IslandPathversion 1.0

IslandPath Analysis: Synechococcus elongatus PCC 6301



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.98 STD DEV: 4.05
Synechococcus elongatus PCC 6301, complete genome - 1..2696255
2527 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
886	 57.39	0	988903..990195	-	430	56750895	eno	syc0886_c	-	phosphopyruvate hydratase
887	 58.45	0	990409..990822	+	137	56750896	gloA	syc0887_d	-	lactoylglutathione lyase
888	 58.63	0	990910..993597	+	895	56750897	clpB	syc0888_d	-	ATP-dependent Clp protease ATP-binding subunit ClpB
889	 50.00	-1	993702..993947	+	81	56750898	secE	syc0889_d	-	preprotein translocase subunit SecE
890	 54.44	0	993944..994573	+	209	56750899	nusG	syc0890_d	-	transcription antitermination protein NusG
891	 55.16	0	994581..995006	+	141	56750900	rplK	syc0891_d	-	50S ribosomal protein L11
892	 55.88	0	995081..995794	+	237	56750901	rplA	syc0892_d	-	50S ribosomal protein L1
893	 53.79	0	996023..996550	+	175	56750902	rplJ	syc0893_d	-	50S ribosomal protein L10
894	 54.01	0	996610..996996	+	128	56750903	rplL	syc0894_d	-	50S ribosomal protein L7/L12
895	 61.42	+1	997298..998440	-	380	56750904	-	syc0895_c	-	hypothetical protein
896	 57.84	0	998735..999595	-	286	56750905	-	syc0896_c	-	spermidine synthase
897	 57.12	0	999646..1000410	-	254	56750906	-	syc0897_c	-	hypothetical protein
898	 59.62	0	1000651..1002510	-	619	56750907	ilvD	syc0898_c	-	dihydroxy-acid dehydratase
899	 59.20	0	1002687..1004453	-	588	56750908	ycf45	syc0899_c	-	hypothetical protein
900	 60.34	+1	1004453..1005511	-	352	56750909	ldpA	syc0900_c	-	7Fe-8S cluster-binding motif-containing protein
901	 57.83	0	1005521..1006900	-	459	56750910	trxB	syc0901_c	-	thioredoxin reductase
902	 55.06	0	1006960..1008957	-	665	56750911	-	syc0902_c	-	ABC transporter ATP-binding protein
903	 60.81	+1	1008979..1010157	-	392	56750912	-	syc0903_c	-	hypothetical protein
904	 58.44	0	1010302..1011006	-	234	56750913	-	syc0904_c	-	hypothetical protein
905	 58.49	0	1011084..1011719	-	211	56750914	-	syc0905_c	-	hypothetical protein
906	 58.70	0	1011772..1013052	-	426	56750915	ahcY	syc0906_c	-	S-adenosyl-L-homocysteine hydrolase
907	 58.20	0	1013184..1013561	+	125	56750916	-	syc0907_d	-	hypothetical protein
908	 58.85	0	1013573..1014634	-	353	56750917	hrcA	syc0908_c	-	heat-inducible transcription repressor
909	 57.10	0	1014692..1015036	-	114	56750918	-	syc0909_c	-	hypothetical protein
910	 59.64	0	1015197..1016876	+	559	56750919	-	syc0910_d	-	hypothetical protein
911	 62.78	+1	1016880..1017368	+	162	56750920	-	syc0911_d	-	hypothetical protein
912	 57.70	0	1017482..1018663	+	393	56750921	gltA	syc0912_d	-	methylcitrate synthase
913	 60.73	+1	1018667..1021057	-	796	56750922	mutS	syc0913_c	-	recombination and DNA strand exchange inhibitor protein
914	 58.00	0	1021085..1022896	-	603	56750923	-	syc0914_c	-	hypothetical protein
915	 57.41	0	1023001..1024491	-	496	56750924	ndhD4	syc0915_c	-	NADPH dehydrogenase subunit 4
916	 56.49	0	1024575..1025036	-	153	56750925	-	syc0916_c	-	hypothetical protein
