IslandPath Analysis: Synechocystis sp. PCC 6803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.22   STD DEV: 4.98
Synechocystis sp. PCC 6803, complete genome - 1..3573470
3172 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1122	 56.30	+1	1242336..1242605	+	89	16330290	-	ssr3188	-	hypothetical protein
1123	 54.22	+1	1242765..1242989	-	74	16330291	-	ssl3364	-	hypothetical protein
1124	 50.89	0	1243274..1244287	+	337	161344764	trpS	slr1884	-	tryptophanyl-tRNA synthetase
1125	 51.19	0	1244438..1244605	+	55	16330293	-	ssr3189	-	hypothetical protein
1126	 47.32	0	1244731..1245309	+	192	16330294	-	slr1885	-	hypothetical protein
1127	 50.54	0	1245395..1245859	+	154	16330295	-	slr1886	-	putative iojap protein
1128	 48.61	0	1245892..1247115	-	407	16330296	-	sll1755	-	hypothetical protein
1129	 50.99	0	1247192..1248154	+	320	16330297	hemC	slr1887	-	porphobilinogen deaminase
1130	 45.48	0	1248284..1250176	+	630	16330298	-	slr1888	-	hypothetical protein
1131	 46.90	0	1250442..1252535	+	697	16330299	pta	slr2132	-	phosphate acetyltransferase
1132	 47.80	0	1252593..1253207	-	204	16330300	-	sll2015	-	hypothetical protein
1133	 45.24	0	1253269..1253982	-	237	16330301	sfsA	sll2014	-	sugar fermentation stimulation protein A
1134	 47.79	0	1254036..1254623	-	195	16330302	-	sll2013	-	hypothetical protein
1135	 51.20	0	1254783..1255739	-	318	16330303	rpoD	sll2012	-	RNA polymerase sigma factor SigD
1136	 49.28	0	1256125..1256751	-	208	16330304	-	sll2011	-	hypothetical protein
1137	 50.70	0	1256905..1258263	-	452	16330305	murD	sll2010	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
1138	 50.54	0	1258444..1259751	-	435	16330306	-	sll2009	-	processing protease
1139	 53.67	+1	1259760..1261052	-	430	16330307	-	sll2008	-	processing protease
1140	 52.90	0	1261217..1261993	+	258	16330308	hupE	slr2135	-	hydrogenase accessory protein
1141	 52.39	0	1262049..1263260	+	403	16330309	ispG	slr2136	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
1142	 47.24	0	1263414..1263830	-	138	16330310	-	sll2007	-	hypothetical protein
1143	 48.46	0	1263823..1264179	-	118	16330311	-	sll2006	-	hypothetical protein
1144	 45.51	0	1264328..1267564	-	1078	16330312	gyrB	sll2005	-	DNA gyrase B subunit
1145	 50.39	0	1267693..1267950	-	85	16330313	-	ssl3829	-	hypothetical protein
1146	 55.00	+1	1268189..1268308	-	39	16330314	ycf32	sml0007	-	ycf32 gene product
1147	 51.42	0	1268388..1269410	+	340	16330315	-	slr2141	-	hypothetical protein
1148	 48.72	0	1269407..1270738	-	443	16330316	-	sll2003	-	hypothetical protein
1149	 52.90	0	1271069..1272274	+	401	16330317	cefD	slr2143	-	isopenicillin N epimerase
1150	 50.51	0	1272370..1273248	-	292	16330318	-	sll2002	-	hypothetical protein
1151	 50.44	0	1273408..1274313	+	301	16330319	-	slr2144	-	hypothetical protein
1152	 35.16	-2	1274352..1275281	+	309	16330320	mbpA	slr1803	-	adenine-specific DNA metylase
