IslandPathversion 1.0

IslandPath Analysis: Synechococcus elongatus PCC 6301



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.98 STD DEV: 4.05
Synechococcus elongatus PCC 6301, complete genome - 1..2696255
2527 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
722	 49.62	-1	808145..808537	+	130	56750731	-	syc0722_d	-	ferric uptake regulation protein
723	 51.42	-1	808615..810687	+	690	56750732	-	syc0723_d	-	hypothetical protein
724	 56.01	0	810772..811503	-	243	56750733	livF	syc0724_c	-	branched-chain amino acid transport system ATP-binding protein
725	 56.89	0	811510..811734	-	74	56750734	-	syc0725_c	-	ferredoxin-like protein
726	 61.20	+1	811767..813029	-	420	56750735	hisZ	syc0726_c	-	ATP phosphoribosyltransferase regulatory subunit
727	 56.89	0	813055..813975	-	306	56750736	-	syc0727_c	-	DnaJ-class molecular chaperone
728	 54.86	0	814100..815683	-	527	56750737	-	syc0728_c	-	Na+/H+ antiporter
729	 59.11	0	816070..817671	-	533	56750738	-	syc0729_c	-	hypothetical protein
730	 53.62	0	817890..820019	+	709	56750739	sps	syc0730_d	-	sucrose phosphate synthase
731	 51.55	-1	820191..821030	-	279	56750740	-	syc0731_c	-	hypothetical protein
732	 59.97	0	821044..821775	-	243	56750741	-	syc0732_c	-	hypothetical protein
733	 57.83	0	821775..822521	-	248	56750742	-	syc0733_c	-	hypothetical protein
734	 59.89	0	822521..823582	-	353	56750743	pdxA	syc0734_c	-	4-hydroxythreonine-4-phosphate dehydrogenase
735	 55.68	0	823581..824363	+	260	56750744	-	syc0735_d	-	hypothetical protein
736	 52.94	0	824366..824518	-	50	56750745	-	syc0736_c	-	hypothetical protein
737	 56.23	0	825058..825747	-	229	56750746	sodB	syc0737_c	-	superoxide dismutase
738	 58.75	0	825822..826415	+	197	56750747	-	syc0738_d	-	hypothetical protein
739	 56.44	0	826486..828342	+	618	56750748	-	syc0739_d	-	hypothetical protein
740	 58.64	0	828066..828551	+	161	56750749	ruvC	syc0740_d	-	Holliday junction resolvase
741	 61.54	+1	829150..829695	-	181	56750750	-	syc0741_c	-	hypothetical protein
742	 59.97	0	829823..830434	+	203	56750751	-	syc0742_d	-	hypothetical protein
743	 56.59	0	830637..831410	+	257	56750752	-	syc0743_d	-	chloroplast membrane-associated 30 kD protein
744	 49.93	-1	831609..832277	+	222	56750753	-	syc0744_d	-	hypothetical protein
745	 58.91	0	832439..833779	+	446	56750754	-	syc0745_d	-	hypothetical protein
746	 61.19	+1	833803..834897	+	364	56750755	pcnB	syc0746_d	-	polyA polymerase
747	 57.11	0	835160..835588	+	142	56750756	rbp3	syc0747_d	-	RRM type RNA-binding protein
748	 54.94	0	835703..836026	+	107	56750757	-	syc0748_d	-	hypothetical protein
749	 58.24	0	836122..836916	+	264	56750758	gst1	syc0749_d	-	glutathione S-transferase
750	 55.75	0	836985..837863	-	292	56750759	phoA	syc0750_c	-	putative purple acid phosphatase
751	 51.44	-1	837928..838794	-	288	56750760	-	syc0751_c	-	hypothetical protein
752	 59.00	0	838905..840938	-	677	56750761	pbpA	syc0752_c	-	penicillin binding protein 1A
753	 62.58	+1	841021..841338	-	105	56750762	-	syc0753_c	-	hypothetical protein
754	 55.40	0	841624..842280	+	218	56750763	hisG	syc0754_d	-	ATP phosphoribosyltransferase catalytic subunit
755	 54.03	0	842313..844109	+	598	56750764	-	syc0755_d	-	ATP-binding protein of ABC transporter
756	 58.95	0	844349..846913	+	854	56750765	ppsA	syc0756_d	-	phosphoenolpyruvate synthase
757	 55.90	0	846910..848283	+	457	56750766	-	syc0757_d	-	serine/threonine kinase
758	 59.18	0	848275..850824	-	849	56750767	-	syc0758_c	-	hypothetical protein
759	 59.16	0	851441..852199	+	252	56750768	folD	syc0759_d	-	FolD bifunctional protein
760	 57.62	0	852242..853147	+	301	56750769	crtE	syc0760_d	-	geranylgeranyl pyrophosphate synthase
761	 59.17	0	853147..853626	+	159	56750770	-	syc0761_d	-	hypothetical protein
762	 57.88	0	853765..854652	-	295	56750771	-	syc0762_c	-	esterase
763	 55.13	0	854644..855276	+	210	56750772	ycf52	syc0763_d	-	hypothetical protein
764	 56.06	0	855291..855884	+	197	56750773	-	syc0764_d	-	hypothetical protein
765	 58.11	0	856014..857228	+	404	56750774	-	syc0765_d	-	hypothetical protein
766	 56.57	0	857225..858739	-	504	56750775	-	syc0766_c	-	hypothetical protein
767	 55.81	0	858740..859651	-	303	56750776	-	syc0767_c	-	hypothetical protein
768	 57.16	0	859690..860478	-	262	56750777	-	syc0768_c	-	hypothetical protein
769	 60.64	+1	861021..861617	-	198	56750778	-	syc0769_c	-	hypothetical protein
