IslandPathversion 1.0

IslandPath Analysis: Synechocystis sp. PCC 6803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.22 STD DEV: 4.98
Synechocystis sp. PCC 6803, complete genome - 1..3573470
3172 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1509	 41.67	-1	1662306..1663505	-	399	16330676	mtfB	sll1231	-	mannosyltransferase B
1510	 49.78	0	1663554..1664690	-	378	16330677	-	sll1229	-	hybrid sensory kinase
1511	 51.31	0	1664798..1666699	-	633	16330678	-	sll1228	-	hybrid sensory kinase
1512	 52.89	0	1666932..1668383	+	483	16330679	atpB	slr1329	-	F0F1 ATP synthase subunit beta
1513	 53.77	+1	1668531..1668941	+	136	161344760	atpC	slr1330	-	F0F1 ATP synthase subunit epsilon
1514	 51.23	0	1669101..1670642	+	513	16330681	ymxG	slr1331	-	processing protease
1515	 52.51	0	1670650..1671864	+	404	16330682	fabF	slr1332	-	3-oxoacyl-(acyl carrier protein) synthase II
1516	 45.61	0	1672071..1673495	-	474	16330683	hoxH	sll1226	-	hydrogenase large subunit
1517	 34.44	-2	1673585..1674034	-	149	16330684	-	sll1225	-	hypothetical protein
1518	 37.25	-2	1674044..1674298	-	84	16330685	-	ssl2420	-	hypothetical protein
1519	 47.72	0	1674350..1674898	-	182	16330686	hoxY	sll1224	-	hydrogenase small subunit
1520	 46.72	0	1674944..1675660	-	238	16330687	hoxU	sll1223	-	bidirectional hydrogenase complex protein HoxU
1521	 38.81	-1	1675687..1676325	-	212	16330688	-	sll1222	-	hypothetical protein
1522	 49.69	0	1676366..1677967	-	533	16330689	hoxF	sll1221	-	hydrogenase subunit
1523	 51.72	0	1678044..1678565	-	173	16330690	-	sll1220	-	bidirectional hydrogenase complex protein HoxE
1524	 41.32	-1	1679517..1679804	+	95	16330691	-	ssr2227	-	transposase
1525	 50.78	0	1680662..1682134	+	490	16330692	-	slr1334	-	hypothetical protein
1526	 56.57	+1	1682001..1682327	-	108	16330693	-	sll1219	-	hypothetical protein
1527	 49.09	0	1682870..1683529	-	219	16330694	ycf39	sll1218	-	hypothetical protein
1528	 47.49	0	1683583..1684260	-	225	16330695	-	sll1217	-	hypothetical protein
1529	 55.90	+1	1684497..1684691	+	64	16330696	-	ssr1375	-	hypothetical protein
1530	 53.33	+1	1684928..1685872	+	314	16330697	dacB	slr0804	-	D-alanyl-D-alanine carboxypeptidase
1531	 49.09	0	1685899..1687218	+	439	16330698	-	slr0806	-	hypothetical protein
1532	 42.28	-1	1687326..1687448	-	40	16330699	psaJ	sml0008	-	photosystem I reaction center subunit IX
1533	 49.40	0	1687556..1688053	-	165	16330700	psaF	sll0819	-	photosystem I subunit III
1534	 50.05	0	1688213..1689259	+	348	16330701	gcp	slr0807	-	O-sialoglycoprotein endopeptidase
1535	 47.31	0	1689313..1689870	+	185	16330702	rimM	slr0808	-	16S rRNA-processing protein
1536	 48.53	0	1689948..1690934	+	328	16330703	rfbB	slr0809	-	dTDP-glucose 4-6-dehydratase
1537	 43.61	0	1691083..1691442	+	119	16330704	-	slr0810	-	hypothetical protein
1538	 48.57	0	1691493..1692332	-	279	16330705	-	sll0818	-	hypothetical protein
1539	 46.93	0	1692332..1692559	-	75	16330706	-	ssl1520	-	hypothetical protein