1153	 45.93	0	1275372..1276157	-	261	16330321	-	sll1710	-	transposase
1154	 49.40	0	1276236..1276982	-	248	16330322	gdh	sll1709	-	glucose dehydrogenase
1155	 54.74	+1	1277108..1277392	-	94	16330323	-	ssl3291	-	hypothetical protein
1156	 50.51	0	1277442..1278122	-	226	16330324	-	sll1708	-	NarL subfamily protein
1157	 54.49	+1	1278293..1280542	+	749	16330325	-	slr1805	-	sensory transduction histidine kinase
1158	 45.91	0	1280567..1281337	-	256	16330326	csgA	sll1704	-	cell-cell signaling protein, C-factor
1159	 48.55	0	1281361..1283193	-	610	16330327	sppA	sll1703	-	protease IV
1160	 52.44	0	1283190..1283702	-	170	16330328	-	sll1702	-	hypothetical protein
1161	 51.15	0	1283741..1284526	+	261	16330329	-	slr1807	-	hypothetical protein
1162	 51.32	0	1284660..1285943	+	427	161344763	hemA	slr1808	-	glutamyl-tRNA reductase
1163	 51.88	0	1286105..1286902	+	265	16330331	-	slr1809	-	hypothetical protein
1164	 46.31	0	1286868..1288763	-	631	16330332	-	sll1699	-	extracellular solute-binding protein
1165	 50.13	0	1288732..1289112	-	126	16330333	-	sll1698	-	hypothetical protein
1166	 53.00	0	1289389..1290354	-	321	16330334	-	sll1697	-	hypothetical protein
1167	 41.25	-1	1290478..1290957	+	159	16330335	-	slr1811	-	hypothetical protein
1168	 36.90	-2	1291080..1291556	+	158	16330336	-	slr1812	-	hypothetical protein
1169	 38.96	-1	1291631..1292092	+	153	16330337	-	slr1813	-	hypothetical protein
1170	 38.06	-2	1292215..1292679	+	154	16330338	-	slr1814	-	hypothetical protein
1171	 37.62	-2	1292820..1293356	+	178	16330339	-	slr1815	-	hypothetical protein
1172	 36.82	-2	1293398..1295551	+	717	16330340	-	slr1816	-	hypothetical protein
1173	 38.50	-1	1295568..1296380	-	270	16330341	-	sll1696	-	hypothetical protein
1174	 41.52	-1	1296382..1296894	-	170	16330342	hofG	sll1695	-	general secretion pathway protein G
1175	 46.94	0	1296993..1297499	-	168	16330343	hofG	sll1694	-	general secretion pathway protein G
1176	 46.11	0	1297643..1298965	-	440	16330344	-	sll1693	-	hypothetical protein
1177	 45.87	0	1299120..1299725	+	201	16330345	-	slr1818	-	hypothetical protein
1178	 43.38	0	1299729..1300166	-	145	16330346	-	sll1692	-	hypothetical protein
1179	 48.79	0	1300159..1300611	-	150	16330347	-	sll1691	-	hypothetical protein
1180	 52.41	0	1300661..1301656	+	331	16330348	-	slr1819	-	hypothetical protein
1181	 51.62	0	1301671..1302780	-	369	16330349	rpoD	sll1689	-	RNA polymerase sigma factor
1182	 53.00	0	1303295..1304596	-	433	16330350	thrC	sll1688	-	threonine synthase
1183	 42.29	-1	1304971..1306443	+	490	16330351	-	slr1820	-	hypothetical protein
1184	 47.41	0	1306436..1309348	-	970	16330352	-	sll1687	-	hypothetical protein
1185	 51.59	0	1309482..1310582	+	366	16330353	-	slr1821	-	hypothetical protein
1186	 51.21	0	1310575..1311234	+	219	16330354	nth	slr1822	-	endonuclease III
1187	 48.22	0	1311828..1312277	+	149	16330355	-	slr1732	-	hypothetical protein
