IslandPathversion 1.0

IslandPath Analysis: Synechocystis sp. PCC 6803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.22 STD DEV: 4.98
Synechocystis sp. PCC 6803, complete genome - 1..3573470
3172 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1452	 52.71	0	1608232..1609320	+	362	16330620	leuB	slr1517	-	3-isopropylmalate dehydrogenase
1453	 51.69	0	1609539..1609805	+	88	16330621	-	ssr2554	-	hypothetical protein
1454	 50.43	0	1609826..1610749	+	307	16330622	menA	slr1518	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
1455	 52.17	0	1610727..1611464	+	245	16330623	hglK	slr1519	-	HglK
1456	 48.67	0	1611574..1612629	+	351	16330624	-	slr1520	-	hypothetical protein
1457	 53.83	+1	1612797..1614401	+	534	16330625	hflX	slr1521	-	GTP-binding protein; HflX
1458	 35.10	-2	1614572..1615648	+	358	16330626	-	slr1522	-	transposase
1459	 36.06	-2	1615869..1616528	+	219	16330627	-	slr1523	-	transposase
1460	 36.24	-2	1616904..1617419	+	171	16330628	-	slr1524	-	transposase
1461	 42.01	-1	1617376..1617813	-	145	16330629	-	sll1411	-	hypothetical protein
1462	 45.36	0	1617806..1618096	-	96	16330630	-	ssl2749	-	hypothetical protein
1463	 50.69	0	1618127..1619653	-	508	16330631	lap	sll2001	-	leucyl aminopeptidase
1464	 52.15	0	1620037..1620222	+	61	16330632	-	ssr3570	-	hypothetical protein
1465	 35.23	-2	1620276..1620539	+	87	16330633	-	ssr3571	-	hypothetical protein
1466	 50.17	0	1620973..1621881	+	302	16330634	kpsM	slr2107	-	polysialic acid transport protein; KpsM
1467	 45.34	0	1621978..1623093	+	371	16330635	kpsT	slr2108	-	polysialic acid transport ATP-binding protein; KpsT
1468	 29.48	-2	1623130..1623648	-	172	16330636	-	sll1999	-	transposase
1469	 36.63	-2	1623723..1624571	-	282	16330637	-	sll1998	-	transposase
1470	 34.19	-2	1624628..1625095	-	155	16330638	-	sll1997	-	transposase
1471	 28.95	-2	1625291..1625632	+	113	16330639	-	slr2110	-	hypothetical protein
1472	 45.36	0	1625622..1626095	+	157	16330640	-	slr2111	-	hypothetical protein
1473	 36.11	-2	1626165..1626524	+	119	16330641	-	slr2112	-	transposase
1474	 36.77	-2	1626518..1627012	+	164	16330642	-	slr2113	-	transposase
1475	 38.44	-1	1626981..1628018	+	345	16330643	spsC	slr2114	-	spore coat polysaccharide biosynthesis protein; SpsC
1476	 31.55	-2	1628039..1629607	+	522	16330644	-	slr2115	-	hypothetical protein
1477	 30.57	-2	1629604..1630434	+	276	16330645	spsA	slr2116	-	spore coat polysaccharide biosynthesis protein; SpsA
1478	 30.40	-2	1630460..1631005	+	181	16330646	-	slr2117	-	hypothetical protein
1479	 32.86	-2	1631265..1632530	+	421	16330647	-	slr2118	-	hypothetical protein
1480	 40.86	-1	1632538..1633374	+	278	16330648	-	slr2119	-	hypothetical protein
1481	 51.16	0	1633422..1634414	+	330	16330649	-	slr2120	-	hypothetical protein
1482	 52.93	0	1634411..1635058	+	215	16330650	-	slr2121	-	hypothetical protein
1483	 45.72	0	1635072..1635749	+	225	16330651	-	slr2122	-	hypothetical protein
