IslandPathversion 1.0

IslandPath Analysis: Synechocystis sp. PCC 6803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.22 STD DEV: 4.98
Synechocystis sp. PCC 6803, complete genome - 1..3573470
3172 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1084	 40.38	-1	1204276..1205538	+	420	16330252	-	slr1865	-	hypothetical protein
1085	 39.02	-1	1205546..1206547	+	333	16330253	-	slr1866	-	hypothetical protein
1086	 55.68	+1	1206947..1207993	+	348	16330254	trpD	slr1867	-	anthranilate phosphoribosyltransferase
1087	 52.21	0	1208020..1208697	-	225	16330255	deoC	sll1776	-	deoxyribose-phosphate aldolase
1088	 50.86	0	1208749..1211202	-	817	16330256	-	sll1775	-	hypothetical protein
1089	 44.57	0	1211638..1212420	-	260	16330257	-	sll1774	-	hypothetical protein
1090	 45.85	0	1212600..1213358	+	252	16330258	-	slr1869	-	hypothetical protein
1091	 42.40	-1	1214188..1214937	+	249	16330259	-	slr1870	-	hypothetical protein
1092	 49.36	0	1215453..1216151	-	232	16330260	-	sll1773	-	hypothetical protein
1093	 47.64	0	1216281..1217168	+	295	16330261	-	slr1871	-	transcriptional regulator
1094	 51.32	0	1217156..1219624	-	822	16330262	mutS	sll1772	-	recombination and DNA strand exchange inhibitor protein
1095	 50.07	0	1219654..1220418	-	254	16330263	-	sll1771	-	hypothetical protein
1096	 49.72	0	1220473..1222230	-	585	16330264	-	sll1770	-	ABC1-like
1097	 54.09	+1	1222610..1222927	-	105	16330265	-	sll1769	-	hypothetical protein
1098	 56.41	+1	1222937..1223209	-	90	16330266	-	ssl3383	-	hypothetical protein
1099	 48.59	0	1223255..1223431	-	58	16330267	-	ssl3382	-	hypothetical protein
1100	 49.24	0	1223666..1224646	-	326	16330268	-	sll1768	-	OppB in a binding protein-dependent transport system
1101	 52.02	0	1224777..1225841	+	354	16330269	ddl	slr1874	-	D-alanyl-alanine synthetase A
1102	 49.30	0	1225928..1226566	+	212	16330270	exoD	slr1875	-	exopolysaccharide synthesis protein; ExoD
1103	 51.52	0	1226686..1226982	-	98	16330271	clpS	ssl3379	-	ATP-dependent Clp protease adaptor
1104	 54.64	+1	1227090..1227563	+	157	16330272	-	slr1876	-	hypothetical protein
1105	 43.86	0	1227591..1227932	-	113	16330273	rps6	sll1767	-	30S ribosomal protein S6
1106	 52.11	0	1228237..1229067	+	276	16330274	hpcE	slr1877	-	5-oxo-1,2,5-tricarboxilic-3-penten acid decarboxilase/isomer
1107	 53.60	+1	1229120..1229938	+	272	16330275	cpcE	slr1878	-	phycocyanin alpha phycocyanobilin lyase; CpcE
1108	 41.85	-1	1229971..1231167	-	398	16330276	aslB	sll1766	-	putative arylsulfatase regulatory protein
1109	 43.54	0	1231207..1231686	-	159	16330277	-	sll1765	-	hypothetical protein
1110	 55.86	+1	1231770..1232204	-	144	16330278	-	sll1764	-	hypothetical protein
1111	 55.06	+1	1232271..1232675	-	134	16330279	-	sll1763	-	hypothetical protein
1112	 49.35	0	1232784..1233932	-	382	16330280	-	sll1762	-	hypothetical protein
1113	 45.27	0	1233784..1234512	+	242	16330281	cbiL	slr1879	-	precorrin-2 methyltransferase
1114	 43.58	0	1234509..1235123	-	204	16330282	-	sll1761	-	hypothetical protein
