IslandPathversion 1.0

IslandPath Analysis: Synechococcus elongatus PCC 6301



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.98 STD DEV: 4.05
Synechococcus elongatus PCC 6301, complete genome - 1..2696255
2527 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
926	 57.34	0	1035595..1036452	+	285	56750935	menB	syc0926_d	-	naphthoate synthase
927	 58.95	0	1036449..1037381	-	310	56750936	-	syc0927_c	-	delta(24)-sterol C-methyltransferase
928	 57.26	0	1037678..1038028	+	116	56750937	-	syc0928_d	-	hypothetical protein
929	 59.75	0	1037997..1039673	+	558	56750938	-	syc0929_d	-	hypothetical protein
930	 56.13	0	1040050..1040457	+	135	56750939	-	syc0930_d	-	hypothetical protein
931	 60.85	+1	1040485..1041567	+	360	56750940	pfkA	syc0931_d	-	6-phosphofructokinase
932	 54.74	0	1041581..1041907	-	108	56750941	-	syc0932_c	-	hypothetical protein
933	 57.47	0	1041912..1042259	-	115	56750942	-	syc0933_c	-	hypothetical protein
934	 58.20	0	1042306..1042671	-	121	56750943	-	syc0934_c	-	hypothetical protein
935	 56.97	0	1043039..1044214	+	391	56750944	purT	syc0935_d	-	phosphoribosylglycinamide formyltransferase 2
936	 48.86	-1	1044296..1047025	-	909	56750945	valS	syc0936_c	-	valyl-tRNA synthetase
937	 53.12	0	1052573..1053340	+	255	56750946	-	syc0937_d	-	hypothetical protein
938	 56.35	0	1053491..1054711	+	406	56750947	-	syc0938_d	-	protease
939	 53.03	0	1054800..1055525	+	241	56750948	rpiA	syc0939_d	-	ribose-5-phosphate isomerase A
940	 57.63	0	1055662..1056756	-	364	56750949	chlI	syc0940_c	-	magnesium-chelatase subunit ChlI
941	 59.70	0	1056855..1057859	+	334	56750950	-	syc0941_d	-	hypothetical protein
942	 55.17	0	1057898..1058245	+	115	56750951	-	syc0942_d	-	hypothetical protein
943	 57.70	0	1058342..1060159	+	605	56750952	-	syc0943_d	-	penicillin-binding protein
944	 58.91	0	1060114..1061247	-	377	56750953	sqdX	syc0944_c	-	sulfolipid sulfoquinovosyldiacylglycerol biosynthesis protein
945	 54.34	0	1061263..1062471	-	402	56750954	sqdB	syc0945_c	-	sulfolipid biosynthesis protein
946	 54.39	0	1062565..1062735	-	56	56750955	-	syc0946_c	-	hypothetical protein
947	 59.49	0	1062819..1063724	-	301	56750956	thiG	syc0947_c	-	thiazole synthase
948	 56.38	0	1063902..1064465	+	187	56750957	-	syc0948_d	-	hypothetical protein
949	 58.24	0	1064437..1065267	-	276	56750958	-	syc0949_c	-	hypothetical protein
950	 57.36	0	1065724..1066185	+	153	56750959	-	syc0950_d	-	hypothetical protein
951	 53.42	0	1066182..1067555	+	457	56750960	melB	syc0951_d	-	sugar transporter
952	 58.41	0	1067658..1069001	+	447	56750961	dnaE	syc0952_d	-	DNA polymerase III subunit alpha
953	 52.78	0	1069226..1070161	+	311	56750962	rpoD4	syc0953_d	-	group2 RNA polymerase sigma factor RpoD4
954	 58.01	0	1070192..1071508	+	438	56750963	codA	syc0954_d	-	cytosine deaminase
955	 58.07	0	1071511..1072860	+	449	56750964	-	syc0955_d	-	hypothetical protein
956	 58.50	0	1072862..1073632	-	256	56750965	-	syc0956_c	-	hypothetical protein
