	hypothetical protein
1859	 49.54	0	2036911..2038527	-	538	16331026	bgl	sll1538	-	beta-glucosidase
1860	 46.90	0	2038644..2039063	-	139	16331027	-	sll1537	-	hypothetical protein
1861	 46.36	0	2039078..2039530	+	150	16331028	-	slr1626	-	hypothetical protein
1862	 40.90	-1	2039541..2040161	+	206	16331029	-	slr1627	-	hypothetical protein
1863	 50.98	0	2040280..2041458	-	392	16331030	moeB	sll1536	-	hypothetical protein
1864	 51.60	0	2041594..2041998	+	134	16331031	-	slr1628	-	hypothetical protein
1865	 50.61	0	2041999..2042982	+	327	16331032	-	slr1629	-	hypothetical protein
1866	 49.04	0	2043107..2043838	-	243	16331033	rfbP	sll1535	-	galactosyl-1-phosphate transferase
1867	 49.96	0	2043938..2045074	-	378	16331034	-	sll1534	-	hypothetical protein
1868	 53.61	+1	2045078..2046364	-	428	16331035	pilT	sll1533	-	twitching mobility protein
1869	 47.73	0	2046961..2047335	+	124	16331036	-	slr1634	-	hypothetical protein
1870	 53.93	+1	2047495..2048130	-	211	16331037	-	sll1532	-	hypothetical protein
1871	 46.75	0	2048144..2048374	-	76	16331038	-	ssl2982	-	DNA-directed RNA polymerase subunit omega
1872	 32.35	-2	2048497..2049513	+	338	16331039	-	slr1635	-	transposase
1873	 46.22	0	2049510..2050130	+	206	16331040	-	slr1636	-	hypothetical protein
1874	 45.99	0	2050496..2050819	+	107	16331041	-	slr1638	-	hypothetical protein
1875	 45.38	0	2050948..2051412	+	154	16331042	smpB	slr1639	-	SsrA-binding protein
1876	 39.57	-1	2051479..2053305	-	608	16331043	-	sll1531	-	hypothetical protein
1877	 42.38	-1	2053319..2054479	-	386	16331044	-	sll1530	-	hypothetical protein
1878	 44.83	0	2054482..2057472	-	996	16331045	-	sll1528	-	hypothetical protein
1879	 41.57	-1	2057469..2060975	-	1168	16331046	-	sll1527	-	hypothetical protein
1880	 42.14	-1	2061101..2062621	-	506	16331047	-	sll1526	-	hypothetical protein
1881	 45.78	0	2062905..2065523	+	872	16331048	clpB	slr1641	-	ClpB protein
1882	 49.00	0	2065509..2065808	-	99	16331049	-	ssl2971	-	hypothetical protein
1883	 49.15	0	2066001..2066999	-	332	16331050	prk	sll1525	-	phosphoribulokinase
1884	 49.84	0	2067522..2068763	+	413	16331051	petH	slr1643	-	ferredoxin-NADP oxidoreductase
1885	 51.55	0	2068855..2069694	-	279	16331052	-	sll1524	-	hypothetical protein
1886	 53.84	+1	2070019..2070891	+	290	16331053	-	slr1644	-	hypothetical protein
1887	 54.66	+1	2070975..2071382	+	135	16331054	psbZ	slr1645	-	photosystem II 11 kD protein
1888	 50.57	0	2071379..2072074	+	231	16331055	rnc	slr1646	-	ribonuclease III
1889	 51.03	0	2072108..2072887	+	259	16331056	-	slr1647	-	hypothetical protein
1890	 52.11	0	2073161..2074603	+	480	16331057	-	slr1648	-	hypothetical protein
1891	 36.36	-2	2074694..2074957	+	87	16331058	-	ssr2754	-	hypothetical protein
1892	 49.58	0	2075381..2075971	+	196	16331059	-	slr1649	-	hypothetical protein
1893	 49.63	0	2075968..2076507	-	179	16331060	pgsA	sll1522	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
