IslandPathversion 1.0

IslandPath Analysis: Synechocystis sp. PCC 6803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.22 STD DEV: 4.98
Synechocystis sp. PCC 6803, complete genome - 1..3573470
3172 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1048	 50.13	0	1161856..1163367	-	503	16330216	-	sll0862	-	hypothetical protein
1049	 51.31	0	1163421..1164338	-	305	16330217	murQ	sll0861	-	N-acetylmuramic acid-6-phosphate etherase
1050	 50.19	0	1164496..1165017	-	173	16330218	-	sll0860	-	hypothetical protein
1051	 51.98	0	1165087..1166073	-	328	16330219	petA	sll1317	-	apocytochrome f
1052	 53.02	0	1166186..1166764	-	192	16330220	petC	sll1316	-	cytochrome b6-f complex iron-sulfur subunit
1053	 48.21	0	1167053..1167247	-	64	16330221	psbH	ssl2598	-	photosystem II reaction center protein H
1054	 50.00	0	1167333..1167464	+	43	16330222	psbN	smr0009	-	photosystem II reaction center protein N
1055	 47.41	0	1167510..1167779	-	89	16330223	-	ssl2595	-	YciI-like protein
1056	 39.75	-1	1167961..1169019	-	352	16330224	-	sll1315	-	hypothetical protein
1057	 41.98	-1	1169078..1170187	-	369	16330225	dctP	sll1314	-	C4-dicarboxylase binding protein
1058	 47.65	0	1170571..1179621	+	3016	16330226	-	slr1403	-	integrin alpha- and beta4- subunit
1059	 50.33	0	1179926..1180672	-	248	16330227	-	sll1308	-	short chain dehydrogenase
1060	 47.99	0	1181064..1181609	+	181	16330228	-	slr1406	-	hypothetical protein
1061	 43.33	0	1181716..1182585	+	289	16330229	-	slr1407	-	hypothetical protein
1062	 43.53	0	1182665..1183645	+	326	16330230	-	slr1409	-	beta transducin-like protein
1063	 43.48	0	1183660..1184664	+	334	16330231	-	slr1410	-	beta transducin-like protein
1064	 52.27	0	1184711..1185238	-	175	16330232	-	sll1307	-	hypothetical protein
1065	 46.63	0	1185300..1186307	-	335	16330233	-	sll1306	-	hypothetical protein
1066	 44.37	0	1186311..1187198	-	295	16330234	-	sll1305	-	hypothetical protein
1067	 42.94	-1	1187219..1188082	-	287	16330235	-	sll1304	-	hypothetical protein
1068	 43.37	0	1188079..1188885	-	268	16330236	-	sll1785	-	hypothetical protein
1069	 43.16	-1	1189110..1189913	-	267	16330237	-	sll1784	-	hypothetical protein
1070	 40.77	-1	1189940..1190383	-	147	16330238	-	sll1783	-	hypothetical protein
1071	 47.27	0	1190867..1191433	+	188	16330239	-	slr1852	-	hypothetical protein
1072	 44.44	0	1191445..1191786	+	113	16330240	-	slr1853	-	hypothetical protein
1073	 44.72	0	1191856..1192452	+	198	16330241	-	slr1854	-	hypothetical protein
1074	 48.74	0	1192485..1194308	+	607	16330242	-	slr1855	-	hypothetical protein
1075	 51.52	0	1194314..1194643	+	109	16330243	-	slr1856	-	anti-sigma B factor antagonist
1076	 49.58	0	1194653..1196776	+	707	16330244	glgX	slr1857	-	glycogen operon protein; GlgX
1077	 37.31	-2	1196836..1197162	+	108	16330245	-	slr1859	-	hypothetical protein
1078	 38.74	-1	1197262..1199166	+	634	16330246	ICFG	slr1860	-	ICFG protein
1079	 38.89	-1	1199172..1199603	+	143	16330247	-	slr1861	-	hypothetical protein
