IslandPathversion 1.0

IslandPath Analysis: Synechocystis sp. PCC 6803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.22 STD DEV: 4.98
Synechocystis sp. PCC 6803, complete genome - 1..3573470
3172 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1568	 50.00	0	1719356..1719541	-	61	16330735	-	ssl1498	-	hypothetical protein
1569	 53.59	+1	1719644..1720576	-	310	16330736	-	sll1263	-	hypothetical protein
1570	 49.38	0	1720640..1721125	-	161	16330737	-	sll1262	-	hypothetical protein
1571	 49.32	0	1721350..1722006	-	218	16330738	tsf	sll1261	-	elongation factor Ts
1572	 51.73	0	1722160..1722969	-	269	16330739	rpsB	sll1260	-	30S ribosomal protein S2
1573	 52.01	0	1723452..1724570	+	372	16330740	-	slr1336	-	H+/Ca2+ exchanger
1574	 46.56	0	1724597..1725178	-	193	16330741	dcd	sll1258	-	deoxycytidine triphosphate deaminase
1575	 36.77	-2	1725431..1725925	-	164	16330742	-	sll1257	-	transposase
1576	 36.39	-2	1725919..1726278	-	119	16330743	-	sll1256	-	transposase
1577	 40.13	-1	1726697..1727299	+	200	16330744	-	slr1338	-	hypothetical protein
1578	 35.08	-2	1727283..1727741	+	152	16330745	-	slr1339	-	hypothetical protein
1579	 37.99	-2	1727770..1728306	+	178	16330746	-	slr1340	-	hypothetical protein
1580	 32.15	-2	1729012..1730028	-	338	16330747	-	sll1255	-	transposase
1581	 42.07	-1	1730166..1731206	-	346	16330748	-	sll1254	-	hemolysin
1582	 49.70	0	1731311..1732648	+	445	16330749	-	slr1342	-	hypothetical protein
1583	 45.41	0	1732809..1734323	+	504	16330750	-	slr1343	-	hypothetical protein
1584	 50.02	0	1734382..1737210	-	942	16330751	pcnB	sll1253	-	polyA polymerase
1585	 51.79	0	1737338..1738117	-	259	16330752	-	sll1252	-	hypothetical protein
1586	 50.47	0	1738184..1739035	+	283	16330753	-	slr1344	-	hypothetical protein
1587	 49.61	0	1739130..1740020	-	296	16330754	-	sll1251	-	hypothetical protein
1588	 41.36	-1	1740188..1740349	-	53	16330755	-	ssl2471	-	hypothetical protein
1589	 41.34	-1	1740388..1740774	-	128	16330756	-	sll1250	-	hypothetical protein
1590	 51.62	0	1740834..1742375	-	513	16330757	panC/kcy	sll1249	-	bifunctional pantoate ligase/cytidylate kinase
1591	 51.60	0	1742434..1743369	+	311	16330758	icfA	slr1347	-	carbonic anhydrase
1592	 51.07	0	1743443..1744192	+	249	16330759	cysE	slr1348	-	serine acetyltransferase
1593	 52.32	0	1744498..1746093	+	531	16330760	pgi	slr1349	-	glucose-6-phosphate isomerase
1594	 50.76	0	1746308..1747363	+	351	16330761	desA	slr1350	-	fatty acid desaturase
1595	 42.79	-1	1747520..1748893	-	457	16330762	-	sll1247	-	hypothetical protein
1596	 51.28	0	1749146..1750510	+	454	16330763	murF	slr1351	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino-pimelate-D-alanyl-D-alanine ligase
1597	 50.13	0	1750681..1751067	-	128	16330764	cytM	sll1245	-	cytochrome; CytM
1598	 51.20	0	1751311..1751769	-	152	161344758	rplI	sll1244	-	50S ribosomal protein L9
1599	 52.17	0	1751951..1752826	+	291	16330766	-	slr1353	-	hypothetical protein
