IslandPathversion 1.0

IslandPath Analysis: Synechocystis sp. PCC 6803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.22 STD DEV: 4.98
Synechocystis sp. PCC 6803, complete genome - 1..3573470
3172 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1616	 51.91	0	1770690..1771421	+	243	16330783	-	slr1966	-	hypothetical protein
1617	 54.45	+1	1771458..1772243	-	261	16330784	hisF	sll1893	-	imidazole glycerol phosphate synthase subunit HisF
1618	 52.48	0	1772457..1773203	-	248	16330785	-	sll1892	-	hypothetical protein
1619	 48.88	0	1773346..1776150	+	934	16330786	-	slr1968	-	hypothetical protein
1620	 51.25	0	1776081..1776839	-	252	16330787	-	sll1891	-	hypothetical protein
1621	 53.69	+1	1776983..1777537	-	184	16330788	cobN	sll1890	-	CobN protein
1622	 48.25	0	1777729..1779981	+	750	16330789	-	slr1969	-	hybrid sensory kinase
1623	 52.11	0	1780086..1780298	+	70	16330790	-	ssr3341	-	hypothetical protein
1624	 50.96	0	1780484..1781005	+	173	16330791	-	slr1970	-	hypothetical protein
1625	 51.17	0	1781209..1782060	+	283	16330792	-	slr1971	-	hypothetical protein
1626	 50.50	0	1782057..1783355	-	432	16330793	-	sll1888	-	sensory transduction histidine kinase
1627	 48.48	0	1783442..1783672	-	76	16330794	-	ssl3549	-	hypothetical protein
1628	 49.63	0	1783855..1784934	+	359	16330795	-	slr1972	-	hypothetical protein
1629	 51.50	0	1784994..1785560	-	188	16330796	-	sll1886	-	hypothetical protein
1630	 45.94	0	1785835..1788372	-	845	16330797	-	sll1885	-	hypothetical protein
1631	 51.21	0	1788550..1789908	+	452	16330798	engA	slr1974	-	GTP-binding protein EngA
1632	 47.11	0	1790235..1791359	-	374	16330799	-	sll1884	-	hypothetical protein
1633	 55.79	+1	1791417..1792676	-	419	16330800	argJ	sll1883	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
1634	 51.03	0	1792784..1793608	-	274	16330801	-	sll1882	-	hypothetical protein
1635	 51.11	0	1793852..1795027	+	391	16330802	-	slr1975	-	renin-binding protein
1636	 48.87	0	1795121..1795564	-	147	16330803	-	sll1880	-	hypothetical protein
1637	 50.21	0	1795778..1797466	-	562	16330804	-	sll1879	-	hypothetical protein
1638	 52.39	0	1797552..1798658	-	368	16330805	-	sll1878	-	ABC transporter
1639	 52.79	0	1798804..1799538	+	244	16330806	-	slr1977	-	hypothetical protein
1640	 45.43	0	1799608..1800483	+	291	16330807	-	slr1978	-	hypothetical protein
1641	 44.10	0	1800387..1801844	+	485	16330808	trpE	slr1979	-	anthranilate synthase component I-like protein
1642	 38.70	-1	1801787..1802680	+	297	16330809	-	slr1980	-	hypothetical protein
1643	 41.68	-1	1802742..1804142	-	466	16330810	hemN	sll1876	-	coproporphyrinogen III oxidase
1644	 45.02	0	1804403..1805155	-	250	16330811	ho2	sll1875	-	heme oxygenase
1645	 45.03	0	1805220..1806296	-	358	16330812	AT103	sll1874	-	magnesium-protoporphyrin IX monomethyl ester cyclase
1646	 51.09	0	1806871..1807236	-	121	16330813	-	sll1873	-	hypothetical protein
1647	 51.15	0	1807333..1808724	-	463	16330814	lytR	sll1872	-	membrane bound protein; LytR
