IslandPathversion 1.0

IslandPath Analysis: Synechocystis sp. PCC 6803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.22 STD DEV: 4.98
Synechocystis sp. PCC 6803, complete genome - 1..3573470
3172 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1376	 51.17	0	1522300..1522899	+	199	16330544	-	slr0269	-	hypothetical protein
1377	 51.71	0	1522990..1523310	+	106	16330545	-	slr0270	-	hypothetical protein
1378	 42.08	-1	1523527..1523709	-	60	16330546	nblA	ssl0453	-	phycobilisome degradation protein; NblA
1379	 51.32	0	1523796..1523984	-	62	16330547	nblA	ssl0452	-	phycobilisome degradation protein; NblA
1380	 46.44	0	1524568..1525086	+	172	16330548	-	slr0271	-	hypothetical protein
1381	 47.55	0	1525205..1526182	+	325	16330549	-	slr0272	-	hypothetical protein
1382	 49.21	0	1526224..1527174	+	316	16330550	-	slr0273	-	hypothetical protein
1383	 38.69	-1	1527171..1528421	-	416	16330551	-	sll0243	-	hypothetical protein
1384	 44.59	0	1528472..1531261	-	929	16330552	-	sll0242	-	hypothetical protein
1385	 48.68	0	1531264..1532286	-	340	16330553	-	sll0241	-	hypothetical protein
1386	 50.23	0	1532301..1532957	-	218	16330554	-	sll0240	-	ABC transporter
1387	 52.90	0	1532944..1534548	-	534	16330555	-	sll0238	-	hypothetical protein
1388	 49.42	0	1534548..1535579	-	343	16330556	-	sll0237	-	hypothetical protein
1389	 38.89	-1	1535654..1535923	-	89	16330557	-	ssl0438	-	50S ribosomal protein L12 honologue
1390	 48.42	0	1536117..1537793	-	558	16330558	-	sll0236	-	hypothetical protein
1391	 49.09	0	1537828..1538811	+	327	16330559	-	slr2079	-	glutaminase
1392	 34.57	-2	1538916..1539158	+	80	16330560	-	ssr3532	-	hypothetical protein
1393	 42.60	-1	1539145..1539597	+	150	16330561	-	slr2080	-	hypothetical protein
1394	 48.45	0	1539677..1540516	+	279	16330562	tyrA	slr2081	-	arogenate dehydrogenase
1395	 49.24	0	1540650..1542284	+	544	16330563	ctaD	slr2082	-	cytochrome c oxidase subunit I
1396	 47.24	0	1542341..1542937	+	198	16330564	ctaE	slr2083	-	cytochrome c oxidase subunit III
1397	 44.74	0	1543036..1543701	+	221	16330565	-	slr2084	-	hypothetical protein
1398	 55.01	+1	1543757..1544665	-	302	16330566	hslO	sll1988	-	Hsp33-like chaperonin
1399	 51.74	0	1544714..1546978	-	754	16330567	katG	sll1987	-	catalase HPI
1400	 43.79	0	1547182..1548558	+	458	16330568	ycf44	slr2087	-	hypothetical protein
1401	 52.68	0	1548873..1550738	+	621	16330569	ilvG	slr2088	-	acetolactate synthase 3 catalytic subunit
1402	 51.34	0	1550952..1552895	+	647	16330570	shc	slr2089	-	squalene-hopene-cyclase
1403	 35.00	-2	1553601..1553960	-	119	16330571	-	sll1985	-	transposase
1404	 36.77	-2	1553929..1554423	-	164	16330572	-	sll1984	-	transposase
1405	 36.39	-2	1554417..1554776	-	119	16330573	-	sll1983	-	transposase
1406	 36.55	-2	1555061..1555774	-	237	16330574	-	sll1982	-	transposase
1407	 47.76	0	1556037..1556438	+	133	16330575	-	slr2092	-	hypothetical protein
