IslandPathversion 1.0

IslandPath Analysis: Synechocystis sp. PCC 6803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.22 STD DEV: 4.98
Synechocystis sp. PCC 6803, complete genome - 1..3573470
3172 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1785	 53.60	+1	1957758..1958132	+	124	16330952	rplU	slr1678	-	50S ribosomal protein L21
1786	 54.17	+1	1958240..1958503	+	87	16330953	rpmA	ssr2799	-	50S ribosomal protein L27
1787	 48.66	0	1958582..1959325	+	247	16330954	-	slr1679	-	hypothetical protein
1788	 51.28	0	1959436..1961079	-	547	16330955	leuA	sll1564	-	alpha-isopropylmalate/homocitrate synthase family transferase
1789	 45.06	0	1961439..1961600	+	53	16330956	-	ssr2802	-	ABC transporter
1790	 44.05	0	1961625..1961876	+	83	16330957	-	ssr2803	-	hypothetical protein
1791	 48.33	0	1962366..1962545	+	59	16330958	-	ssr2806	-	hypothetical protein
1792	 36.84	-2	1962705..1965524	-	939	16330959	-	sll1563	-	hypothetical protein
1793	 38.92	-1	1965485..1965949	-	154	16330960	-	sll1562	-	hypothetical protein
1794	 50.76	0	1966146..1969118	-	990	16330961	putA	sll1561	-	delta-1-pyrroline-5-carboxylate dehydrogenase
1795	 46.11	0	1969468..1970430	+	320	16330962	-	slr1681	-	hypothetical protein
1796	 32.11	-2	1970581..1970988	+	135	16330963	-	slr1682	-	transposase
1797	 32.06	-2	1970952..1971968	-	338	16330964	-	sll1560	-	transposase
1798	 35.35	-2	1972154..1972549	+	131	16330965	-	slr1683	-	transposase
1799	 30.46	-2	1972609..1973061	+	150	16330966	-	slr1684	-	transposase
1800	 51.00	0	1973611..1974765	-	384	16330967	-	sll1559	-	soluble hydrogenase 42 kD subunit
1801	 51.88	0	1975056..1975481	+	141	16330968	-	slr1686	-	hypothetical protein
1802	 48.67	0	1975575..1975874	-	99	16330969	-	ssl3044	-	hydrogenase component
1803	 53.85	+1	1976019..1976720	+	233	16330970	-	slr1687	-	hypothetical protein
1804	 50.21	0	1976799..1977965	-	388	16330971	-	sll1558	-	mannose-1-phosphate guanyltransferase
1805	 53.47	+1	1978131..1979039	-	302	16330972	sucD	sll1557	-	succinyl-CoA synthetase
1806	 53.81	+1	1979144..1980193	-	349	16330973	-	sll1556	-	isopentenyl pyrophosphate isomerase
1807	 50.32	0	1980365..1981471	-	368	16330974	-	sll1555	-	hybrid sensory kinase
1808	 49.33	0	1982049..1982273	+	74	16330975	psaE	ssr2831	-	photosystem I reaction center subunit IV
1809	 52.55	0	1982308..1983171	+	287	16330976	mutM	slr1689	-	formamidopyrimidine-DNA glycosylase
1810	 43.77	0	1983147..1983932	+	261	16330977	-	slr1690	-	hypothetical protein
1811	 47.58	0	1983982..1985658	+	558	16330978	nadE	slr1691	-	NAD synthetase
1812	 42.34	-1	1985874..1986872	+	332	16330979	-	slr1692	-	hypothetical protein
1813	 43.13	-1	1987100..1988242	+	380	16330980	-	slr1693	-	PatA subfamily protein
1814	 45.47	0	1988385..1988837	+	150	16330981	-	slr1694	-	activator of photopigment and puc expression
1815	 53.10	0	1988834..1991266	-	810	16330982	pheT	sll1553	-	phenylalanyl-tRNA synthetase subunit beta