1540	 48.68	0	1692627..1693538	-	303	16330707	miaA	sll0817	-	tRNA delta(2)-isopentenylpyrophosphate transferase
1541	 50.00	0	1693546..1694661	-	371	16330708	-	sll0816	-	hypothetical protein
1542	 38.24	-2	1694717..1695511	-	264	16330709	-	sll0815	-	hypothetical protein
1543	 50.66	0	1695886..1696797	-	303	16330710	-	sll0814	-	hypothetical protein
1544	 51.05	0	1697011..1697913	-	300	16330711	ctaC	sll0813	-	cytochrome c oxidase subunit II
1545	 51.42	0	1697993..1698766	+	257	16330712	-	slr0812	-	pantothenate kinase
1546	 48.46	0	1698811..1699980	+	389	16330713	-	slr0813	-	ceramide glucosyltransferase
1547	 50.43	0	1699970..1700431	-	153	16330714	-	sll0812	-	hypothetical protein
1548	 44.86	0	1700893..1701135	+	80	16330715	ndhL	ssr1386	-	NADH dehydrogenase subunit; NdhL
1549	 48.63	0	1701192..1701557	+	121	16330716	-	slr0815	-	hypothetical protein
1550	 50.60	0	1701615..1702118	+	167	16330717	-	slr0816	-	hypothetical protein
1551	 46.67	0	1702300..1702644	-	114	16330718	-	sll0811	-	hypothetical protein
1552	 42.42	-1	1702666..1703226	-	186	16330719	-	sll0810	-	hypothetical protein
1553	 52.68	0	1703426..1704097	-	223	16330720	-	sll0809	-	hypothetical protein
1554	 51.65	0	1704375..1705799	+	474	16330721	entC	slr0817	-	menaquinone-specific isochorismate synthase
1555	 50.37	0	1705868..1707223	+	451	16330722	-	slr0818	-	hypothetical protein
1556	 46.62	0	1707266..1708876	+	536	161344759	lnt	slr0819	-	apolipoprotein N-acyltransferase
1557	 44.68	0	1708873..1709154	+	93	16330724	-	ssr1391	-	hypothetical protein
1558	 49.27	0	1709232..1710668	+	478	16330725	-	slr0820	-	glucosyltransferase
1559	 38.31	-1	1710814..1711014	-	66	16330726	-	ssl1507	-	transposase
1560	 36.68	-2	1711093..1711659	-	188	16330727	-	sll0808	-	transposase
1561	 50.30	0	1712080..1712409	+	109	16330728	-	slr0821	-	hypothetical protein
1562	 51.52	0	1712564..1713256	-	230	16330729	cfxE	sll0807	-	ribulose-phosphate 3-epimerase
1563	 51.92	0	1713409..1716270	+	953	16330730	-	slr0822	-	cation-transporting ATPase; E1-E2 ATPase
1564	 46.55	0	1716379..1716900	+	173	16330731	ycf3	slr0823	-	photosystem I assembly protein Ycf3
1565	 51.03	0	1716932..1718293	-	453	16330732	-	sll0804	-	hypothetical protein
1566	 43.75	0	1718310..1718789	-	159	16330733	-	sll0803	-	hypothetical protein
1567	 43.47	0	1718820..1719263	-	147	16330734	-	sll0802	-	hypothetical protein
1568	 50.00	0	1719356..1719541	-	61	16330735	-	ssl1498	-	hypothetical protein
1569	 53.59	+1	1719644..1720576	-	310	16330736	-	sll1263	-	hypothetical protein
1570	 49.38	0	1720640..1721125	-	161	16330737	-	sll1262	-	hypothetical protein
1571	 49.32	0	1721350..1722006	-	218	16330738	tsf	sll1261	-	elongation factor Ts
1572	 51.73	0	1722160..1722969	-	269	16330739	rpsB	sll1260	-	30S ribosomal protein S2
1573	 52.01	0	1723452..1724570	+	372	16330740	-	slr1336	-	H+/Ca2+ exchanger
1574	 46.56	0	1724597..1725178	-	193	16330741	dcd	sll1258	-	deoxycytidine triphosphate deaminase