917	 54.74	0	1025168..1025494	-	108	56750926	-	syc0917_c	-	hypothetical protein
918	 57.56	0	1025508..1026188	+	226	56750927	aat	syc0918_d	-	leucyl/phenylalanyl-tRNA--protein transferase
919	 54.67	0	1026181..1027164	+	327	56750928	-	syc0919_d	-	hypothetical protein
920	 56.80	0	1027242..1027910	-	222	161621820	rpe	syc0920_c	-	ribulose-phosphate 3-epimerase
921	 56.07	0	1028125..1029417	+	430	56750930	glgC	syc0921_d	-	glucose-1-phosphate adenylyltransferase
922	 54.68	0	1029422..1030030	+	202	56750931	-	syc0922_d	-	hypothetical protein
923	 56.75	0	1030817..1032349	+	510	56750932	-	syc0923_d	-	serine/threonine kinase
924	 57.38	0	1032473..1033075	+	200	56750933	-	syc0924_d	-	transcriptional regulator
925	 59.17	0	1033404..1035176	-	590	56750934	-	syc0925_c	-	putative peptidase
926	 57.34	0	1035595..1036452	+	285	56750935	menB	syc0926_d	-	naphthoate synthase
927	 58.95	0	1036449..1037381	-	310	56750936	-	syc0927_c	-	delta(24)-sterol C-methyltransferase
928	 57.26	0	1037678..1038028	+	116	56750937	-	syc0928_d	-	hypothetical protein
929	 59.75	0	1037997..1039673	+	558	56750938	-	syc0929_d	-	hypothetical protein
930	 56.13	0	1040050..1040457	+	135	56750939	-	syc0930_d	-	hypothetical protein
931	 60.85	+1	1040485..1041567	+	360	56750940	pfkA	syc0931_d	-	6-phosphofructokinase
932	 54.74	0	1041581..1041907	-	108	56750941	-	syc0932_c	-	hypothetical protein
933	 57.47	0	1041912..1042259	-	115	56750942	-	syc0933_c	-	hypothetical protein
934	 58.20	0	1042306..1042671	-	121	56750943	-	syc0934_c	-	hypothetical protein
935	 56.97	0	1043039..1044214	+	391	56750944	purT	syc0935_d	-	phosphoribosylglycinamide formyltransferase 2
936	 48.86	-1	1044296..1047025	-	909	56750945	valS	syc0936_c	-	valyl-tRNA synthetase
937	 53.12	0	1052573..1053340	+	255	56750946	-	syc0937_d	-	hypothetical protein
938	 56.35	0	1053491..1054711	+	406	56750947	-	syc0938_d	-	protease
939	 53.03	0	1054800..1055525	+	241	56750948	rpiA	syc0939_d	-	ribose-5-phosphate isomerase A
940	 57.63	0	1055662..1056756	-	364	56750949	chlI	syc0940_c	-	magnesium-chelatase subunit ChlI
941	 59.70	0	1056855..1057859	+	334	56750950	-	syc0941_d	-	hypothetical protein
942	 55.17	0	1057898..1058245	+	115	56750951	-	syc0942_d	-	hypothetical protein
943	 57.70	0	1058342..1060159	+	605	56750952	-	syc0943_d	-	penicillin-binding protein
944	 58.91	0	1060114..1061247	-	377	56750953	sqdX	syc0944_c	-	sulfolipid sulfoquinovosyldiacylglycerol biosynthesis protein
945	 54.34	0	1061263..1062471	-	402	56750954	sqdB	syc0945_c	-	sulfolipid biosynthesis protein
946	 54.39	0	1062565..1062735	-	56	56750955	-	syc0946_c	-	hypothetical protein
947	 59.49	0	1062819..1063724	-	301	56750956	thiG	syc0947_c	-	thiazole synthase
948	 56.38	0	1063902..1064465	+	187	56750957	-	syc0948_d	-	hypothetical protein
949	 58.24	0	1064437..1065267	-	276	56750958	-	syc0949_c	-	hypothetical protein
950	 57.36	0	1065724..1066185	+	153	56750959	-	syc0950_d	-	hypothetical protein
