IslandPathversion 1.0

IslandPath Analysis: Synechocystis sp. PCC 6803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.22 STD DEV: 4.98
Synechocystis sp. PCC 6803, complete genome - 1..3573470
3172 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1001	 49.70	0	1105666..1107168	+	500	16330169	-	slr1363	-	hypothetical protein
1002	 53.26	+1	1107242..1108330	+	362	16330170	bioB	slr1364	-	biotin synthetase
1003	 53.67	+1	1108314..1108967	+	217	16330171	bioY	slr1365	-	BioY protein
1004	 52.06	0	1108967..1109452	+	161	16330172	lspA	slr1366	-	lipoprotein signal peptidase
1005	 39.37	-1	1109620..1111044	-	474	16330173	-	sll1273	-	hypothetical protein
1006	 42.80	-1	1111185..1111955	-	256	16330174	-	sll1272	-	hypothetical protein
1007	 48.57	0	1112531..1114249	-	572	16330175	-	sll1271	-	hypothetical protein
1008	 50.09	0	1114429..1116021	-	530	16330176	glnH/glnP	sll1270	-	glutamine-binding periplasmic protein/glutamine transport system permease protein
1009	 42.96	-1	1116360..1116629	-	89	16330177	-	ssl2501	-	hypothetical protein
1010	 49.42	0	1117107..1119674	+	855	16330178	glgP	slr1367	-	glycogen phosphorylase
1011	 51.18	0	1119916..1120509	+	197	161344766	cbiT	slr1368	-	precorrin-6B methylase
1012	 50.45	0	1120643..1121524	+	293	16330180	cdsA	slr1369	-	phosphatidate cytidylyltransferase
1013	 46.14	0	1121627..1123180	-	517	16330181	-	sll1268	-	hypothetical protein
1014	 48.73	0	1123441..1124031	-	196	16330182	-	sll1267	-	hypothetical protein
1015	 52.43	0	1124071..1130007	-	1978	16330183	-	sll1265	-	hypothetical protein
1016	 46.32	0	1130313..1131683	-	456	16330184	-	sll0877	-	hypothetical protein
1017	 43.61	0	1131810..1132247	+	145	16330185	mscL	slr0875	-	large-conductance mechanosensitive channel
1018	 50.63	0	1132264..1132899	-	211	16330186	ruvA	sll0876	-	Holliday junction DNA helicase motor protein
1019	 52.25	0	1132914..1133690	-	258	16330187	-	sll0875	-	hypothetical protein
1020	 52.11	0	1133879..1135108	+	409	16330188	-	slr0876	-	hypothetical protein
1021	 49.21	0	1135337..1135588	+	83	16330189	-	ssr1480	-	RNA-binding protein
1022	 53.24	+1	1135716..1137167	+	483	16330190	gatA	slr0877	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
1023	 53.25	+1	1137375..1138112	+	245	16330191	-	slr0878	-	hypothetical protein
1024	 52.63	0	1138210..1138608	+	132	16330192	gcvH	slr0879	-	glycine decarboxylase complex H-protein
1025	 48.56	0	1138702..1140474	+	590	16330193	-	slr0880	-	secreted protein MPB70 precursor
1026	 50.69	0	1140497..1141660	-	387	16330194	napC	sll0873	-	carboxynorspermidine decarboxylase
1027	 44.13	0	1141803..1142015	-	70	16330195	-	ssl1633	-	high light inducible protein
1028	 54.49	+1	1142101..1142412	+	103	16330196	-	slr0881	-	hypothetical protein
1029	 40.20	-1	1142501..1142893	-	130	16330197	-	sll0872	-	hypothetical protein
1030	 50.38	0	1143047..1144231	+	394	16330198	-	slr0882	-	hypothetical protein
1031	 52.84	0	1144728..1146173	+	481	16330199	psr	slr0883	-	regulation of penicillin binding protein 5 production