770	 58.80	0	861831..862478	-	215	56750779	-	syc0770_c	-	DNA-damage-inducible protein
771	 50.00	-1	863273..863512	+	79	56750780	-	syc0771_d	-	hypothetical protein
772	 49.37	-1	863481..863879	+	132	56750781	-	syc0772_d	-	transcriptional regulator
773	 43.30	-2	864307..864858	+	183	56750782	-	syc0773_d	-	hypothetical protein
774	 37.86	-2	865361..866089	+	242	56750783	-	syc0774_d	-	hypothetical protein
775	 33.15	-2	866917..867447	-	176	56750784	-	syc0775_c	-	hypothetical protein
776	 35.96	-2	867614..868297	-	227	56750785	-	syc0776_c	-	hypothetical protein
777	 60.65	+1	870001..870465	-	154	56750786	-	syc0777_c	-	chain A, D20c mutant of T4 lysozyme
778	 60.45	+1	870862..871440	-	192	56750787	-	syc0778_c	-	hypothetical protein
779	 62.65	+1	871710..873152	-	480	56750788	-	syc0779_c	-	phage late control gene D protein GPD
780	 62.44	+1	873149..873361	-	70	56750789	-	syc0780_c	-	hypothetical protein
781	 67.75	+2	873361..874281	-	306	56750790	-	syc0781_c	-	hypothetical protein
782	 63.58	+1	874281..877133	-	950	56750791	-	syc0782_c	-	putative bacteriophage protein
783	 57.74	0	877551..878054	-	167	56750792	-	syc0783_c	-	phage tail tube protein FII
784	 62.95	+1	878051..879475	-	474	56750793	-	syc0784_c	-	hypothetical protein
785	 65.48	+2	879583..880089	-	168	56750794	-	syc0785_c	-	hypothetical protein
786	 66.75	+2	880093..881256	-	387	56750795	-	syc0786_c	-	hypothetical protein
787	 62.53	+1	881261..882712	-	483	56750796	-	syc0787_c	-	hypothetical protein
788	 60.96	+1	882716..884731	-	671	56750797	-	syc0788_c	-	hypothetical protein
789	 63.37	+1	884735..885220	-	161	56750798	-	syc0789_c	-	hypothetical protein
790	 60.95	+1	885319..886158	-	279	56750799	-	syc0790_c	-	hypothetical protein
791	 63.21	+1	886155..886994	-	279	56750800	-	syc0791_c	-	GPJ of phage P2
792	 62.61	+1	886991..887335	-	114	56750801	-	syc0792_c	-	hypothetical protein
793	 61.85	+1	887335..887604	-	89	56750802	-	syc0793_c	-	hypothetical protein
794	 63.64	+1	888495..889154	-	219	56750803	-	syc0794_c	-	hypothetical protein
795	 60.26	+1	889126..889437	-	103	56750804	-	syc0795_c	-	electron transfer protein
796	 60.61	+1	889443..889772	-	109	56750805	-	syc0796_c	-	hypothetical protein
797	 57.23	0	889820..891694	-	624	56750806	-	syc0797_c	-	hypothetical protein
798	 60.31	+1	891717..893180	-	487	56750807	-	syc0798_c	-	hypothetical protein
799	 57.62	0	893180..893389	-	69	56750808	-	syc0799_c	-	hypothetical protein
800	 62.15	+1	893517..895397	-	626	56750809	-	syc0800_c	-	putative phage terminase large subunit
801	 60.00	0	895706..896245	-	179	56750810	-	syc0801_c	-	hypothetical protein
802	 59.08	0	896460..897065	-	201	56750811	-	syc0802_c	-	hypothetical protein
803	 55.86	0	897090..897635	-	181	56750812	-	syc0803_c	-	hypothetical protein
804	 61.89	+1	897905..900457	-	850	56750813	-	syc0804_c	-	hypothetical protein
805	 59.23	0	900441..900803	-	120	56750814	-	syc0805_c	-	hypothetical protein
806	 60.57	+1	900796..902205	-	469	56750815	-	syc0806_c	-	putative helicase
807	 53.60	0	902424..902867	-	147	56750816	-	syc0807_c	-	hypothetical protein
808	 51.75	-1	902866..903549	+	227	56750817	-	syc0808_d	-	hypothetical protein
809	 57.80	0	903845..904927	+	360	56750818	-	syc0809_d	-	hypothetical protein
810	 51.62	-1	905481..905819	+	112	56750819	-	syc0810_d	-	hypothetical protein
811	 54.96	0	906039..906542	+	167	56750820	-	syc0811_d	-	hypothetical protein
812	 58.87	0	906539..907192	+	217	56750821	-	syc0812_d	-	hypothetical protein
813	 57.71	0	907219..907743	+	174	56750822	dcd	syc0813_d	-	dCTP deaminase
814	 59.48	0	908324..909367	-	347	56750823	-	syc0814_c	-	hypothetical protein
815	 58.92	0	909691..910878	-	395	56750824	murZ	syc0815_c	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
816	 58.82	0	911420..913126	+	568	56750825	amiA	syc0816_d	-	N-acetylmuramoyl-L-alanine amidase
817	 55.88	0	913197..914420	+	407	56750826	ispG	syc0817_d	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
818	 53.76	0	914520..915797	+	425	56750827	-	syc0818_d	-	periplasmic carboxyl-terminal protease
819	 58.11	0	915973..919266	-	1097	56750828	carB	syc0819_c	-	carbamoyl phosphate synthase large subunit
820	 54.89	0	919332..920027	+	231	56750829	-	syc0820_d	-	hypothetical protein
821	 56.06	0	920030..920359	-	109	56750830	-	syc0821_c	-	hypothetical protein
55.98	MEAN

4.05	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.