IslandPathversion 1.0

IslandPath Analysis: Synechococcus elongatus PCC 6301



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.98 STD DEV: 4.05
Synechococcus elongatus PCC 6301, complete genome - 1..2696255
2527 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
770	 58.80	0	861831..862478	-	215	56750779	-	syc0770_c	-	DNA-damage-inducible protein
771	 50.00	-1	863273..863512	+	79	56750780	-	syc0771_d	-	hypothetical protein
772	 49.37	-1	863481..863879	+	132	56750781	-	syc0772_d	-	transcriptional regulator
773	 43.30	-2	864307..864858	+	183	56750782	-	syc0773_d	-	hypothetical protein
774	 37.86	-2	865361..866089	+	242	56750783	-	syc0774_d	-	hypothetical protein
775	 33.15	-2	866917..867447	-	176	56750784	-	syc0775_c	-	hypothetical protein
776	 35.96	-2	867614..868297	-	227	56750785	-	syc0776_c	-	hypothetical protein
777	 60.65	+1	870001..870465	-	154	56750786	-	syc0777_c	-	chain A, D20c mutant of T4 lysozyme
778	 60.45	+1	870862..871440	-	192	56750787	-	syc0778_c	-	hypothetical protein
779	 62.65	+1	871710..873152	-	480	56750788	-	syc0779_c	-	phage late control gene D protein GPD
780	 62.44	+1	873149..873361	-	70	56750789	-	syc0780_c	-	hypothetical protein
781	 67.75	+2	873361..874281	-	306	56750790	-	syc0781_c	-	hypothetical protein
782	 63.58	+1	874281..877133	-	950	56750791	-	syc0782_c	-	putative bacteriophage protein
783	 57.74	0	877551..878054	-	167	56750792	-	syc0783_c	-	phage tail tube protein FII
784	 62.95	+1	878051..879475	-	474	56750793	-	syc0784_c	-	hypothetical protein
785	 65.48	+2	879583..880089	-	168	56750794	-	syc0785_c	-	hypothetical protein
786	 66.75	+2	880093..881256	-	387	56750795	-	syc0786_c	-	hypothetical protein
787	 62.53	+1	881261..882712	-	483	56750796	-	syc0787_c	-	hypothetical protein
788	 60.96	+1	882716..884731	-	671	56750797	-	syc0788_c	-	hypothetical protein
789	 63.37	+1	884735..885220	-	161	56750798	-	syc0789_c	-	hypothetical protein
790	 60.95	+1	885319..886158	-	279	56750799	-	syc0790_c	-	hypothetical protein
791	 63.21	+1	886155..886994	-	279	56750800	-	syc0791_c	-	GPJ of phage P2
792	 62.61	+1	886991..887335	-	114	56750801	-	syc0792_c	-	hypothetical protein
793	 61.85	+1	887335..887604	-	89	56750802	-	syc0793_c	-	hypothetical protein
794	 63.64	+1	888495..889154	-	219	56750803	-	syc0794_c	-	hypothetical protein
795	 60.26	+1	889126..889437	-	103	56750804	-	syc0795_c	-	electron transfer protein
796	 60.61	+1	889443..889772	-	109	56750805	-	syc0796_c	-	hypothetical protein
797	 57.23	0	889820..891694	-	624	56750806	-	syc0797_c	-	hypothetical protein
798	 60.31	+1	891717..893180	-	487	56750807	-	syc0798_c	-	hypothetical protein
799	 57.62	0	893180..893389	-	69	56750808	-	syc0799_c	-	hypothetical protein
800	 62.15	+1	893517..895397	-	626	56750809	-	syc0800_c	-	putative phage terminase large subunit
801	 60.00	0	895706..896245	-	179	56750810	-	syc0801_c	-	hypothetical protein
802	 59.08	0	896460..897065	-	201	56750811	-	syc0802_c	-	hypothetical protein
803	 55.86	0	897090..897635	-	181	56750812	-	syc0803_c	-	hypothetical protein
804	 61.89	+1	897905..900457	-	850	56750813	-	syc0804_c	-	hypothetical protein
805	 59.23	0	900441..900803	-	120	56750814	-	syc0805_c	-	hypothetical protein
806	 60.57	+1	900796..902205	-	469	56750815	-	syc0806_c	-	putative helicase
807	 53.60	0	902424..902867	-	147	56750816	-	syc0807_c	-	hypothetical protein
808	 51.75	-1	902866..903549	+	227	56750817	-	syc0808_d	-	hypothetical protein
809	 57.80	0	903845..904927	+	360	56750818	-	syc0809_d	-	hypothetical protein
810	 51.62	-1	905481..905819	+	112	56750819	-	syc0810_d	-	hypothetical protein
811	 54.96	0	906039..906542	+	167	56750820	-	syc0811_d	-	hypothetical protein
812	 58.87	0	906539..907192	+	217	56750821	-	syc0812_d	-	hypothetical protein
813	 57.71	0	907219..907743	+	174	56750822	dcd	syc0813_d	-	dCTP deaminase
814	 59.48	0	908324..909367	-	347	56750823	-	syc0814_c	-	hypothetical protein
815	 58.92	0	909691..910878	-	395	56750824	murZ	syc0815_c	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
816	 58.82	0	911420..913126	+	568	56750825	amiA	syc0816_d	-	N-acetylmuramoyl-L-alanine amidase
817	 55.88	0	913197..914420	+	407	56750826	ispG	syc0817_d	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
818	 53.76	0	914520..915797	+	425	56750827	-	syc0818_d	-	periplasmic carboxyl-terminal protease