1032	 52.68	0	1146290..1146718	-	142	16330200	-	sll0871	-	hypothetical protein
1033	 50.80	0	1147034..1148098	+	354	16330201	gap1	slr0884	-	glyceraldehyde-3-phosphate dehydrogenase
1034	 40.62	-1	1148722..1149297	+	191	16330202	-	slr0885	-	hypothetical protein
1035	 44.22	0	1149471..1150067	-	198	16330203	aat	sll0869	-	leucyl/phenylalanyl-tRNA--protein transferase
1036	 48.36	0	1150122..1151033	-	303	16330204	lipA	sll0868	-	lipoyl synthase
1037	 48.96	0	1151139..1152431	-	430	16330205	-	sll0867	-	hypothetical protein
1038	 50.40	0	1152549..1153292	+	247	16330206	fabG	slr0886	-	3-ketoacyl-(acyl-carrier-protein) reductase
1039	 49.51	0	1153292..1154101	+	269	16330207	-	slr0887	-	hypothetical protein
1040	 50.10	0	1154330..1154836	+	168	16330208	-	slr0888	-	hypothetical protein
1041	 46.37	0	1154857..1156083	+	408	16330209	-	slr0889	-	ABC1-like
1042	 44.07	0	1156234..1156503	+	89	16330210	-	ssr1499	-	hypothetical protein
1043	 41.67	-1	1156580..1156975	+	131	16330211	-	slr0890	-	hypothetical protein
1044	 43.65	0	1157029..1158909	-	626	16330212	uvrC	sll0865	-	excinuclease ABC subunit C
1045	 50.17	0	1159029..1160804	+	591	16330213	amiA	slr0891	-	N-acetylmuramoyl-L-alanine amidase
1046	 43.25	0	1160787..1161260	-	157	16330214	-	sll0864	-	hypothetical protein
1047	 47.01	0	1161441..1161842	-	133	16330215	-	sll0863	-	hypothetical protein
1048	 50.13	0	1161856..1163367	-	503	16330216	-	sll0862	-	hypothetical protein
1049	 51.31	0	1163421..1164338	-	305	16330217	murQ	sll0861	-	N-acetylmuramic acid-6-phosphate etherase
1050	 50.19	0	1164496..1165017	-	173	16330218	-	sll0860	-	hypothetical protein
1051	 51.98	0	1165087..1166073	-	328	16330219	petA	sll1317	-	apocytochrome f
1052	 53.02	0	1166186..1166764	-	192	16330220	petC	sll1316	-	cytochrome b6-f complex iron-sulfur subunit
1053	 48.21	0	1167053..1167247	-	64	16330221	psbH	ssl2598	-	photosystem II reaction center protein H
1054	 50.00	0	1167333..1167464	+	43	16330222	psbN	smr0009	-	photosystem II reaction center protein N
1055	 47.41	0	1167510..1167779	-	89	16330223	-	ssl2595	-	YciI-like protein
1056	 39.75	-1	1167961..1169019	-	352	16330224	-	sll1315	-	hypothetical protein
1057	 41.98	-1	1169078..1170187	-	369	16330225	dctP	sll1314	-	C4-dicarboxylase binding protein
1058	 47.65	0	1170571..1179621	+	3016	16330226	-	slr1403	-	integrin alpha- and beta4- subunit
1059	 50.33	0	1179926..1180672	-	248	16330227	-	sll1308	-	short chain dehydrogenase
1060	 47.99	0	1181064..1181609	+	181	16330228	-	slr1406	-	hypothetical protein
1061	 43.33	0	1181716..1182585	+	289	16330229	-	slr1407	-	hypothetical protein
1062	 43.53	0	1182665..1183645	+	326	16330230	-	slr1409	-	beta transducin-like protein
1063	 43.48	0	1183660..1184664	+	334	16330231	-	slr1410	-	beta transducin-like protein
1064	 52.27	0	1184711..1185238	-	175	16330232	-	sll1307	-	hypothetical protein
1065	 46.63	0	1185300..1186307	-	335	16330233	-	sll1306	-	hypothetical protein
