IslandPathversion 1.0

IslandPath Analysis: Synechocystis sp. PCC 6803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.22 STD DEV: 4.98
Synechocystis sp. PCC 6803, complete genome - 1..3573470
3172 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1706	 47.63	0	1872656..1873648	+	330	16330873	-	slr1278	-	hypothetical protein
1707	 51.96	0	1873698..1874846	-	382	16330874	thrC	sll1172	-	threonine synthase
1708	 49.86	0	1875129..1875491	+	120	16330875	ndhC	slr1279	-	NADH dehydrogenase subunit A
1709	 53.28	+1	1875563..1876309	+	248	16330876	ndhK	slr1280	-	NADH dehydrogenase subunit B
1710	 51.48	0	1876302..1876841	+	179	16330877	ndhJ	slr1281	-	NADH dehydrogenase subunit J
1711	 37.22	-2	1877208..1877567	+	119	16330878	-	slr1282	-	transposase
1712	 36.50	-2	1877582..1878055	+	157	16330879	-	slr1283	-	transposase
1713	 40.97	-1	1878099..1879682	-	527	16330880	-	sll1170	-	hypothetical protein
1714	 44.63	0	1879983..1880699	-	238	16330881	-	sll1169	-	hypothetical protein
1715	 51.83	0	1881917..1883311	+	464	16330882	-	slr1285	-	sensory transduction histidine kinase
1716	 52.21	0	1883329..1884573	-	414	16330883	pbp	sll1167	-	penicillin-binding protein 4
1717	 54.50	+1	1884739..1884927	+	62	16330884	-	ssr2130	-	hypothetical protein
1718	 54.50	+1	1885136..1886146	+	336	16330885	-	slr1287	-	hypothetical protein
1719	 50.43	0	1886153..1886737	+	194	16330886	-	slr1288	-	hypothetical protein
1720	 42.39	-1	1887159..1888262	-	367	16330887	-	sll1166	-	hypothetical protein
1721	 44.62	0	1888398..1888778	-	126	16330888	-	sll1447	-	hypothetical protein
1722	 47.77	0	1888778..1889740	-	320	16330889	-	sll1446	-	hypothetical protein
1723	 52.74	0	1889872..1890474	-	200	16330890	leuD	sll1444	-	isopropylmalate isomerase small subunit
1724	 51.60	0	1890461..1892119	-	552	16330891	pyrG	sll1443	-	CTP synthetase
1725	 40.52	-1	1892478..1892825	-	115	16330892	-	sll1442	-	hypothetical protein
1726	 45.85	0	1892918..1895425	+	835	16330893	-	slr1529	-	nitrogen assimilation regulatory protein
1727	 46.11	0	1895520..1896599	-	359	16330894	desB	sll1441	-	delta 15 desaturase
1728	 53.39	+1	1896869..1897561	-	230	16330895	pdxH	sll1440	-	pyridoxamine 5'-phosphate oxidase
1729	 45.79	0	1897570..1898412	+	280	16330896	-	slr1530	-	hypothetical protein
1730	 32.71	-2	1898437..1899240	-	267	16330897	-	sll1439	-	hypothetical protein
1731	 51.41	0	1899700..1901148	+	482	16330898	ffh	slr1531	-	signal recognition particle protein
1732	 36.77	-2	1901385..1901879	-	164	16330899	-	sll1437	-	transposase
1733	 36.39	-2	1901873..1902232	-	119	16330900	-	sll1436	-	transposase
1734	 50.06	0	1902437..1903996	-	519	16330901	gatB	sll1435	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
1735	 51.00	0	1904025..1905977	-	650	16330902	mrcA	sll1434	-	penicillin-binding protein 1B
1736	 54.03	+1	1906170..1907744	-	524	16330903	-	sll1433	-	hypothetical protein