819	 58.11	0	915973..919266	-	1097	56750828	carB	syc0819_c	-	carbamoyl phosphate synthase large subunit
820	 54.89	0	919332..920027	+	231	56750829	-	syc0820_d	-	hypothetical protein
821	 56.06	0	920030..920359	-	109	56750830	-	syc0821_c	-	hypothetical protein
822	 53.25	0	920411..922162	-	583	56750831	-	syc0822_c	-	hypothetical protein
823	 58.37	0	922229..923698	+	489	56750832	ldcC	syc0823_d	-	lysine decarboxylase
824	 59.51	0	923679..924293	+	204	56750833	cobL	syc0824_d	-	precorrin-6B methylase
825	 51.73	-1	924300..924935	-	211	56750834	-	syc0825_c	-	hypothetical protein
826	 45.13	-2	924922..925557	-	211	56750835	act	syc0826_c	-	acetyltransferase
827	 55.61	0	925590..926810	-	406	56750836	smf	syc0827_c	-	DNA processing protein
828	 58.56	0	926825..927613	-	262	56750837	-	syc0828_c	-	hypothetical protein
829	 58.23	0	927610..928071	-	153	56750838	-	syc0829_c	-	hypothetical protein
830	 55.52	0	928213..929046	+	277	56750839	-	syc0830_d	-	hypothetical protein
831	 52.78	0	929144..929251	-	35	56750840	psbM	syc0831_c	-	photosystem II reaction center protein M
832	 57.01	0	929351..929785	-	144	56750841	-	syc0832_c	-	ferredoxin
833	 57.76	0	930122..931648	+	508	56750842	psbB	syc0833_d	-	photosystem II core light harvesting protein
834	 51.04	-1	931725..931820	+	31	56750843	psbT	syc0834_d	-	photosystem II reaction center protein T
835	 54.04	0	932030..932536	+	168	56750844	-	syc0835_d	-	transcriptional regulator NrdR
836	 55.19	0	932814..933737	+	307	56750845	rps1	syc0836_d	-	30S ribosomal protein S1
837	 57.89	0	933838..934623	+	261	56750846	-	syc0837_d	-	hypothetical protein
838	 58.92	0	934685..935239	+	184	56750847	-	syc0838_d	-	hypothetical protein
839	 54.35	0	935715..935990	+	91	56750848	clpS	syc0839_d	-	ATP-dependent Clp protease adaptor protein ClpS
840	 60.19	+1	936404..936820	+	138	56750849	-	syc0840_d	-	hypothetical protein
841	 59.00	0	936811..937149	-	112	56750850	-	syc0841_c	-	transcriptional regulator
842	 59.94	0	937124..938743	-	539	56750851	-	syc0842_c	-	hypothetical protein
843	 57.11	0	938733..939893	-	386	56750852	-	syc0843_c	-	FO synthase subunit 2
844	 58.39	0	940323..941990	-	555	56750853	groEL	syc0844_c	-	chaperonin GroEL
845	 58.13	0	942097..942846	-	249	56750854	fabG	syc0845_c	-	3-oxoacyl-[acyl-carrier protein] reductase
846	 56.04	0	942904..943929	-	341	56750855	-	syc0846_c	-	potassium channel protein
847	 57.60	0	943966..944925	-	319	56750856	-	syc0847_c	-	hypothetical protein
848	 57.94	0	945009..945707	+	232	56750857	ispD	syc0848_d	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
849	 47.79	-2	945722..946537	-	271	56750858	-	syc0849_c	-	sterol C5-desaturase
850	 57.72	0	946763..947086	-	107	56750859	rbp1	syc0850_c	-	RRM type RNA-binding protein
851	 55.82	0	947469..948104	-	211	56750860	rnd	syc0851_c	-	ribonuclease D
852	 55.03	0	948343..948789	+	148	56750861	pex	syc0852_d	-	circadian period extender gene
853	 57.17	0	948752..949972	-	406	56750862	-	syc0853_c	-	hypothetical protein
854	 56.51	0	950053..950574	+	173	56750863	-	syc0854_d	-	hypothetical protein
855	 59.28	0	950571..951599	-	342	56750864	hemF	syc0855_c	-	coproporphyrinogen III oxidase
856	 54.94	0	951940..953022	-	360	56750865	mutT	syc0856_c	-	mutator MutT protein
857	 55.05	0	953022..954002	-	326	56750866	rpoD3	syc0857_c	-	RNA polymerase sigma factor SigD
858	 58.68	0	954218..954718	-	166	56750867	-	syc0858_c	-	hypothetical protein
859	 57.72	0	954734..955750	-	338	56750868	pyrB	syc0859_c	-	aspartate carbamoyltransferase catalytic subunit
860	 60.00	0	955747..956346	-	199	56750869	mpg	syc0860_c	-	N-methylpurine-DNA glycosirase
861	 54.49	0	956575..956886	-	103	56750870	-	syc0861_c	-	hypothetical protein
862	 59.58	0	957110..957730	-	206	56750871	-	syc0862_c	-	hypothetical protein
863	 57.83	0	957893..958639	+	248	56750872	-	syc0863_d	-	hypothetical protein
864	 52.77	0	958647..959999	-	450	56750873	-	syc0864_c	-	hypothetical protein
865	 60.24	+1	959996..961894	-	632	56750874	cya2	syc0865_c	-	guanylyl cyclase
866	 57.79	0	962014..962937	-	307	56750875	-	syc0866_c	-	hypothetical protein
867	 60.01	0	962997..964679	-	560	56750876	-	syc0867_c	-	hypothetical protein
868	 62.01	+1	964618..965454	-	278	56750877	tyrA	syc0868_c	-	arogenate dehydrogenase
869	 60.23	+1	965512..967017	+	501	56750878	-	syc0869_d	-	carboxyl-terminal protease
55.98	MEAN

4.05	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.