1408	 51.30	0	1556475..1558127	-	550	16330576	ilvB	sll1981	-	acetolactate synthase
1409	 48.00	0	1558427..1558651	-	74	16330577	-	ssl3769	-	hypothetical protein
1410	 54.51	+1	1559069..1559611	-	180	16330578	trxA	sll1980	-	thiol:disulfide interchange protein; TrxA
1411	 51.52	0	1559722..1560150	-	142	16330579	-	sll1979	-	hypothetical protein
1412	 51.73	0	1560387..1561424	+	345	16330580	glpX	slr2094	-	fructose 1,6-bisphosphatase II
1413	 43.90	0	1561693..1562118	+	141	16330581	-	slr2095	-	transposase
1414	 45.08	0	1562007..1562423	+	138	16330582	-	slr2096	-	transposase
1415	 49.33	0	1562468..1562842	+	124	16330583	glbN	slr2097	-	cyanoglobin
1416	 50.29	0	1563115..1566900	+	1261	16330584	-	slr2098	-	hybrid sensory kinase
1417	 48.68	0	1566990..1568090	+	366	16330585	-	slr2099	-	hybrid sensory kinase
1418	 47.70	0	1568317..1569423	+	368	16330586	-	slr2100	-	regulatory components of sensory transduction system
1419	 50.46	0	1569588..1570019	+	143	16330587	-	slr2101	-	hypothetical protein
1420	 53.73	+1	1570209..1571723	+	504	16330588	ftsY	slr2102	-	cell division protein; FtsY
1421	 51.41	0	1571731..1572615	+	294	16330589	-	slr2103	-	hypothetical protein
1422	 47.95	0	1572849..1575701	+	950	16330590	-	slr2104	-	hybrid sensory kinase
1423	 51.87	0	1575924..1576592	-	222	16330591	-	sll1973	-	hypothetical protein
1424	 51.23	0	1576765..1578552	+	595	16330592	-	slr2105	-	hypothetical protein
1425	 47.98	0	1578725..1579243	-	172	16330593	apt	sll1430	-	adenine phosphoribosyltransferase
1426	 29.51	-2	1579624..1580538	-	304	16330594	-	sll1429	-	hypothetical protein
1427	 45.37	0	1580586..1580801	-	71	16330595	-	ssl2789	-	resolvase
1428	 42.09	-1	1580932..1581810	-	292	16330596	-	sll1428	-	P3 protein
1429	 51.06	0	1582206..1583198	+	330	16330597	-	slr1503	-	hypothetical protein
1430	 54.36	+1	1583249..1584499	-	416	16330598	hhoB	sll1427	-	protease; HhoB
1431	 48.20	0	1584613..1585083	-	156	16330599	-	sll1426	-	hypothetical protein
1432	 50.17	0	1585209..1587020	-	603	161344762	proS	sll1425	-	prolyl-tRNA synthetase
1433	 50.42	0	1587231..1587827	+	198	16330601	-	slr1505	-	hypothetical protein
1434	 49.32	0	1587899..1589374	-	491	16330602	-	sll1424	-	hypothetical protein
1435	 50.00	0	1589384..1590061	-	225	16330603	ntcA	sll1423	-	global nitrogen regulator
1436	 47.39	0	1590134..1590382	-	82	16330604	-	ssl2781	-	hypothetical protein
1437	 50.56	0	1590496..1592364	+	622	16330605	-	slr1506	-	hypothetical protein
1438	 50.05	0	1592918..1594000	+	360	16330606	-	slr1507	-	hypothetical protein
1439	 51.28	0	1594119..1595288	+	389	16330607	-	slr1508	-	hypothetical protein
1440	 48.69	0	1595285..1596619	+	444	16330608	ntpJ	slr1509	-	Na+ -ATPase subunit J
1441	 50.53	0	1596795..1597841	+	348	16330609	plsX	slr1510	-	putative glycerol-3-phosphate acyltransferase PlsX