1816	 50.61	0	1991550..1993274	+	574	16330983	pknA	slr1697	-	eukariotic protein kinase
1817	 51.57	0	1993377..1994045	-	222	16330984	-	sll0921	-	NarL subfamily protein
1818	 50.47	0	1994147..1997251	-	1034	16330985	ppc	sll0920	-	phosphoenolpyruvate carboxylase
1819	 53.59	+1	1997993..1998451	+	152	16330986	-	slr0935	-	hypothetical protein
1820	 52.48	0	1998460..1999347	+	295	16330987	nadC	slr0936	-	nicotinate-nucleotide pyrophosphorylase
1821	 49.84	0	1999477..2000730	+	417	16330988	-	slr0937	-	hypothetical protein
1822	 49.35	0	2000815..2002194	+	459	16330989	-	slr0938	-	hypothetical protein
1823	 50.76	0	2002241..2002894	-	217	16330990	cbiC	sll0916	-	precorrin-8X methylmutase
1824	 50.22	0	2002891..2004465	-	524	16330991	pqqE	sll0915	-	protease
1825	 50.41	0	2004626..2006095	+	489	16330992	crtQ	slr0940	-	zeta-carotene desaturase precursor
1826	 49.55	0	2006120..2006563	+	147	16330993	-	slr0941	-	hypothetical protein
1827	 49.39	0	2006824..2007807	+	327	16330994	-	slr0942	-	aldehyde reductase
1828	 49.72	0	2007850..2008752	+	300	16330995	fda	slr0943	-	fructose-1,6-bisphosphate aldolase
1829	 39.96	-1	2008874..2010004	-	376	16330996	-	sll0914	-	hypothetical protein
1830	 46.18	0	2010218..2011369	+	383	16330997	-	slr0944	-	hypothetical protein
1831	 50.08	0	2011521..2012141	+	206	16330998	-	slr0945	-	hypothetical protein
1832	 50.51	0	2012231..2012626	+	131	16330999	arsC	slr0946	-	arsenate reductase
1833	 54.61	+1	2012781..2013485	+	234	16331000	-	slr0947	-	OmpR subfamily
1834	 49.38	0	2013538..2014185	+	215	16331001	-	slr0948	-	hypothetical protein
1835	 45.21	0	2014182..2014787	-	201	16331002	-	sll0913	-	hypothetical protein
1836	 45.84	0	2014908..2016818	-	636	16331003	-	sll0912	-	ABC transporter
1837	 50.06	0	2017104..2017964	+	286	16331004	livH	slr0949	-	high-affinity branched-chain amino acid transport permease protein
1838	 52.85	0	2017964..2018788	+	274	16331005	-	slr0950	-	hypothetical protein
1839	 36.18	-2	2018851..2019237	-	128	16331006	-	sll0911	-	hypothetical protein
1840	 30.59	-2	2019253..2020344	-	363	16331007	-	sll0910	-	hypothetical protein
1841	 43.67	0	2020349..2021035	-	228	16331008	-	sll0909	-	hypothetical protein
1842	 51.66	0	2021252..2021944	+	230	16331009	ispD	slr0951	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
1843	 49.23	0	2022028..2023071	+	347	16331010	fbp	slr0952	-	fructose-1,6-bisphosphatase
1844	 50.88	0	2023278..2024012	+	244	16331011	-	slr0953	-	hypothetical protein
1845	 48.36	0	2024264..2024476	+	70	16331012	-	ssr1600	-	hypothetical protein
1846	 53.01	0	2024549..2024980	+	143	16331013	-	slr0954	-	hypothetical protein
1847	 53.16	0	2024993..2026147	+	384	16331014	-	slr0955	-	hypothetical protein
1848	 50.64	0	2026227..2026538	+	103	16331015	-	slr0957	-	hypothetical protein
1849	 52.62	0	2026675..2028126	+	483	16331016	cysS	slr0958	-	cysteinyl-tRNA synthetase
1850	 53.91	+1	2028157..2028744	-	195	16331017	maf	sll0905	-	Maf-like protein