1484	 48.69	0	1635746..1636702	+	318	16330652	-	slr2123	-	D-isomer specific 2-hydroxyacid dehydrogenase family protein
1485	 50.40	0	1636705..1637454	+	249	16330653	-	slr2124	-	short-chain alcohol dehydrogenase family protein
1486	 36.98	-2	1637476..1638270	+	264	16330654	-	slr2125	-	hypothetical protein
1487	 33.56	-2	1638381..1639247	+	288	16330655	-	slr2126	-	hypothetical protein
1488	 47.92	0	1639944..1640519	+	191	16330656	-	slr2127	-	hypothetical protein
1489	 39.74	-1	1640786..1641238	+	150	16330657	-	slr2128	-	hypothetical protein
1490	 48.82	0	1641278..1642207	-	309	16330658	-	sll1995	-	hypothetical protein
1491	 50.81	0	1642288..1643271	-	327	16330659	hemB	sll1994	-	delta-aminolevulinic acid dehydratase
1492	 46.46	0	1643502..1643600	-	32	109150014	petL	sll1994a	-	cytochrome b6f complex subunit PetL
1493	 50.74	0	1643682..1644767	+	361	16330660	aroB	slr2130	-	3-dehydroquinate synthase
1494	 50.44	0	1644905..1648090	+	1061	16330661	-	slr2131	-	cation or drug efflux system protein
1495	 33.07	-2	1648681..1649439	-	252	16330662	-	sll1241	-	hypothetical protein
1496	 28.90	-2	1649441..1649914	-	157	16330663	-	sll1240	-	hypothetical protein
1497	 31.10	-2	1649907..1650443	-	178	16330664	-	sll1239	-	hypothetical protein
1498	 51.90	0	1650889..1652358	+	489	16330665	-	slr1322	-	hypothetical protein
1499	 51.22	0	1652397..1653296	-	299	16330666	hemK	sll1237	-	protoporphyrinogen oxidase
1500	 49.56	0	1653402..1654664	+	420	16330667	-	slr1324	-	hybrid sensory kinase
1501	 47.47	0	1654943..1655140	+	65	16330668	-	ssr2194	-	hypothetical protein
1502	 52.08	0	1655289..1655672	-	127	16330669	-	sll1236	-	hypothetical protein
1503	 49.85	0	1656043..1658325	+	760	16330670	spoT	slr1325	-	(p)ppGpp 3'-pyrophosphohydrolase
1504	 53.36	+1	1658511..1659788	-	425	16330671	ahcY	sll1234	-	S-adenosyl-L-homocysteine hydrolase
1505	 32.88	-2	1660069..1660287	+	72	16330672	-	ssr2201	-	hypothetical protein
1506	 33.79	-2	1660277..1660711	+	144	16330673	-	slr1327	-	hypothetical protein
1507	 51.30	0	1660739..1661623	-	294	16330674	-	sll1233	-	hypothetical protein
1508	 40.07	-1	1661722..1662285	-	187	16330675	-	sll1232	-	hypothetical protein
1509	 41.67	-1	1662306..1663505	-	399	16330676	mtfB	sll1231	-	mannosyltransferase B
1510	 49.78	0	1663554..1664690	-	378	16330677	-	sll1229	-	hybrid sensory kinase
1511	 51.31	0	1664798..1666699	-	633	16330678	-	sll1228	-	hybrid sensory kinase
1512	 52.89	0	1666932..1668383	+	483	16330679	atpB	slr1329	-	F0F1 ATP synthase subunit beta
1513	 53.77	+1	1668531..1668941	+	136	161344760	atpC	slr1330	-	F0F1 ATP synthase subunit epsilon
1514	 51.23	0	1669101..1670642	+	513	16330681	ymxG	slr1331	-	processing protease
1515	 52.51	0	1670650..1671864	+	404	16330682	fabF	slr1332	-	3-oxoacyl-(acyl carrier protein) synthase II
1516	 45.61	0	1672071..1673495	-	474	16330683	hoxH	sll1226	-	hydrogenase large subunit
1517	 34.44	-2	1673585..1674034	-	149	16330684	-	sll1225	-	hypothetical protein