1442	 53.17	0	1597936..1598928	+	330	161344761	fabH	slr1511	-	3-oxoacyl-(acyl carrier protein) synthase III
1443	 50.62	0	1598972..1599538	-	188	16330611	-	sll1418	-	hypothetical protein
1444	 49.33	0	1600659..1601783	+	374	16330612	-	slr1512	-	hypothetical protein
1445	 45.35	0	1601869..1602201	+	110	16330613	-	slr1513	-	hypothetical protein
1446	 51.95	0	1602482..1603405	-	307	16330614	ppnK	sll1415	-	inorganic polyphosphate/ATP-NAD kinase
1447	 49.38	0	1603437..1604159	-	240	16330615	-	sll1414	-	Thf1-like protein
1448	 47.95	0	1604293..1604463	+	56	16330616	-	ssr2549	-	hypothetical protein
1449	 52.84	0	1604863..1606287	+	474	16330617	-	slr1515	-	hypothetical protein
1450	 54.74	+1	1606361..1606645	+	94	16330618	-	ssr2551	-	hypothetical protein
1451	 50.17	0	1607353..1607952	+	199	16330619	sodB	slr1516	-	superoxide dismutase
1452	 52.71	0	1608232..1609320	+	362	16330620	leuB	slr1517	-	3-isopropylmalate dehydrogenase
1453	 51.69	0	1609539..1609805	+	88	16330621	-	ssr2554	-	hypothetical protein
1454	 50.43	0	1609826..1610749	+	307	16330622	menA	slr1518	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
1455	 52.17	0	1610727..1611464	+	245	16330623	hglK	slr1519	-	HglK
1456	 48.67	0	1611574..1612629	+	351	16330624	-	slr1520	-	hypothetical protein
1457	 53.83	+1	1612797..1614401	+	534	16330625	hflX	slr1521	-	GTP-binding protein; HflX
1458	 35.10	-2	1614572..1615648	+	358	16330626	-	slr1522	-	transposase
1459	 36.06	-2	1615869..1616528	+	219	16330627	-	slr1523	-	transposase
1460	 36.24	-2	1616904..1617419	+	171	16330628	-	slr1524	-	transposase
1461	 42.01	-1	1617376..1617813	-	145	16330629	-	sll1411	-	hypothetical protein
1462	 45.36	0	1617806..1618096	-	96	16330630	-	ssl2749	-	hypothetical protein
1463	 50.69	0	1618127..1619653	-	508	16330631	lap	sll2001	-	leucyl aminopeptidase
1464	 52.15	0	1620037..1620222	+	61	16330632	-	ssr3570	-	hypothetical protein
1465	 35.23	-2	1620276..1620539	+	87	16330633	-	ssr3571	-	hypothetical protein
1466	 50.17	0	1620973..1621881	+	302	16330634	kpsM	slr2107	-	polysialic acid transport protein; KpsM
1467	 45.34	0	1621978..1623093	+	371	16330635	kpsT	slr2108	-	polysialic acid transport ATP-binding protein; KpsT
1468	 29.48	-2	1623130..1623648	-	172	16330636	-	sll1999	-	transposase
1469	 36.63	-2	1623723..1624571	-	282	16330637	-	sll1998	-	transposase
1470	 34.19	-2	1624628..1625095	-	155	16330638	-	sll1997	-	transposase
1471	 28.95	-2	1625291..1625632	+	113	16330639	-	slr2110	-	hypothetical protein
1472	 45.36	0	1625622..1626095	+	157	16330640	-	slr2111	-	hypothetical protein
1473	 36.11	-2	1626165..1626524	+	119	16330641	-	slr2112	-	transposase
1474	 36.77	-2	1626518..1627012	+	164	16330642	-	slr2113	-	transposase
1475	 38.44	-1	1626981..1628018	+	345	16330643	spsC	slr2114	-	spore coat polysaccharide biosynthesis protein; SpsC
48.22	MEAN

4.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.