1115	 53.53	+1	1235136..1236056	-	306	16330283	thrB	sll1760	-	homoserine kinase
1116	 43.83	0	1236316..1237449	+	377	16330284	-	slr1880	-	hypothetical protein
1117	 53.94	+1	1237543..1238988	-	481	16330285	-	sll1758	-	hypothetical protein
1118	 57.46	+1	1239156..1239383	+	75	16330286	-	ssr3184	-	ferredoxin
1119	 49.93	0	1239490..1240212	+	240	16330287	livF	slr1881	-	high-affinity branched-chain amino acid transport ATP-binding protein; BraG
1120	 51.49	0	1240361..1241302	+	313	161344765	-	slr1882	-	bifunctional riboflavin kinase/FMN adenylyltransferase
1121	 48.92	0	1241313..1242191	-	292	16330289	-	sll1757	-	hypothetical protein
1122	 56.30	+1	1242336..1242605	+	89	16330290	-	ssr3188	-	hypothetical protein
1123	 54.22	+1	1242765..1242989	-	74	16330291	-	ssl3364	-	hypothetical protein
1124	 50.89	0	1243274..1244287	+	337	161344764	trpS	slr1884	-	tryptophanyl-tRNA synthetase
1125	 51.19	0	1244438..1244605	+	55	16330293	-	ssr3189	-	hypothetical protein
1126	 47.32	0	1244731..1245309	+	192	16330294	-	slr1885	-	hypothetical protein
1127	 50.54	0	1245395..1245859	+	154	16330295	-	slr1886	-	putative iojap protein
1128	 48.61	0	1245892..1247115	-	407	16330296	-	sll1755	-	hypothetical protein
1129	 50.99	0	1247192..1248154	+	320	16330297	hemC	slr1887	-	porphobilinogen deaminase
1130	 45.48	0	1248284..1250176	+	630	16330298	-	slr1888	-	hypothetical protein
1131	 46.90	0	1250442..1252535	+	697	16330299	pta	slr2132	-	phosphate acetyltransferase
1132	 47.80	0	1252593..1253207	-	204	16330300	-	sll2015	-	hypothetical protein
1133	 45.24	0	1253269..1253982	-	237	16330301	sfsA	sll2014	-	sugar fermentation stimulation protein A
1134	 47.79	0	1254036..1254623	-	195	16330302	-	sll2013	-	hypothetical protein
1135	 51.20	0	1254783..1255739	-	318	16330303	rpoD	sll2012	-	RNA polymerase sigma factor SigD
1136	 49.28	0	1256125..1256751	-	208	16330304	-	sll2011	-	hypothetical protein
1137	 50.70	0	1256905..1258263	-	452	16330305	murD	sll2010	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
1138	 50.54	0	1258444..1259751	-	435	16330306	-	sll2009	-	processing protease
1139	 53.67	+1	1259760..1261052	-	430	16330307	-	sll2008	-	processing protease
1140	 52.90	0	1261217..1261993	+	258	16330308	hupE	slr2135	-	hydrogenase accessory protein
1141	 52.39	0	1262049..1263260	+	403	16330309	ispG	slr2136	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
1142	 47.24	0	1263414..1263830	-	138	16330310	-	sll2007	-	hypothetical protein
1143	 48.46	0	1263823..1264179	-	118	16330311	-	sll2006	-	hypothetical protein
1144	 45.51	0	1264328..1267564	-	1078	16330312	gyrB	sll2005	-	DNA gyrase B subunit
1145	 50.39	0	1267693..1267950	-	85	16330313	-	ssl3829	-	hypothetical protein
1146	 55.00	+1	1268189..1268308	-	39	16330314	ycf32	sml0007	-	ycf32 gene product
1147	 51.42	0	1268388..1269410	+	340	16330315	-	slr2141	-	hypothetical protein
1148	 48.72	0	1269407..1270738	-	443	16330316	-	sll2003	-	hypothetical protein