1894	 53.07	0	2076547..2078340	-	597	16331061	-	sll1521	-	hypothetical protein
1895	 47.29	0	2078366..2080120	-	584	16331062	recN	sll1520	-	DNA repair protein; RecN
1896	 47.22	0	2080885..2082720	+	611	16331063	-	slr0442	-	hypothetical protein
1897	 35.23	-2	2082864..2083916	-	350	16331064	-	sll0428	-	hypothetical protein
1898	 38.17	-2	2084575..2084760	+	61	16331065	-	ssr0756	-	hypothetical protein
1899	 45.83	0	2085445..2085684	+	79	16331066	-	ssr0759	-	hypothetical protein
1900	 41.75	-1	2085826..2086110	+	94	16331067	-	ssr0761	-	hypothetical protein
1901	 47.03	0	2086305..2087129	-	274	16331068	psbO	sll0427	-	photosystem II manganese-stabilizing polypeptide
1902	 49.74	0	2087356..2087733	+	125	16331069	-	slr0443	-	hypothetical protein
1903	 48.21	0	2088130..2088492	-	120	16331070	-	sll0426	-	hypothetical protein
1904	 54.99	+1	2088680..2090023	+	447	16331071	aroA	slr0444	-	3-phosphoshikimate 1-carboxyvinyltransferase
1905	 48.85	0	2090026..2091630	-	534	16331072	-	sll0424	-	hypothetical protein
1906	 49.15	0	2091711..2092178	-	155	16331073	-	sll0423	-	hypothetical protein
1907	 51.11	0	2092519..2093508	-	329	16331074	-	sll0422	-	asparaginase
1908	 51.16	0	2093629..2094924	-	431	16331075	purB	sll0421	-	adenylosuccinate lyase
1909	 45.34	0	2095034..2095666	+	210	16331076	-	slr0445	-	hypothetical protein
1910	 51.89	0	2095723..2096040	-	105	16331077	ureB	sll0420	-	urease subunit beta
1911	 48.60	0	2096076..2096540	-	154	16331078	-	sll0419	-	hypothetical protein
1912	 53.50	+1	2096618..2097574	-	318	16331079	-	sll0418	-	sterol-C-methyltransferase
1913	 51.77	0	2097643..2098602	+	319	16331080	dnaX	slr0446	-	DNA polymerase III subunit delta'
1914	 51.75	0	2098921..2100261	+	446	16331081	amiC	slr0447	-	negative aliphatic amidase regulator
1915	 50.92	0	2100463..2101980	+	505	16331082	sms	slr0448	-	DNA repair protein RadA
1916	 50.76	0	2101977..2102567	-	196	16331083	-	sll0274	-	hypothetical protein
1917	 48.00	0	2102769..2104391	-	540	16331084	-	sll0273	-	Na+/H+ exchanger
1918	 52.32	0	2104439..2104912	-	157	16331085	-	sll0272	-	hypothetical protein
1919	 53.26	+1	2104943..2105770	-	275	16331086	nusB	sll0271	-	transcription antitermination protein NusB
1920	 53.90	+1	2105813..2107645	+	610	16331087	-	slr0280	-	hypothetical protein
1921	 51.16	0	2107664..2110159	-	831	16331088	priA	sll0270	-	primosome assembly protein PriA
1922	 51.93	0	2110166..2110579	-	137	16331089	-	sll0269	-	hypothetical protein
1923	 54.17	+1	2110697..2111104	-	135	16331090	-	sll0268	-	hypothetical protein
1924	 50.37	0	2111141..2115877	-	1578	16331091	-	sll0267	-	hypothetical protein
1925	 44.23	0	2116083..2117321	-	412	16331092	-	sll0266	-	hypothetical protein
1926	 45.81	0	2117309..2118214	-	301	16331093	-	sll0265	-	hypothetical protein
48.22	MEAN

4.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.