1080	 39.72	-1	1199708..1200412	+	234	16330248	-	slr1862	-	hypothetical protein
1081	 32.35	-2	1200376..1201392	-	338	16330249	-	sll1780	-	transposase
1082	 36.09	-2	1201494..1203014	+	506	16330250	-	slr1863	-	hypothetical protein
1083	 40.43	-1	1203028..1204098	+	356	16330251	-	slr1864	-	hypothetical protein
1084	 40.38	-1	1204276..1205538	+	420	16330252	-	slr1865	-	hypothetical protein
1085	 39.02	-1	1205546..1206547	+	333	16330253	-	slr1866	-	hypothetical protein
1086	 55.68	+1	1206947..1207993	+	348	16330254	trpD	slr1867	-	anthranilate phosphoribosyltransferase
1087	 52.21	0	1208020..1208697	-	225	16330255	deoC	sll1776	-	deoxyribose-phosphate aldolase
1088	 50.86	0	1208749..1211202	-	817	16330256	-	sll1775	-	hypothetical protein
1089	 44.57	0	1211638..1212420	-	260	16330257	-	sll1774	-	hypothetical protein
1090	 45.85	0	1212600..1213358	+	252	16330258	-	slr1869	-	hypothetical protein
1091	 42.40	-1	1214188..1214937	+	249	16330259	-	slr1870	-	hypothetical protein
1092	 49.36	0	1215453..1216151	-	232	16330260	-	sll1773	-	hypothetical protein
1093	 47.64	0	1216281..1217168	+	295	16330261	-	slr1871	-	transcriptional regulator
1094	 51.32	0	1217156..1219624	-	822	16330262	mutS	sll1772	-	recombination and DNA strand exchange inhibitor protein
1095	 50.07	0	1219654..1220418	-	254	16330263	-	sll1771	-	hypothetical protein
1096	 49.72	0	1220473..1222230	-	585	16330264	-	sll1770	-	ABC1-like
1097	 54.09	+1	1222610..1222927	-	105	16330265	-	sll1769	-	hypothetical protein
1098	 56.41	+1	1222937..1223209	-	90	16330266	-	ssl3383	-	hypothetical protein
1099	 48.59	0	1223255..1223431	-	58	16330267	-	ssl3382	-	hypothetical protein
1100	 49.24	0	1223666..1224646	-	326	16330268	-	sll1768	-	OppB in a binding protein-dependent transport system
1101	 52.02	0	1224777..1225841	+	354	16330269	ddl	slr1874	-	D-alanyl-alanine synthetase A
1102	 49.30	0	1225928..1226566	+	212	16330270	exoD	slr1875	-	exopolysaccharide synthesis protein; ExoD
1103	 51.52	0	1226686..1226982	-	98	16330271	clpS	ssl3379	-	ATP-dependent Clp protease adaptor
1104	 54.64	+1	1227090..1227563	+	157	16330272	-	slr1876	-	hypothetical protein
1105	 43.86	0	1227591..1227932	-	113	16330273	rps6	sll1767	-	30S ribosomal protein S6
1106	 52.11	0	1228237..1229067	+	276	16330274	hpcE	slr1877	-	5-oxo-1,2,5-tricarboxilic-3-penten acid decarboxilase/isomer
1107	 53.60	+1	1229120..1229938	+	272	16330275	cpcE	slr1878	-	phycocyanin alpha phycocyanobilin lyase; CpcE
1108	 41.85	-1	1229971..1231167	-	398	16330276	aslB	sll1766	-	putative arylsulfatase regulatory protein
1109	 43.54	0	1231207..1231686	-	159	16330277	-	sll1765	-	hypothetical protein
1110	 55.86	+1	1231770..1232204	-	144	16330278	-	sll1764	-	hypothetical protein
1111	 55.06	+1	1232271..1232675	-	134	16330279	-	sll1763	-	hypothetical protein
1112	 49.35	0	1232784..1233932	-	382	16330280	-	sll1762	-	hypothetical protein
1113	 45.27	0	1233784..1234512	+	242	16330281	cbiL	slr1879	-	precorrin-2 methyltransferase