1648	 37.23	-2	1808922..1810946	-	674	16330815	-	sll1871	-	sensory transduction histidine kinase
1649	 49.73	0	1811130..1811501	+	123	16330816	-	slr1982	-	CheY family protein
1650	 40.12	-1	1811746..1813557	+	603	16330817	-	slr1983	-	regulatory components of sensory transduction system
1651	 40.53	-1	1813554..1814234	-	226	16330818	-	sll1870	-	ABC transporter
1652	 46.65	0	1814231..1815304	-	357	16330819	cbaB	sll1869	-	3-chlorobenzoate-3,4-dioxygenase
1653	 49.35	0	1815454..1816371	+	305	16330820	rps1	slr1984	-	30S ribosomal protein S1
1654	 43.19	-1	1816855..1818762	-	635	16330821	dnaG	sll1868	-	DNA primase
1655	 51.25	0	1818915..1819997	-	360	16330822	psbA3	sll1867	-	photosystem II D1 protein
1656	 53.17	0	1820238..1820837	-	199	16330823	-	sll1866	-	hypothetical protein
1657	 50.53	0	1820889..1821638	-	249	16330824	-	sll1390	-	hypothetical protein
1658	 47.89	0	1821824..1822036	-	70	16330825	-	ssl2717	-	hypothetical protein
1659	 50.09	0	1822054..1822620	-	188	16330826	-	sll1389	-	hypothetical protein
1660	 49.68	0	1822666..1823130	-	154	16330827	-	sll1388	-	hypothetical protein
1661	 51.28	0	1823570..1823686	+	38	16330828	petG	smr0010	-	cytochrome b6-f complex subunit PetG
1662	 52.16	0	1823968..1824732	-	254	16330829	-	sll1387	-	hypothetical protein
1663	 49.42	0	1824953..1825468	-	171	16330830	-	sll1386	-	hypothetical protein
1664	 52.02	0	1825558..1826226	+	222	16330831	-	slr1467	-	precorrin-8X methylmutase
1665	 50.44	0	1826259..1826708	+	149	16330832	-	slr1468	-	tymocyte protein cThy28kD
1666	 55.80	+1	1826764..1826901	+	45	16330833	rpmH	smr0011	-	50S ribosomal protein L34
1667	 45.33	0	1826911..1827285	+	124	16330834	rnpA	slr1469	-	ribonuclease P
1668	 53.03	0	1827257..1827652	+	131	16330835	-	slr1470	-	hypothetical protein
1669	 48.23	0	1827753..1828907	+	384	16330836	-	slr1471	-	putative inner membrane protein translocase component YidC
1670	 49.49	0	1828997..1829491	+	164	16330837	-	slr1472	-	hypothetical protein
1671	 48.04	0	1829553..1830497	-	314	16330838	-	sll1384	-	hypothetical protein
1672	 51.50	0	1830628..1831491	-	287	16330839	suhB	sll1383	-	extragenic suppressor; SuhB
1673	 51.76	0	1831561..1831929	-	122	16330840	petF	sll1382	-	ferredoxin
1674	 46.17	0	1832360..1833169	+	269	16330841	-	slr1474	-	hypothetical protein
1675	 45.41	0	1833176..1833589	-	137	16330842	-	sll1381	-	hypothetical protein
1676	 51.94	0	1833655..1834299	-	214	16330843	-	sll1380	-	hypothetical protein
1677	 50.90	0	1834508..1835503	+	331	16330844	pyrB	slr1476	-	aspartate carbamoyltransferase catalytic subunit
1678	 50.50	0	1835747..1836649	-	300	16330845	-	sll1378	-	hypothetical protein
1679	 53.47	+1	1836691..1838130	-	479	16330846	-	sll1377	-	hypothetical protein
1680	 51.68	0	1838299..1839252	+	317	16330847	-	slr1478	-	hypothetical protein
1681	 50.12	0	1839259..1840491	-	410	16330848	-	sll1376	-	bifunctional sterol desaturase/short chain dehydrogenase