951	 53.42	0	1066182..1067555	+	457	56750960	melB	syc0951_d	-	sugar transporter
952	 58.41	0	1067658..1069001	+	447	56750961	dnaE	syc0952_d	-	DNA polymerase III subunit alpha
953	 52.78	0	1069226..1070161	+	311	56750962	rpoD4	syc0953_d	-	group2 RNA polymerase sigma factor RpoD4
954	 58.01	0	1070192..1071508	+	438	56750963	codA	syc0954_d	-	cytosine deaminase
955	 58.07	0	1071511..1072860	+	449	56750964	-	syc0955_d	-	hypothetical protein
956	 58.50	0	1072862..1073632	-	256	56750965	-	syc0956_c	-	hypothetical protein
957	 52.19	0	1073629..1074291	-	220	56750966	-	syc0957_c	-	hypothetical protein
958	 56.44	0	1074392..1075105	-	237	56750967	-	syc0958_c	-	ATP-binding protein of ABC transporter
959	 51.22	-1	1075225..1077225	+	666	56750968	uvrB	syc0959_d	-	excinuclease ABC subunit B
960	 50.22	-1	1077283..1077738	-	151	56750969	-	syc0960_c	-	hypothetical protein
961	 58.81	0	1077830..1078873	-	347	56750970	-	syc0961_c	-	hypothetical protein
962	 55.60	0	1078900..1079604	+	234	56750971	-	syc0962_d	-	ATP-binding protein of ABC transporter
963	 57.94	0	1079637..1080530	+	297	56750972	hslO	syc0963_d	-	Hsp33-like chaperonin
964	 58.86	0	1080582..1081196	-	204	56750973	-	syc0964_c	-	hypothetical protein
965	 54.20	0	1081660..1082373	+	237	56750974	srrB	syc0965_d	-	two-component response regulator
966	 52.64	0	1082370..1083089	-	239	56750975	-	syc0966_c	-	zinc metalloprotease
967	 56.14	0	1083194..1084285	-	363	56750976	-	syc0967_c	-	translation-associated GTPase
968	 60.61	+1	1084345..1085697	+	450	56750977	-	syc0968_d	-	hypothetical protein
969	 58.62	0	1085694..1086812	-	372	56750978	nfrC	syc0969_c	-	UDP-N-acetylglucosamine 2-epimerase
970	 56.77	0	1086918..1087382	-	154	56750979	-	syc0970_c	-	hypothetical protein
971	 58.59	0	1087844..1088227	-	127	56750980	-	syc0971_c	-	hypothetical protein
972	 54.86	0	1088236..1088997	-	253	56750981	-	syc0972_c	-	hypothetical protein
973	 59.52	0	1089098..1090258	+	386	56750982	-	syc0973_d	-	hypothetical protein
974	 48.43	-1	1090315..1090824	+	169	56750983	-	syc0974_d	-	hypothetical protein
975	 56.24	0	1090858..1093005	-	715	56750984	nhaS4	syc0975_c	-	Na+/H+ antiporter
976	 57.58	0	1093046..1093738	-	230	56750985	-	syc0976_c	-	hypothetical protein
977	 55.56	0	1093720..1093989	-	89	161621819	-	syc0977_c	-	YciI-like protein
978	 59.22	0	1094068..1094631	+	187	56750987	-	syc0978_d	-	hypothetical protein
979	 56.38	0	1094628..1095521	-	297	56750988	lipA	syc0979_c	-	lipoyl synthase
980	 50.22	-1	1095818..1096048	-	76	56750989	-	syc0980_c	-	hypothetical protein
981	 49.57	-1	1096052..1096513	-	153	56750990	-	syc0981_c	-	hypothetical protein
982	 56.00	0	1096527..1097276	-	249	56750991	-	syc0982_c	-	hypothetical protein
983	 58.69	0	1097372..1099378	-	668	56750992	tktA	syc0983_c	-	transketolase
984	 58.37	0	1099525..1100778	-	417	56750993	fabF	syc0984_c	-	3-oxoacyl-(acyl carrier protein) synthase II
985	 52.67	0	1100846..1101088	-	80	56750994	acpP	syc0985_c	-	acyl carrier protein
55.98	MEAN

4.05	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.