1851	 48.99	0	2028832..2030421	+	529	16331018	-	slr0959	-	hypothetical protein
1852	 38.78	-1	2030534..2030974	+	146	16331019	-	slr0960	-	hypothetical protein
1853	 50.71	0	2031001..2032473	-	490	16331020	-	sll1541	-	lignostilbene-alpha,beta-dioxygenase
1854	 52.58	0	2032601..2032891	+	96	16331021	clpS	ssr2723	-	ATP-dependent Clp protease adaptor protein ClpS
1855	 51.24	0	2032951..2034123	-	390	16331022	dpm1	sll1540	-	dolichyl-phosphate-mannose synthase
1856	 49.07	0	2034162..2034803	+	213	161344757	ppa	slr1622	-	inorganic pyrophosphatase
1857	 44.26	0	2035067..2035432	+	121	16331024	-	slr1623	-	hypothetical protein
1858	 51.20	0	2035474..2036850	+	458	16331025	-	slr1624	-	hypothetical protein
1859	 49.54	0	2036911..2038527	-	538	16331026	bgl	sll1538	-	beta-glucosidase
1860	 46.90	0	2038644..2039063	-	139	16331027	-	sll1537	-	hypothetical protein
1861	 46.36	0	2039078..2039530	+	150	16331028	-	slr1626	-	hypothetical protein
1862	 40.90	-1	2039541..2040161	+	206	16331029	-	slr1627	-	hypothetical protein
1863	 50.98	0	2040280..2041458	-	392	16331030	moeB	sll1536	-	hypothetical protein
1864	 51.60	0	2041594..2041998	+	134	16331031	-	slr1628	-	hypothetical protein
1865	 50.61	0	2041999..2042982	+	327	16331032	-	slr1629	-	hypothetical protein
1866	 49.04	0	2043107..2043838	-	243	16331033	rfbP	sll1535	-	galactosyl-1-phosphate transferase
1867	 49.96	0	2043938..2045074	-	378	16331034	-	sll1534	-	hypothetical protein
1868	 53.61	+1	2045078..2046364	-	428	16331035	pilT	sll1533	-	twitching mobility protein
1869	 47.73	0	2046961..2047335	+	124	16331036	-	slr1634	-	hypothetical protein
1870	 53.93	+1	2047495..2048130	-	211	16331037	-	sll1532	-	hypothetical protein
1871	 46.75	0	2048144..2048374	-	76	16331038	-	ssl2982	-	DNA-directed RNA polymerase subunit omega
1872	 32.35	-2	2048497..2049513	+	338	16331039	-	slr1635	-	transposase
1873	 46.22	0	2049510..2050130	+	206	16331040	-	slr1636	-	hypothetical protein
1874	 45.99	0	2050496..2050819	+	107	16331041	-	slr1638	-	hypothetical protein
1875	 45.38	0	2050948..2051412	+	154	16331042	smpB	slr1639	-	SsrA-binding protein
1876	 39.57	-1	2051479..2053305	-	608	16331043	-	sll1531	-	hypothetical protein
1877	 42.38	-1	2053319..2054479	-	386	16331044	-	sll1530	-	hypothetical protein
1878	 44.83	0	2054482..2057472	-	996	16331045	-	sll1528	-	hypothetical protein
1879	 41.57	-1	2057469..2060975	-	1168	16331046	-	sll1527	-	hypothetical protein
1880	 42.14	-1	2061101..2062621	-	506	16331047	-	sll1526	-	hypothetical protein
1881	 45.78	0	2062905..2065523	+	872	16331048	clpB	slr1641	-	ClpB protein
1882	 49.00	0	2065509..2065808	-	99	16331049	-	ssl2971	-	hypothetical protein
1883	 49.15	0	2066001..2066999	-	332	16331050	prk	sll1525	-	phosphoribulokinase
1884	 49.84	0	2067522..2068763	+	413	16331051	petH	slr1643	-	ferredoxin-NADP oxidoreductase
48.22	MEAN

4.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.