1737	 50.47	0	1907764..1908621	-	285	16330904	hypB	sll1432	-	hydrogenase isoenzyme formation protein; HypB
1738	 48.56	0	1908804..1909151	+	115	16330905	-	slr1533	-	hypothetical protein
1739	 53.42	+1	1909190..1910095	+	301	16330906	-	slr1534	-	hypothetical protein
1740	 51.20	0	1910499..1911494	+	331	16330907	-	slr1152	-	hypothetical protein
1741	 51.39	0	1911570..1911785	-	71	16330908	-	ssl2162	-	hypothetical protein
1742	 48.26	0	1911896..1912786	-	296	16330909	glnH	sll1104	-	glutamine-binding protein
1743	 48.88	0	1912776..1914113	-	445	16330910	-	sll1103	-	hypothetical protein
1744	 45.93	0	1914113..1914652	-	179	16330911	-	sll1102	-	hypothetical protein
1745	 49.69	0	1914818..1915135	-	105	16330912	rpsJ	sll1101	-	30S ribosomal protein S10
1746	 51.33	0	1915274..1916473	-	399	16330913	tuf	sll1099	-	elongation factor Tu
1747	 52.17	0	1916533..1918608	-	691	16330914	fus	sll1098	-	elongation factor G
1748	 52.87	0	1918815..1919285	-	156	16330915	rps7	sll1097	-	30S ribosomal protein S7
1749	 54.59	+1	1919436..1919816	-	126	16330916	rpsL	sll1096	-	30S ribosomal protein S12
1750	 49.53	0	1919913..1920548	-	211	16330917	-	sll1095	-	hypothetical protein
1751	 51.19	0	1920660..1921919	+	419	16330918	purD	slr1159	-	phosphoribosylamine--glycine ligase
1752	 49.59	0	1922124..1922738	+	204	16330919	-	slr1160	-	hypothetical protein
1753	 51.85	0	1922791..1923087	-	98	16330920	rpiB	ssl2153	-	ribose phosphate isomerase B
1754	 39.27	-1	1923170..1923472	-	100	16330921	-	sll1094	-	transposase
1755	 39.17	-1	1924251..1924850	+	199	16330922	-	slr1161	-	hypothetical protein
1756	 33.97	-2	1924999..1925943	+	314	16330923	-	slr1162	-	hypothetical protein
1757	 46.02	0	1926030..1927700	+	556	16330924	-	slr1163	-	hypothetical protein
1758	 52.86	0	1927725..1928021	-	98	16330925	-	ssl2148	-	hypothetical protein
1759	 49.57	0	1928323..1930626	+	767	16330926	nrdA	slr1164	-	ribonucleotide reductase subunit alpha
1760	 54.65	+1	1931139..1932311	+	390	16330927	sat	slr1165	-	sulfate adenylyltransferase
1761	 50.80	0	1932354..1933418	+	354	16330928	-	slr1166	-	hypothetical protein
1762	 34.63	-2	1933468..1933854	-	128	16330929	-	sll1092	-	hypothetical protein
1763	 36.71	-2	1933854..1934060	-	68	16330930	-	ssl2138	-	hypothetical protein
1764	 51.57	0	1934307..1935386	-	359	16330931	-	sll1091	-	43 kD bacteriochlorophyll synthase subunit
1765	 51.90	0	1935912..1937069	+	385	16330932	gldA	slr1167	-	glycerol dehydrogenase
1766	 41.99	-1	1937086..1937397	+	103	16330933	-	slr1168	-	hypothetical protein
1767	 53.05	0	1937474..1938310	+	278	16330934	-	slr1169	-	hypothetical protein
1768	 51.98	0	1938429..1938782	+	117	16330935	-	slr1170	-	hypothetical protein
1769	 47.25	0	1938985..1939494	+	169	16330936	-	slr1171	-	glutathione peroxidase
1770	 49.84	0	1939865..1940506	-	213	16330937	-	sll1089	-	hypothetical protein
1771	 51.85	0	1940549..1942087	-	512	16330938	-	sll1087	-	sodium-coupled permease