1600	 49.78	0	1752891..1754501	-	536	16330767	-	sll1242	-	hypothetical protein
1601	 50.48	0	1754634..1755152	+	172	16330768	-	slr1956	-	hypothetical protein
1602	 46.11	0	1755592..1755912	+	106	16330769	-	slr1957	-	hypothetical protein
1603	 48.26	0	1755982..1756584	+	200	16330770	-	slr1958	-	hypothetical protein
1604	 45.71	0	1756594..1757223	-	209	16330771	act	sll1900	-	acetyltransferase
1605	 49.78	0	1757284..1757514	-	76	16330772	hypC	ssl3580	-	hydrogenase expression/formation protein; HypC
1606	 50.79	0	1757592..1758542	-	316	16330773	ctaB	sll1899	-	protoheme IX farnesyltransferase
1607	 54.15	+1	1758693..1759691	-	332	16330774	-	sll1898	-	hypothetical protein
1608	 39.69	-1	1759941..1762424	+	827	16330775	-	slr1959	-	hypothetical protein
1609	 50.00	0	1762454..1762879	-	141	16330776	-	sll1897	-	hypothetical protein
1610	 43.86	0	1763340..1763624	-	94	16330777	-	ssl3573	-	hypothetical protein
1611	 50.31	0	1763726..1764838	+	370	16330778	-	slr1962	-	hypothetical protein
1612	 43.52	0	1764835..1766925	-	696	16330779	-	sll1895	-	hypothetical protein
1613	 53.46	+1	1767270..1768223	+	317	16330780	-	slr1963	-	hypothetical protein
1614	 45.93	0	1768291..1768695	+	134	16330781	-	slr1964	-	hypothetical protein
1615	 52.24	0	1768748..1770418	-	556	16330782	ribA	sll1894	-	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein
1616	 51.91	0	1770690..1771421	+	243	16330783	-	slr1966	-	hypothetical protein
1617	 54.45	+1	1771458..1772243	-	261	16330784	hisF	sll1893	-	imidazole glycerol phosphate synthase subunit HisF
1618	 52.48	0	1772457..1773203	-	248	16330785	-	sll1892	-	hypothetical protein
1619	 48.88	0	1773346..1776150	+	934	16330786	-	slr1968	-	hypothetical protein
1620	 51.25	0	1776081..1776839	-	252	16330787	-	sll1891	-	hypothetical protein
1621	 53.69	+1	1776983..1777537	-	184	16330788	cobN	sll1890	-	CobN protein
1622	 48.25	0	1777729..1779981	+	750	16330789	-	slr1969	-	hybrid sensory kinase
1623	 52.11	0	1780086..1780298	+	70	16330790	-	ssr3341	-	hypothetical protein
1624	 50.96	0	1780484..1781005	+	173	16330791	-	slr1970	-	hypothetical protein
1625	 51.17	0	1781209..1782060	+	283	16330792	-	slr1971	-	hypothetical protein
1626	 50.50	0	1782057..1783355	-	432	16330793	-	sll1888	-	sensory transduction histidine kinase
1627	 48.48	0	1783442..1783672	-	76	16330794	-	ssl3549	-	hypothetical protein
1628	 49.63	0	1783855..1784934	+	359	16330795	-	slr1972	-	hypothetical protein
1629	 51.50	0	1784994..1785560	-	188	16330796	-	sll1886	-	hypothetical protein
1630	 45.94	0	1785835..1788372	-	845	16330797	-	sll1885	-	hypothetical protein
1631	 51.21	0	1788550..1789908	+	452	16330798	engA	slr1974	-	GTP-binding protein EngA
1632	 47.11	0	1790235..1791359	-	374	16330799	-	sll1884	-	hypothetical protein
1633	 55.79	+1	1791417..1792676	-	419	16330800	argJ	sll1883	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