957	 52.19	0	1073629..1074291	-	220	56750966	-	syc0957_c	-	hypothetical protein
958	 56.44	0	1074392..1075105	-	237	56750967	-	syc0958_c	-	ATP-binding protein of ABC transporter
959	 51.22	-1	1075225..1077225	+	666	56750968	uvrB	syc0959_d	-	excinuclease ABC subunit B
960	 50.22	-1	1077283..1077738	-	151	56750969	-	syc0960_c	-	hypothetical protein
961	 58.81	0	1077830..1078873	-	347	56750970	-	syc0961_c	-	hypothetical protein
962	 55.60	0	1078900..1079604	+	234	56750971	-	syc0962_d	-	ATP-binding protein of ABC transporter
963	 57.94	0	1079637..1080530	+	297	56750972	hslO	syc0963_d	-	Hsp33-like chaperonin
964	 58.86	0	1080582..1081196	-	204	56750973	-	syc0964_c	-	hypothetical protein
965	 54.20	0	1081660..1082373	+	237	56750974	srrB	syc0965_d	-	two-component response regulator
966	 52.64	0	1082370..1083089	-	239	56750975	-	syc0966_c	-	zinc metalloprotease
967	 56.14	0	1083194..1084285	-	363	56750976	-	syc0967_c	-	translation-associated GTPase
968	 60.61	+1	1084345..1085697	+	450	56750977	-	syc0968_d	-	hypothetical protein
969	 58.62	0	1085694..1086812	-	372	56750978	nfrC	syc0969_c	-	UDP-N-acetylglucosamine 2-epimerase
970	 56.77	0	1086918..1087382	-	154	56750979	-	syc0970_c	-	hypothetical protein
971	 58.59	0	1087844..1088227	-	127	56750980	-	syc0971_c	-	hypothetical protein
972	 54.86	0	1088236..1088997	-	253	56750981	-	syc0972_c	-	hypothetical protein
973	 59.52	0	1089098..1090258	+	386	56750982	-	syc0973_d	-	hypothetical protein
974	 48.43	-1	1090315..1090824	+	169	56750983	-	syc0974_d	-	hypothetical protein
975	 56.24	0	1090858..1093005	-	715	56750984	nhaS4	syc0975_c	-	Na+/H+ antiporter
976	 57.58	0	1093046..1093738	-	230	56750985	-	syc0976_c	-	hypothetical protein
977	 55.56	0	1093720..1093989	-	89	161621819	-	syc0977_c	-	YciI-like protein
978	 59.22	0	1094068..1094631	+	187	56750987	-	syc0978_d	-	hypothetical protein
979	 56.38	0	1094628..1095521	-	297	56750988	lipA	syc0979_c	-	lipoyl synthase
980	 50.22	-1	1095818..1096048	-	76	56750989	-	syc0980_c	-	hypothetical protein
981	 49.57	-1	1096052..1096513	-	153	56750990	-	syc0981_c	-	hypothetical protein
982	 56.00	0	1096527..1097276	-	249	56750991	-	syc0982_c	-	hypothetical protein
983	 58.69	0	1097372..1099378	-	668	56750992	tktA	syc0983_c	-	transketolase
984	 58.37	0	1099525..1100778	-	417	56750993	fabF	syc0984_c	-	3-oxoacyl-(acyl carrier protein) synthase II
985	 52.67	0	1100846..1101088	-	80	56750994	acpP	syc0985_c	-	acyl carrier protein
986	 57.32	0	1101547..1101792	+	81	56750995	psaC	syc0986_d	-	photosystem I subunit VII
987	 55.82	0	1101939..1103864	+	641	56750996	glmS	syc0987_d	-	D-fructose-6-phosphate amidotransferase
988	 44.30	-2	1103880..1104116	+	78	56750997	-	syc0988_d	-	hypothetical protein
989	 38.98	-2	1104113..1104466	+	117	56750998	-	syc0989_d	-	hypothetical protein
990	 53.24	0	1104704..1105567	-	287	56750999	-	syc0990_c	-	hypothetical protein
991	 58.91	0	1105592..1106545	-	317	56751000	-	syc0991_c	-	hypothetical protein
