IslandPathversion 1.0

IslandPath Analysis: Synechocystis sp. PCC 6803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.22 STD DEV: 4.98
Synechocystis sp. PCC 6803, complete genome - 1..3573470
3172 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1415	 49.33	0	1562468..1562842	+	124	16330583	glbN	slr2097	-	cyanoglobin
1416	 50.29	0	1563115..1566900	+	1261	16330584	-	slr2098	-	hybrid sensory kinase
1417	 48.68	0	1566990..1568090	+	366	16330585	-	slr2099	-	hybrid sensory kinase
1418	 47.70	0	1568317..1569423	+	368	16330586	-	slr2100	-	regulatory components of sensory transduction system
1419	 50.46	0	1569588..1570019	+	143	16330587	-	slr2101	-	hypothetical protein
1420	 53.73	+1	1570209..1571723	+	504	16330588	ftsY	slr2102	-	cell division protein; FtsY
1421	 51.41	0	1571731..1572615	+	294	16330589	-	slr2103	-	hypothetical protein
1422	 47.95	0	1572849..1575701	+	950	16330590	-	slr2104	-	hybrid sensory kinase
1423	 51.87	0	1575924..1576592	-	222	16330591	-	sll1973	-	hypothetical protein
1424	 51.23	0	1576765..1578552	+	595	16330592	-	slr2105	-	hypothetical protein
1425	 47.98	0	1578725..1579243	-	172	16330593	apt	sll1430	-	adenine phosphoribosyltransferase
1426	 29.51	-2	1579624..1580538	-	304	16330594	-	sll1429	-	hypothetical protein
1427	 45.37	0	1580586..1580801	-	71	16330595	-	ssl2789	-	resolvase
1428	 42.09	-1	1580932..1581810	-	292	16330596	-	sll1428	-	P3 protein
1429	 51.06	0	1582206..1583198	+	330	16330597	-	slr1503	-	hypothetical protein
1430	 54.36	+1	1583249..1584499	-	416	16330598	hhoB	sll1427	-	protease; HhoB
1431	 48.20	0	1584613..1585083	-	156	16330599	-	sll1426	-	hypothetical protein
1432	 50.17	0	1585209..1587020	-	603	161344762	proS	sll1425	-	prolyl-tRNA synthetase
1433	 50.42	0	1587231..1587827	+	198	16330601	-	slr1505	-	hypothetical protein
1434	 49.32	0	1587899..1589374	-	491	16330602	-	sll1424	-	hypothetical protein
1435	 50.00	0	1589384..1590061	-	225	16330603	ntcA	sll1423	-	global nitrogen regulator
1436	 47.39	0	1590134..1590382	-	82	16330604	-	ssl2781	-	hypothetical protein
1437	 50.56	0	1590496..1592364	+	622	16330605	-	slr1506	-	hypothetical protein
1438	 50.05	0	1592918..1594000	+	360	16330606	-	slr1507	-	hypothetical protein
1439	 51.28	0	1594119..1595288	+	389	16330607	-	slr1508	-	hypothetical protein
1440	 48.69	0	1595285..1596619	+	444	16330608	ntpJ	slr1509	-	Na+ -ATPase subunit J
1441	 50.53	0	1596795..1597841	+	348	16330609	plsX	slr1510	-	putative glycerol-3-phosphate acyltransferase PlsX
1442	 53.17	0	1597936..1598928	+	330	161344761	fabH	slr1511	-	3-oxoacyl-(acyl carrier protein) synthase III
1443	 50.62	0	1598972..1599538	-	188	16330611	-	sll1418	-	hypothetical protein
1444	 49.33	0	1600659..1601783	+	374	16330612	-	slr1512	-	hypothetical protein
1445	 45.35	0	1601869..1602201	+	110	16330613	-	slr1513	-	hypothetical protein
1446	 51.95	0	1602482..1603405	-	307	16330614	ppnK	sll1415	-	inorganic polyphosphate/ATP-NAD kinase