1634	 51.03	0	1792784..1793608	-	274	16330801	-	sll1882	-	hypothetical protein
1635	 51.11	0	1793852..1795027	+	391	16330802	-	slr1975	-	renin-binding protein
1636	 48.87	0	1795121..1795564	-	147	16330803	-	sll1880	-	hypothetical protein
1637	 50.21	0	1795778..1797466	-	562	16330804	-	sll1879	-	hypothetical protein
1638	 52.39	0	1797552..1798658	-	368	16330805	-	sll1878	-	ABC transporter
1639	 52.79	0	1798804..1799538	+	244	16330806	-	slr1977	-	hypothetical protein
1640	 45.43	0	1799608..1800483	+	291	16330807	-	slr1978	-	hypothetical protein
1641	 44.10	0	1800387..1801844	+	485	16330808	trpE	slr1979	-	anthranilate synthase component I-like protein
1642	 38.70	-1	1801787..1802680	+	297	16330809	-	slr1980	-	hypothetical protein
1643	 41.68	-1	1802742..1804142	-	466	16330810	hemN	sll1876	-	coproporphyrinogen III oxidase
1644	 45.02	0	1804403..1805155	-	250	16330811	ho2	sll1875	-	heme oxygenase
1645	 45.03	0	1805220..1806296	-	358	16330812	AT103	sll1874	-	magnesium-protoporphyrin IX monomethyl ester cyclase
1646	 51.09	0	1806871..1807236	-	121	16330813	-	sll1873	-	hypothetical protein
1647	 51.15	0	1807333..1808724	-	463	16330814	lytR	sll1872	-	membrane bound protein; LytR
1648	 37.23	-2	1808922..1810946	-	674	16330815	-	sll1871	-	sensory transduction histidine kinase
1649	 49.73	0	1811130..1811501	+	123	16330816	-	slr1982	-	CheY family protein
1650	 40.12	-1	1811746..1813557	+	603	16330817	-	slr1983	-	regulatory components of sensory transduction system
1651	 40.53	-1	1813554..1814234	-	226	16330818	-	sll1870	-	ABC transporter
1652	 46.65	0	1814231..1815304	-	357	16330819	cbaB	sll1869	-	3-chlorobenzoate-3,4-dioxygenase
1653	 49.35	0	1815454..1816371	+	305	16330820	rps1	slr1984	-	30S ribosomal protein S1
1654	 43.19	-1	1816855..1818762	-	635	16330821	dnaG	sll1868	-	DNA primase
1655	 51.25	0	1818915..1819997	-	360	16330822	psbA3	sll1867	-	photosystem II D1 protein
1656	 53.17	0	1820238..1820837	-	199	16330823	-	sll1866	-	hypothetical protein
1657	 50.53	0	1820889..1821638	-	249	16330824	-	sll1390	-	hypothetical protein
1658	 47.89	0	1821824..1822036	-	70	16330825	-	ssl2717	-	hypothetical protein
1659	 50.09	0	1822054..1822620	-	188	16330826	-	sll1389	-	hypothetical protein
1660	 49.68	0	1822666..1823130	-	154	16330827	-	sll1388	-	hypothetical protein
1661	 51.28	0	1823570..1823686	+	38	16330828	petG	smr0010	-	cytochrome b6-f complex subunit PetG
1662	 52.16	0	1823968..1824732	-	254	16330829	-	sll1387	-	hypothetical protein
1663	 49.42	0	1824953..1825468	-	171	16330830	-	sll1386	-	hypothetical protein
1664	 52.02	0	1825558..1826226	+	222	16330831	-	slr1467	-	precorrin-8X methylmutase
1665	 50.44	0	1826259..1826708	+	149	16330832	-	slr1468	-	tymocyte protein cThy28kD
1666	 55.80	+1	1826764..1826901	+	45	16330833	rpmH	smr0011	-	50S ribosomal protein L34
1667	 45.33	0	1826911..1827285	+	124	16330834	rnpA	slr1469	-	ribonuclease P
48.22	MEAN

4.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.