1114	 43.58	0	1234509..1235123	-	204	16330282	-	sll1761	-	hypothetical protein
1115	 53.53	+1	1235136..1236056	-	306	16330283	thrB	sll1760	-	homoserine kinase
1116	 43.83	0	1236316..1237449	+	377	16330284	-	slr1880	-	hypothetical protein
1117	 53.94	+1	1237543..1238988	-	481	16330285	-	sll1758	-	hypothetical protein
1118	 57.46	+1	1239156..1239383	+	75	16330286	-	ssr3184	-	ferredoxin
1119	 49.93	0	1239490..1240212	+	240	16330287	livF	slr1881	-	high-affinity branched-chain amino acid transport ATP-binding protein; BraG
1120	 51.49	0	1240361..1241302	+	313	161344765	-	slr1882	-	bifunctional riboflavin kinase/FMN adenylyltransferase
1121	 48.92	0	1241313..1242191	-	292	16330289	-	sll1757	-	hypothetical protein
1122	 56.30	+1	1242336..1242605	+	89	16330290	-	ssr3188	-	hypothetical protein
1123	 54.22	+1	1242765..1242989	-	74	16330291	-	ssl3364	-	hypothetical protein
1124	 50.89	0	1243274..1244287	+	337	161344764	trpS	slr1884	-	tryptophanyl-tRNA synthetase
1125	 51.19	0	1244438..1244605	+	55	16330293	-	ssr3189	-	hypothetical protein
1126	 47.32	0	1244731..1245309	+	192	16330294	-	slr1885	-	hypothetical protein
1127	 50.54	0	1245395..1245859	+	154	16330295	-	slr1886	-	putative iojap protein
1128	 48.61	0	1245892..1247115	-	407	16330296	-	sll1755	-	hypothetical protein
1129	 50.99	0	1247192..1248154	+	320	16330297	hemC	slr1887	-	porphobilinogen deaminase
1130	 45.48	0	1248284..1250176	+	630	16330298	-	slr1888	-	hypothetical protein
1131	 46.90	0	1250442..1252535	+	697	16330299	pta	slr2132	-	phosphate acetyltransferase
1132	 47.80	0	1252593..1253207	-	204	16330300	-	sll2015	-	hypothetical protein
1133	 45.24	0	1253269..1253982	-	237	16330301	sfsA	sll2014	-	sugar fermentation stimulation protein A
1134	 47.79	0	1254036..1254623	-	195	16330302	-	sll2013	-	hypothetical protein
1135	 51.20	0	1254783..1255739	-	318	16330303	rpoD	sll2012	-	RNA polymerase sigma factor SigD
1136	 49.28	0	1256125..1256751	-	208	16330304	-	sll2011	-	hypothetical protein
1137	 50.70	0	1256905..1258263	-	452	16330305	murD	sll2010	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
1138	 50.54	0	1258444..1259751	-	435	16330306	-	sll2009	-	processing protease
1139	 53.67	+1	1259760..1261052	-	430	16330307	-	sll2008	-	processing protease
1140	 52.90	0	1261217..1261993	+	258	16330308	hupE	slr2135	-	hydrogenase accessory protein
1141	 52.39	0	1262049..1263260	+	403	16330309	ispG	slr2136	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
1142	 47.24	0	1263414..1263830	-	138	16330310	-	sll2007	-	hypothetical protein
1143	 48.46	0	1263823..1264179	-	118	16330311	-	sll2006	-	hypothetical protein
1144	 45.51	0	1264328..1267564	-	1078	16330312	gyrB	sll2005	-	DNA gyrase B subunit
1145	 50.39	0	1267693..1267950	-	85	16330313	-	ssl3829	-	hypothetical protein
1146	 55.00	+1	1268189..1268308	-	39	16330314	ycf32	sml0007	-	ycf32 gene product
1147	 51.42	0	1268388..1269410	+	340	16330315	-	slr2141	-	hypothetical protein
48.22	MEAN

4.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.