1682	 47.89	0	1841056..1842690	-	544	16330849	melB	sll1374	-	melibiose carrier protein
1683	 43.30	0	1842983..1843534	-	183	16330850	-	sll1373	-	hypothetical protein
1684	 46.98	0	1843610..1844437	-	275	16330851	-	sll1372	-	hypothetical protein
1685	 50.93	0	1844568..1845266	-	232	16330852	-	sll1371	-	catabolite gene activator protein
1686	 50.00	0	1845795..1846898	-	367	16330853	rfbM	sll1370	-	GDP-mannose pyrophosphorylase
1687	 53.83	+1	1846949..1848241	-	430	16330854	-	sll1369	-	hypothetical protein
1688	 51.74	0	1848301..1848702	-	133	16330855	petC	sll1182	-	cytochrome b6/f complex iron-sulfur subunit
1689	 50.46	0	1848799..1850550	-	583	16330856	hlyD	sll1181	-	HlyD family secretion protein
1690	 52.17	0	1850707..1853742	-	1011	16330857	hlyB	sll1180	-	HlyB family protein
1691	 51.94	0	1854102..1855982	+	626	16330858	rpoC1	slr1265	-	DNA-directed RNA polymerase subunit gamma
1692	 48.05	0	1856070..1857917	-	615	16330859	-	sll1178	-	nodulation protein
1693	 51.08	0	1858047..1858604	+	185	16330860	-	slr1266	-	hypothetical protein
1694	 50.76	0	1858609..1859790	+	393	16330861	mrdB	slr1267	-	rod-shape-determining protein
1695	 53.69	+1	1859816..1861372	+	518	16330862	ggt	slr1269	-	gamma-glutamyltranspeptidase
1696	 52.81	0	1861469..1863049	+	526	16330863	-	slr1270	-	hypothetical protein
1697	 52.36	0	1863247..1863987	+	246	16330864	rffM	slr1271	-	UDP-N-acetyl-D-mannosaminuronic acid transferase
1698	 52.42	0	1864239..1865003	+	254	16330865	-	slr1272	-	hypothetical protein
1699	 51.70	0	1865033..1865473	+	146	16330866	-	slr1273	-	hypothetical protein
1700	 50.36	0	1865658..1866761	+	367	16330867	pilM	slr1274	-	membrane protein
1701	 49.36	0	1866843..1867697	+	284	16330868	-	slr1275	-	hypothetical protein
1702	 47.83	0	1867737..1868564	+	275	16330869	-	slr1276	-	hypothetical protein
1703	 46.35	0	1868645..1871002	+	785	16330870	gspD	slr1277	-	general secretion pathway protein D
1704	 40.61	-1	1871011..1871835	-	274	16330871	-	sll1174	-	hypothetical protein
1705	 45.44	0	1871855..1872589	-	244	16330872	-	sll1173	-	hypothetical protein
1706	 47.63	0	1872656..1873648	+	330	16330873	-	slr1278	-	hypothetical protein
1707	 51.96	0	1873698..1874846	-	382	16330874	thrC	sll1172	-	threonine synthase
1708	 49.86	0	1875129..1875491	+	120	16330875	ndhC	slr1279	-	NADH dehydrogenase subunit A
1709	 53.28	+1	1875563..1876309	+	248	16330876	ndhK	slr1280	-	NADH dehydrogenase subunit B
1710	 51.48	0	1876302..1876841	+	179	16330877	ndhJ	slr1281	-	NADH dehydrogenase subunit J
1711	 37.22	-2	1877208..1877567	+	119	16330878	-	slr1282	-	transposase
1712	 36.50	-2	1877582..1878055	+	157	16330879	-	slr1283	-	transposase
1713	 40.97	-1	1878099..1879682	-	527	16330880	-	sll1170	-	hypothetical protein
1714	 44.63	0	1879983..1880699	-	238	16330881	-	sll1169	-	hypothetical protein
1715	 51.83	0	1881917..1883311	+	464	16330882	-	slr1285	-	sensory transduction histidine kinase
48.22	MEAN

4.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.