1447	 49.38	0	1603437..1604159	-	240	16330615	-	sll1414	-	Thf1-like protein
1448	 47.95	0	1604293..1604463	+	56	16330616	-	ssr2549	-	hypothetical protein
1449	 52.84	0	1604863..1606287	+	474	16330617	-	slr1515	-	hypothetical protein
1450	 54.74	+1	1606361..1606645	+	94	16330618	-	ssr2551	-	hypothetical protein
1451	 50.17	0	1607353..1607952	+	199	16330619	sodB	slr1516	-	superoxide dismutase
1452	 52.71	0	1608232..1609320	+	362	16330620	leuB	slr1517	-	3-isopropylmalate dehydrogenase
1453	 51.69	0	1609539..1609805	+	88	16330621	-	ssr2554	-	hypothetical protein
1454	 50.43	0	1609826..1610749	+	307	16330622	menA	slr1518	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
1455	 52.17	0	1610727..1611464	+	245	16330623	hglK	slr1519	-	HglK
1456	 48.67	0	1611574..1612629	+	351	16330624	-	slr1520	-	hypothetical protein
1457	 53.83	+1	1612797..1614401	+	534	16330625	hflX	slr1521	-	GTP-binding protein; HflX
1458	 35.10	-2	1614572..1615648	+	358	16330626	-	slr1522	-	transposase
1459	 36.06	-2	1615869..1616528	+	219	16330627	-	slr1523	-	transposase
1460	 36.24	-2	1616904..1617419	+	171	16330628	-	slr1524	-	transposase
1461	 42.01	-1	1617376..1617813	-	145	16330629	-	sll1411	-	hypothetical protein
1462	 45.36	0	1617806..1618096	-	96	16330630	-	ssl2749	-	hypothetical protein
1463	 50.69	0	1618127..1619653	-	508	16330631	lap	sll2001	-	leucyl aminopeptidase
1464	 52.15	0	1620037..1620222	+	61	16330632	-	ssr3570	-	hypothetical protein
1465	 35.23	-2	1620276..1620539	+	87	16330633	-	ssr3571	-	hypothetical protein
1466	 50.17	0	1620973..1621881	+	302	16330634	kpsM	slr2107	-	polysialic acid transport protein; KpsM
1467	 45.34	0	1621978..1623093	+	371	16330635	kpsT	slr2108	-	polysialic acid transport ATP-binding protein; KpsT
1468	 29.48	-2	1623130..1623648	-	172	16330636	-	sll1999	-	transposase
1469	 36.63	-2	1623723..1624571	-	282	16330637	-	sll1998	-	transposase
1470	 34.19	-2	1624628..1625095	-	155	16330638	-	sll1997	-	transposase
1471	 28.95	-2	1625291..1625632	+	113	16330639	-	slr2110	-	hypothetical protein
1472	 45.36	0	1625622..1626095	+	157	16330640	-	slr2111	-	hypothetical protein
1473	 36.11	-2	1626165..1626524	+	119	16330641	-	slr2112	-	transposase
1474	 36.77	-2	1626518..1627012	+	164	16330642	-	slr2113	-	transposase
1475	 38.44	-1	1626981..1628018	+	345	16330643	spsC	slr2114	-	spore coat polysaccharide biosynthesis protein; SpsC
1476	 31.55	-2	1628039..1629607	+	522	16330644	-	slr2115	-	hypothetical protein
1477	 30.57	-2	1629604..1630434	+	276	16330645	spsA	slr2116	-	spore coat polysaccharide biosynthesis protein; SpsA
1478	 30.40	-2	1630460..1631005	+	181	16330646	-	slr2117	-	hypothetical protein
1479	 32.86	-2	1631265..1632530	+	421	16330647	-	slr2118	-	hypothetical protein
1480	 40.86	-1	1632538..1633374	+	278	16330648	-	slr2119	-	hypothetical protein
1481	 51.16	0	1633422..1634414	+	330	16330649	-	slr2120	-	hypothetical protein