1772	 50.43	0	1942234..1942701	-	155	16330939	-	sll1086	-	hypothetical protein
1773	 48.20	0	1942923..1944314	+	463	16330940	-	slr1173	-	hypothetical protein
1774	 53.11	0	1944345..1944521	+	58	16330941	-	ssr1951	-	hypothetical protein
1775	 49.05	0	1944586..1945374	+	262	16330942	-	slr1174	-	hypothetical protein
1776	 50.84	0	1945518..1947179	-	553	16330943	glpD	sll1085	-	glycerol-3-phosphate dehydrogenase
1777	 52.40	0	1947325..1948824	-	499	16330944	otsA	sll1566	-	alpha,alpha-trehalose-phosphate synthase
1778	 50.71	0	1949613..1952270	+	885	16330945	-	slr1670	-	hypothetical protein
1779	 51.55	0	1952323..1953810	+	495	16330946	glpK	slr1672	-	glycerol kinase
1780	 54.06	+1	1953791..1954615	+	274	16330947	spoU	slr1673	-	rRNA methylase
1781	 48.72	0	1954721..1955071	+	116	16330948	-	slr1674	-	hypothetical protein
1782	 52.05	0	1955221..1955562	+	113	16330949	hypA	slr1675	-	hydrogenase expression/formation protein; HypA
1783	 48.17	0	1955690..1956181	+	163	16330950	-	slr1676	-	hypothetical protein
1784	 52.24	0	1956260..1957486	+	408	16330951	-	slr1677	-	hypothetical protein
1785	 53.60	+1	1957758..1958132	+	124	16330952	rplU	slr1678	-	50S ribosomal protein L21
1786	 54.17	+1	1958240..1958503	+	87	16330953	rpmA	ssr2799	-	50S ribosomal protein L27
1787	 48.66	0	1958582..1959325	+	247	16330954	-	slr1679	-	hypothetical protein
1788	 51.28	0	1959436..1961079	-	547	16330955	leuA	sll1564	-	alpha-isopropylmalate/homocitrate synthase family transferase
1789	 45.06	0	1961439..1961600	+	53	16330956	-	ssr2802	-	ABC transporter
1790	 44.05	0	1961625..1961876	+	83	16330957	-	ssr2803	-	hypothetical protein
1791	 48.33	0	1962366..1962545	+	59	16330958	-	ssr2806	-	hypothetical protein
1792	 36.84	-2	1962705..1965524	-	939	16330959	-	sll1563	-	hypothetical protein
1793	 38.92	-1	1965485..1965949	-	154	16330960	-	sll1562	-	hypothetical protein
1794	 50.76	0	1966146..1969118	-	990	16330961	putA	sll1561	-	delta-1-pyrroline-5-carboxylate dehydrogenase
1795	 46.11	0	1969468..1970430	+	320	16330962	-	slr1681	-	hypothetical protein
1796	 32.11	-2	1970581..1970988	+	135	16330963	-	slr1682	-	transposase
1797	 32.06	-2	1970952..1971968	-	338	16330964	-	sll1560	-	transposase
1798	 35.35	-2	1972154..1972549	+	131	16330965	-	slr1683	-	transposase
1799	 30.46	-2	1972609..1973061	+	150	16330966	-	slr1684	-	transposase
1800	 51.00	0	1973611..1974765	-	384	16330967	-	sll1559	-	soluble hydrogenase 42 kD subunit
1801	 51.88	0	1975056..1975481	+	141	16330968	-	slr1686	-	hypothetical protein
1802	 48.67	0	1975575..1975874	-	99	16330969	-	ssl3044	-	hydrogenase component
1803	 53.85	+1	1976019..1976720	+	233	16330970	-	slr1687	-	hypothetical protein
1804	 50.21	0	1976799..1977965	-	388	16330971	-	sll1558	-	mannose-1-phosphate guanyltransferase
1805	 53.47	+1	1978131..1979039	-	302	16330972	sucD	sll1557	-	succinyl-CoA synthetase
48.22	MEAN

4.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.