1149	 52.90	0	1271069..1272274	+	401	16330317	cefD	slr2143	-	isopenicillin N epimerase
1150	 50.51	0	1272370..1273248	-	292	16330318	-	sll2002	-	hypothetical protein
1151	 50.44	0	1273408..1274313	+	301	16330319	-	slr2144	-	hypothetical protein
1152	 35.16	-2	1274352..1275281	+	309	16330320	mbpA	slr1803	-	adenine-specific DNA metylase
1153	 45.93	0	1275372..1276157	-	261	16330321	-	sll1710	-	transposase
1154	 49.40	0	1276236..1276982	-	248	16330322	gdh	sll1709	-	glucose dehydrogenase
1155	 54.74	+1	1277108..1277392	-	94	16330323	-	ssl3291	-	hypothetical protein
1156	 50.51	0	1277442..1278122	-	226	16330324	-	sll1708	-	NarL subfamily protein
1157	 54.49	+1	1278293..1280542	+	749	16330325	-	slr1805	-	sensory transduction histidine kinase
1158	 45.91	0	1280567..1281337	-	256	16330326	csgA	sll1704	-	cell-cell signaling protein, C-factor
1159	 48.55	0	1281361..1283193	-	610	16330327	sppA	sll1703	-	protease IV
1160	 52.44	0	1283190..1283702	-	170	16330328	-	sll1702	-	hypothetical protein
1161	 51.15	0	1283741..1284526	+	261	16330329	-	slr1807	-	hypothetical protein
1162	 51.32	0	1284660..1285943	+	427	161344763	hemA	slr1808	-	glutamyl-tRNA reductase
1163	 51.88	0	1286105..1286902	+	265	16330331	-	slr1809	-	hypothetical protein
1164	 46.31	0	1286868..1288763	-	631	16330332	-	sll1699	-	extracellular solute-binding protein
1165	 50.13	0	1288732..1289112	-	126	16330333	-	sll1698	-	hypothetical protein
1166	 53.00	0	1289389..1290354	-	321	16330334	-	sll1697	-	hypothetical protein
1167	 41.25	-1	1290478..1290957	+	159	16330335	-	slr1811	-	hypothetical protein
1168	 36.90	-2	1291080..1291556	+	158	16330336	-	slr1812	-	hypothetical protein
1169	 38.96	-1	1291631..1292092	+	153	16330337	-	slr1813	-	hypothetical protein
1170	 38.06	-2	1292215..1292679	+	154	16330338	-	slr1814	-	hypothetical protein
1171	 37.62	-2	1292820..1293356	+	178	16330339	-	slr1815	-	hypothetical protein
1172	 36.82	-2	1293398..1295551	+	717	16330340	-	slr1816	-	hypothetical protein
1173	 38.50	-1	1295568..1296380	-	270	16330341	-	sll1696	-	hypothetical protein
1174	 41.52	-1	1296382..1296894	-	170	16330342	hofG	sll1695	-	general secretion pathway protein G
1175	 46.94	0	1296993..1297499	-	168	16330343	hofG	sll1694	-	general secretion pathway protein G
1176	 46.11	0	1297643..1298965	-	440	16330344	-	sll1693	-	hypothetical protein
1177	 45.87	0	1299120..1299725	+	201	16330345	-	slr1818	-	hypothetical protein
1178	 43.38	0	1299729..1300166	-	145	16330346	-	sll1692	-	hypothetical protein
1179	 48.79	0	1300159..1300611	-	150	16330347	-	sll1691	-	hypothetical protein
1180	 52.41	0	1300661..1301656	+	331	16330348	-	slr1819	-	hypothetical protein
1181	 51.62	0	1301671..1302780	-	369	16330349	rpoD	sll1689	-	RNA polymerase sigma factor
1182	 53.00	0	1303295..1304596	-	433	16330350	thrC	sll1688	-	threonine synthase
1183	 42.29	-1	1304971..1306443	+	490	16330351	-	slr1820	-	hypothetical protein
48.22	MEAN

4.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.