1482	 52.93	0	1634411..1635058	+	215	16330650	-	slr2121	-	hypothetical protein
1483	 45.72	0	1635072..1635749	+	225	16330651	-	slr2122	-	hypothetical protein
1484	 48.69	0	1635746..1636702	+	318	16330652	-	slr2123	-	D-isomer specific 2-hydroxyacid dehydrogenase family protein
1485	 50.40	0	1636705..1637454	+	249	16330653	-	slr2124	-	short-chain alcohol dehydrogenase family protein
1486	 36.98	-2	1637476..1638270	+	264	16330654	-	slr2125	-	hypothetical protein
1487	 33.56	-2	1638381..1639247	+	288	16330655	-	slr2126	-	hypothetical protein
1488	 47.92	0	1639944..1640519	+	191	16330656	-	slr2127	-	hypothetical protein
1489	 39.74	-1	1640786..1641238	+	150	16330657	-	slr2128	-	hypothetical protein
1490	 48.82	0	1641278..1642207	-	309	16330658	-	sll1995	-	hypothetical protein
1491	 50.81	0	1642288..1643271	-	327	16330659	hemB	sll1994	-	delta-aminolevulinic acid dehydratase
1492	 46.46	0	1643502..1643600	-	32	109150014	petL	sll1994a	-	cytochrome b6f complex subunit PetL
1493	 50.74	0	1643682..1644767	+	361	16330660	aroB	slr2130	-	3-dehydroquinate synthase
1494	 50.44	0	1644905..1648090	+	1061	16330661	-	slr2131	-	cation or drug efflux system protein
1495	 33.07	-2	1648681..1649439	-	252	16330662	-	sll1241	-	hypothetical protein
1496	 28.90	-2	1649441..1649914	-	157	16330663	-	sll1240	-	hypothetical protein
1497	 31.10	-2	1649907..1650443	-	178	16330664	-	sll1239	-	hypothetical protein
1498	 51.90	0	1650889..1652358	+	489	16330665	-	slr1322	-	hypothetical protein
1499	 51.22	0	1652397..1653296	-	299	16330666	hemK	sll1237	-	protoporphyrinogen oxidase
1500	 49.56	0	1653402..1654664	+	420	16330667	-	slr1324	-	hybrid sensory kinase
1501	 47.47	0	1654943..1655140	+	65	16330668	-	ssr2194	-	hypothetical protein
1502	 52.08	0	1655289..1655672	-	127	16330669	-	sll1236	-	hypothetical protein
1503	 49.85	0	1656043..1658325	+	760	16330670	spoT	slr1325	-	(p)ppGpp 3'-pyrophosphohydrolase
1504	 53.36	+1	1658511..1659788	-	425	16330671	ahcY	sll1234	-	S-adenosyl-L-homocysteine hydrolase
1505	 32.88	-2	1660069..1660287	+	72	16330672	-	ssr2201	-	hypothetical protein
1506	 33.79	-2	1660277..1660711	+	144	16330673	-	slr1327	-	hypothetical protein
1507	 51.30	0	1660739..1661623	-	294	16330674	-	sll1233	-	hypothetical protein
1508	 40.07	-1	1661722..1662285	-	187	16330675	-	sll1232	-	hypothetical protein
1509	 41.67	-1	1662306..1663505	-	399	16330676	mtfB	sll1231	-	mannosyltransferase B
1510	 49.78	0	1663554..1664690	-	378	16330677	-	sll1229	-	hybrid sensory kinase
1511	 51.31	0	1664798..1666699	-	633	16330678	-	sll1228	-	hybrid sensory kinase
1512	 52.89	0	1666932..1668383	+	483	16330679	atpB	slr1329	-	F0F1 ATP synthase subunit beta
1513	 53.77	+1	1668531..1668941	+	136	161344760	atpC	slr1330	-	F0F1 ATP synthase subunit epsilon
1514	 51.23	0	1669101..1670642	+	513	16330681	ymxG	slr1331	-	processing protease
48.22	MEAN

4.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.