992	 57.54	0	1106549..1107337	-	262	56751001	devB	syc0992_c	-	6-phosphogluconolactonase
993	 55.51	0	1107538..1108290	+	250	56751002	-	syc0993_d	-	hypothetical protein
994	 50.90	-1	1108645..1109481	+	278	56751003	-	syc0994_d	-	hypothetical protein
995	 52.51	0	1109586..1110482	-	298	56751004	lacF	syc0995_c	-	permease protein of sugar ABC transporter
996	 57.00	0	1110547..1111653	+	368	56751005	aroB	syc0996_d	-	3-dehydroquinate synthase
997	 52.03	0	1111717..1112085	+	122	56751006	-	syc0997_d	-	hypothetical protein
998	 56.92	0	1112177..1112566	+	129	56751007	-	syc0998_d	-	hypothetical protein
999	 55.44	0	1113458..1114045	-	195	56751008	-	syc0999_c	-	hypothetical protein
1000	 57.94	0	1114051..1114692	-	213	56751009	-	syc1000_c	-	hypothetical protein
1001	 59.26	0	1114742..1115281	-	179	56751010	-	syc1001_c	-	hypothetical protein
1002	 54.12	0	1115324..1116487	-	387	56751011	-	syc1002_c	-	hypothetical protein
1003	 60.27	+1	1116547..1118874	+	775	56751012	recJ	syc1003_d	-	single-stranded DNA-specific exonuclease
1004	 58.58	0	1118996..1120318	+	440	56751013	ctpB	syc1004_d	-	carboxyl-terminal protease
1005	 58.39	0	1120315..1120737	+	140	56751014	-	syc1005_d	-	hypothetical protein
1006	 55.33	0	1120757..1121197	+	146	56751015	-	syc1006_d	-	hypothetical protein
1007	 57.20	0	1121251..1121979	+	242	56751016	-	syc1007_d	-	ATP-binding protein of ABC transporter
1008	 55.02	0	1122072..1123256	+	394	56751017	ycf84	syc1008_d	-	hypothetical protein
1009	 59.41	0	1123301..1124278	+	325	56751018	ccsA	syc1009_d	-	c-type cytochrome synthesis protein
1010	 57.76	0	1124300..1124950	+	216	56751019	-	syc1010_d	-	hydrolase, haloacid dehalogenase-like
1011	 59.07	0	1124947..1125420	-	157	56751020	-	syc1011_c	-	hypothetical protein
1012	 60.83	+1	1125459..1126589	-	376	56751021	-	syc1012_c	-	hypothetical protein
1013	 52.09	0	1126596..1127144	-	182	56751022	frr	syc1013_c	-	ribosome recycling factor
1014	 56.30	0	1127131..1127892	-	253	56751023	pyrH	syc1014_c	-	uridylate kinase
1015	 58.57	0	1128013..1129050	+	345	56751024	glpX	syc1015_d	-	fructose 1,6-bisphosphatase II
1016	 58.09	0	1129182..1130498	+	438	56751025	hemA	syc1016_d	-	glutamyl-tRNA reductase
1017	 55.99	0	1130498..1130806	+	102	56751026	-	syc1017_d	-	hypothetical protein
1018	 57.67	0	1130806..1131372	+	188	56751027	-	syc1018_d	-	hypothetical protein
1019	 59.75	0	1131397..1132047	+	216	56751028	-	syc1019_d	-	hypothetical protein
1020	 57.06	0	1132057..1132410	+	117	56751029	-	syc1020_d	-	hypothetical protein
1021	 57.08	0	1132453..1133505	+	350	56751030	-	syc1021_d	-	hypothetical protein
1022	 57.68	0	1133782..1136295	-	837	56751031	-	syc1022_c	-	mannose-1-phosphate guanyltransferase
1023	 54.24	0	1136376..1136552	+	58	56751032	-	syc1023_d	-	hypothetical protein
1024	 58.70	0	1136557..1137246	+	229	56751033	-	syc1024_d	-	hypothetical protein
1025	 56.59	0	1137354..1137899	+	181	56751034	-	syc1025_d	-	hypothetical protein
55.98	MEAN

4.05	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.