1518	 37.25	-2	1674044..1674298	-	84	16330685	-	ssl2420	-	hypothetical protein
1519	 47.72	0	1674350..1674898	-	182	16330686	hoxY	sll1224	-	hydrogenase small subunit
1520	 46.72	0	1674944..1675660	-	238	16330687	hoxU	sll1223	-	bidirectional hydrogenase complex protein HoxU
1521	 38.81	-1	1675687..1676325	-	212	16330688	-	sll1222	-	hypothetical protein
1522	 49.69	0	1676366..1677967	-	533	16330689	hoxF	sll1221	-	hydrogenase subunit
1523	 51.72	0	1678044..1678565	-	173	16330690	-	sll1220	-	bidirectional hydrogenase complex protein HoxE
1524	 41.32	-1	1679517..1679804	+	95	16330691	-	ssr2227	-	transposase
1525	 50.78	0	1680662..1682134	+	490	16330692	-	slr1334	-	hypothetical protein
1526	 56.57	+1	1682001..1682327	-	108	16330693	-	sll1219	-	hypothetical protein
1527	 49.09	0	1682870..1683529	-	219	16330694	ycf39	sll1218	-	hypothetical protein
1528	 47.49	0	1683583..1684260	-	225	16330695	-	sll1217	-	hypothetical protein
1529	 55.90	+1	1684497..1684691	+	64	16330696	-	ssr1375	-	hypothetical protein
1530	 53.33	+1	1684928..1685872	+	314	16330697	dacB	slr0804	-	D-alanyl-D-alanine carboxypeptidase
1531	 49.09	0	1685899..1687218	+	439	16330698	-	slr0806	-	hypothetical protein
1532	 42.28	-1	1687326..1687448	-	40	16330699	psaJ	sml0008	-	photosystem I reaction center subunit IX
1533	 49.40	0	1687556..1688053	-	165	16330700	psaF	sll0819	-	photosystem I subunit III
1534	 50.05	0	1688213..1689259	+	348	16330701	gcp	slr0807	-	O-sialoglycoprotein endopeptidase
1535	 47.31	0	1689313..1689870	+	185	16330702	rimM	slr0808	-	16S rRNA-processing protein
1536	 48.53	0	1689948..1690934	+	328	16330703	rfbB	slr0809	-	dTDP-glucose 4-6-dehydratase
1537	 43.61	0	1691083..1691442	+	119	16330704	-	slr0810	-	hypothetical protein
1538	 48.57	0	1691493..1692332	-	279	16330705	-	sll0818	-	hypothetical protein
1539	 46.93	0	1692332..1692559	-	75	16330706	-	ssl1520	-	hypothetical protein
1540	 48.68	0	1692627..1693538	-	303	16330707	miaA	sll0817	-	tRNA delta(2)-isopentenylpyrophosphate transferase
1541	 50.00	0	1693546..1694661	-	371	16330708	-	sll0816	-	hypothetical protein
1542	 38.24	-2	1694717..1695511	-	264	16330709	-	sll0815	-	hypothetical protein
1543	 50.66	0	1695886..1696797	-	303	16330710	-	sll0814	-	hypothetical protein
1544	 51.05	0	1697011..1697913	-	300	16330711	ctaC	sll0813	-	cytochrome c oxidase subunit II
1545	 51.42	0	1697993..1698766	+	257	16330712	-	slr0812	-	pantothenate kinase
1546	 48.46	0	1698811..1699980	+	389	16330713	-	slr0813	-	ceramide glucosyltransferase
1547	 50.43	0	1699970..1700431	-	153	16330714	-	sll0812	-	hypothetical protein
1548	 44.86	0	1700893..1701135	+	80	16330715	ndhL	ssr1386	-	NADH dehydrogenase subunit; NdhL
1549	 48.63	0	1701192..1701557	+	121	16330716	-	slr0815	-	hypothetical protein
1550	 50.60	0	1701615..1702118	+	167	16330717	-	slr0816	-	hypothetical protein
1551	 46.67	0	1702300..1702644	-	114	16330718	-	sll0811	-	hypothetical protein
48.22	MEAN

4.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.