1188	 51.31	0	1312309..1312803	-	164	16330356	-	sll1631	-	hypothetical protein
1189	 38.73	-1	1312843..1313268	-	141	16330357	-	sll1630	-	hypothetical protein
1190	 42.22	-1	1313278..1314639	-	453	16330358	phr	sll1629	-	DNA photolyase
1191	 51.08	0	1314909..1316063	-	384	16330359	-	sll1628	-	hypothetical protein
1192	 52.94	0	1316227..1317654	+	475	16330360	opcA	slr1734	-	OxPPCycle gene
1193	 52.44	0	1317712..1318470	+	252	16330361	-	slr1735	-	ABC transporter
1194	 49.35	0	1318719..1319330	-	203	16330362	lexA	sll1626	-	SOS function regulatory protein
1195	 50.80	0	1319546..1320541	-	331	16330363	sdhB	sll1625	-	succinate dehydrogenase iron-sulfur subunit
1196	 48.66	0	1320835..1321839	-	334	16330364	-	sll1624	-	regulatory components of sensory transduction system
1197	 51.64	0	1321852..1322523	-	223	16330365	-	sll1623	-	ABC transporter
1198	 45.31	0	1322687..1323613	+	308	16330366	ubiA	slr1736	-	tocopherol phytyltransferase
1199	 49.18	0	1323672..1324763	+	363	16330367	-	slr1737	-	hypothetical protein
1200	 49.30	0	1324835..1325404	-	189	16330368	-	sll1621	-	membrane protein
1201	 52.38	0	1325715..1326134	+	139	16330369	-	slr1738	-	hypothetical protein
1202	 50.31	0	1326150..1326626	-	158	16330370	-	sll1620	-	hypothetical protein
1203	 49.05	0	1326880..1327248	+	122	16330371	-	slr1739	-	photosystem II protein
1204	 50.83	0	1327367..1329115	+	582	16330372	-	slr1740	-	extracellular solute-binding protein
1205	 53.73	+1	1329388..1329990	-	200	16330373	-	sll1618	-	hypothetical protein
1206	 52.40	0	1330110..1330880	+	256	16330374	-	slr1742	-	hypothetical protein
1207	 52.51	0	1330930..1332144	+	404	16330375	ndh	slr1743	-	NADH dehydrogenase
1208	 53.74	+1	1332429..1334378	+	649	16330376	amiA	slr1744	-	N-acetylmuramoyl-L-alanine amidase
1209	 52.74	0	1334522..1335361	+	279	16330377	murI	slr1746	-	glutamate racemase
1210	 48.16	0	1335571..1336980	+	469	16330378	-	slr1747	-	hypothetical protein
1211	 50.82	0	1337299..1338636	+	445	16330379	ndh	slr0851	-	NADH dehydrogenase
1212	 45.92	0	1338727..1339155	+	142	16330380	-	slr0852	-	hypothetical protein
1213	 51.57	0	1339155..1339631	+	158	16330381	rimI	slr0853	-	ribosomal-protein-alanine acetyltransferase
1214	 51.26	0	1339656..1341122	+	488	16330382	phr	slr0854	-	deoxyribopyrimidine photolyase
1215	 46.80	0	1341131..1341724	-	197	16330383	-	sll0858	-	hypothetical protein
1216	 55.40	+1	1341694..1342110	-	138	16330384	-	sll0857	-	hypothetical protein
1217	 49.73	0	1342052..1342612	-	186	16330385	rpoE	sll0856	-	RNA polymerase sigma factor
1218	 49.93	0	1342775..1344130	-	451	16330386	-	sll0855	-	chloride channel protein
1219	 50.81	0	1344140..1345066	-	308	16330387	-	sll0854	-	hypothetical protein
1220	 46.88	0	1345117..1345677	-	186	16330388	-	sll0853	-	hypothetical protein
1221	 35.83	-2	1346197..1346556	+	119	16330389	-	slr0856	-	transposase
48.22	MEAN

4.98	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.