1066	 44.37	0	1186311..1187198	-	295	16330234	-	sll1305	-	hypothetical protein
1067	 42.94	-1	1187219..1188082	-	287	16330235	-	sll1304	-	hypothetical protein
1068	 43.37	0	1188079..1188885	-	268	16330236	-	sll1785	-	hypothetical protein
1069	 43.16	-1	1189110..1189913	-	267	16330237	-	sll1784	-	hypothetical protein
1070	 40.77	-1	1189940..1190383	-	147	16330238	-	sll1783	-	hypothetical protein
1071	 47.27	0	1190867..1191433	+	188	16330239	-	slr1852	-	hypothetical protein
1072	 44.44	0	1191445..1191786	+	113	16330240	-	slr1853	-	hypothetical protein
1073	 44.72	0	1191856..1192452	+	198	16330241	-	slr1854	-	hypothetical protein
1074	 48.74	0	1192485..1194308	+	607	16330242	-	slr1855	-	hypothetical protein
1075	 51.52	0	1194314..1194643	+	109	16330243	-	slr1856	-	anti-sigma B factor antagonist
1076	 49.58	0	1194653..1196776	+	707	16330244	glgX	slr1857	-	glycogen operon protein; GlgX
1077	 37.31	-2	1196836..1197162	+	108	16330245	-	slr1859	-	hypothetical protein
1078	 38.74	-1	1197262..1199166	+	634	16330246	ICFG	slr1860	-	ICFG protein
1079	 38.89	-1	1199172..1199603	+	143	16330247	-	slr1861	-	hypothetical protein
1080	 39.72	-1	1199708..1200412	+	234	16330248	-	slr1862	-	hypothetical protein
1081	 32.35	-2	1200376..1201392	-	338	16330249	-	sll1780	-	transposase
1082	 36.09	-2	1201494..1203014	+	506	16330250	-	slr1863	-	hypothetical protein
1083	 40.43	-1	1203028..1204098	+	356	16330251	-	slr1864	-	hypothetical protein
1084	 40.38	-1	1204276..1205538	+	420	16330252	-	slr1865	-	hypothetical protein
1085	 39.02	-1	1205546..1206547	+	333	16330253	-	slr1866	-	hypothetical protein
1086	 55.68	+1	1206947..1207993	+	348	16330254	trpD	slr1867	-	anthranilate phosphoribosyltransferase
1087	 52.21	0	1208020..1208697	-	225	16330255	deoC	sll1776	-	deoxyribose-phosphate aldolase
1088	 50.86	0	1208749..1211202	-	817	16330256	-	sll1775	-	hypothetical protein
1089	 44.57	0	1211638..1212420	-	260	16330257	-	sll1774	-	hypothetical protein
1090	 45.85	0	1212600..1213358	+	252	16330258	-	slr1869	-	hypothetical protein
1091	 42.40	-1	1214188..1214937	+	249	16330259	-	slr1870	-	hypothetical protein
1092	 49.36	0	1215453..1216151	-	232	16330260	-	sll1773	-	hypothetical protein
1093	 47.64	0	1216281..1217168	+	295	16330261	-	slr1871	-	transcriptional regulator
1094	 51.32	0	1217156..1219624	-	822	16330262	mutS	sll1772	-	recombination and DNA strand exchange inhibitor protein
1095	 50.07	0	1219654..1220418	-	254	16330263	-	sll1771	-	hypothetical protein
1096	 49.72	0	1220473..1222230	-	585	16330264	-	sll1770	-	ABC1-like
1097	 54.09	+1	1222610..1222927	-	105	16330265	-	sll1769	-	hypothetical protein
1098	 56.41	+1	1222937..1223209	-	90	16330266	-	ssl3383	-	hypothetical protein
1099	 48.59	0	1223255..1223431	-	58	16330267	-	ssl3382	-	hypothetical protein
1100	 49.24	0	1223666..1224646	-	326	16330268	-	sll1768	-	OppB in a binding protein-dependent transport system
48.22	MEAN

4.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.