1575	 36.77	-2	1725431..1725925	-	164	16330742	-	sll1257	-	transposase
1576	 36.39	-2	1725919..1726278	-	119	16330743	-	sll1256	-	transposase
1577	 40.13	-1	1726697..1727299	+	200	16330744	-	slr1338	-	hypothetical protein
1578	 35.08	-2	1727283..1727741	+	152	16330745	-	slr1339	-	hypothetical protein
1579	 37.99	-2	1727770..1728306	+	178	16330746	-	slr1340	-	hypothetical protein
1580	 32.15	-2	1729012..1730028	-	338	16330747	-	sll1255	-	transposase
1581	 42.07	-1	1730166..1731206	-	346	16330748	-	sll1254	-	hemolysin
1582	 49.70	0	1731311..1732648	+	445	16330749	-	slr1342	-	hypothetical protein
1583	 45.41	0	1732809..1734323	+	504	16330750	-	slr1343	-	hypothetical protein
1584	 50.02	0	1734382..1737210	-	942	16330751	pcnB	sll1253	-	polyA polymerase
1585	 51.79	0	1737338..1738117	-	259	16330752	-	sll1252	-	hypothetical protein
1586	 50.47	0	1738184..1739035	+	283	16330753	-	slr1344	-	hypothetical protein
1587	 49.61	0	1739130..1740020	-	296	16330754	-	sll1251	-	hypothetical protein
1588	 41.36	-1	1740188..1740349	-	53	16330755	-	ssl2471	-	hypothetical protein
1589	 41.34	-1	1740388..1740774	-	128	16330756	-	sll1250	-	hypothetical protein
1590	 51.62	0	1740834..1742375	-	513	16330757	panC/kcy	sll1249	-	bifunctional pantoate ligase/cytidylate kinase
1591	 51.60	0	1742434..1743369	+	311	16330758	icfA	slr1347	-	carbonic anhydrase
1592	 51.07	0	1743443..1744192	+	249	16330759	cysE	slr1348	-	serine acetyltransferase
1593	 52.32	0	1744498..1746093	+	531	16330760	pgi	slr1349	-	glucose-6-phosphate isomerase
1594	 50.76	0	1746308..1747363	+	351	16330761	desA	slr1350	-	fatty acid desaturase
1595	 42.79	-1	1747520..1748893	-	457	16330762	-	sll1247	-	hypothetical protein
1596	 51.28	0	1749146..1750510	+	454	16330763	murF	slr1351	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino-pimelate-D-alanyl-D-alanine ligase
1597	 50.13	0	1750681..1751067	-	128	16330764	cytM	sll1245	-	cytochrome; CytM
1598	 51.20	0	1751311..1751769	-	152	161344758	rplI	sll1244	-	50S ribosomal protein L9
1599	 52.17	0	1751951..1752826	+	291	16330766	-	slr1353	-	hypothetical protein
1600	 49.78	0	1752891..1754501	-	536	16330767	-	sll1242	-	hypothetical protein
1601	 50.48	0	1754634..1755152	+	172	16330768	-	slr1956	-	hypothetical protein
1602	 46.11	0	1755592..1755912	+	106	16330769	-	slr1957	-	hypothetical protein
1603	 48.26	0	1755982..1756584	+	200	16330770	-	slr1958	-	hypothetical protein
1604	 45.71	0	1756594..1757223	-	209	16330771	act	sll1900	-	acetyltransferase
1605	 49.78	0	1757284..1757514	-	76	16330772	hypC	ssl3580	-	hydrogenase expression/formation protein; HypC
1606	 50.79	0	1757592..1758542	-	316	16330773	ctaB	sll1899	-	protoheme IX farnesyltransferase
1607	 54.15	+1	1758693..1759691	-	332	16330774	-	sll1898	-	hypothetical protein
1608	 39.69	-1	1759941..1762424	+	827	16330775	-	slr1959	-	hypothetical protein
48.22	MEAN

4.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.