IslandPathversion 1.0

IslandPath Analysis: Synechococcus elongatus PCC 6301



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.98 STD DEV: 4.05
Synechococcus elongatus PCC 6301, complete genome - 1..2696255
2527 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
656	 56.67	0	729939..731168	+	409	56750665	tuf	syc0656_d	-	elongation factor Tu
657	 56.60	0	731242..731559	+	105	56750666	rpsJ	syc0657_d	-	30S ribosomal protein S10
658	 53.27	0	731769..732425	+	218	56750667	lon	syc0658_d	-	ATP-dependent Lon protease
659	 58.08	0	732438..733334	-	298	56750668	pheA	syc0659_c	-	prephenate dehydratase
660	 53.23	0	733393..733950	+	185	56750669	-	syc0660_d	-	hypothetical protein
661	 58.80	0	733973..734620	-	215	56750670	rnhB	syc0661_c	-	ribonuclease HII
662	 59.09	0	734604..737030	-	808	56750671	rne	syc0662_c	-	ribonuclease E
663	 59.18	0	737380..739998	-	872	56750672	-	syc0663_c	-	hypothetical protein
664	 58.38	0	740190..742868	-	892	56750673	alaS	syc0664_c	-	alanyl-tRNA synthetase
665	 57.74	0	742909..743412	+	167	56750674	-	syc0665_d	-	hypothetical protein
666	 56.99	0	743416..746475	+	1019	56750675	-	syc0666_d	-	putative SNF2 helicase
667	 39.21	-2	746669..747757	+	362	56750676	-	syc0667_d	-	hypothetical protein
668	 52.50	0	747925..748503	-	192	56750677	-	syc0668_c	-	hypothetical protein
669	 40.00	-2	748505..748759	+	84	56750678	-	syc0669_d	-	hypothetical protein
670	 44.74	-2	748752..748979	+	75	56750679	-	syc0670_d	-	hypothetical protein
671	 52.45	0	749013..749603	-	196	56750680	-	syc0671_c	-	hypothetical protein
672	 56.95	0	749612..751360	-	582	56750681	-	syc0672_c	-	hypothetical protein
673	 57.36	0	751361..751618	-	85	56750682	-	syc0673_c	-	hypothetical protein
674	 62.71	+1	751745..752326	-	193	56750683	-	syc0674_c	-	hypothetical protein
675	 52.44	0	752389..752880	-	163	56750684	-	syc0675_c	-	nucleotide-binding protein
676	 56.26	0	752953..753471	-	172	56750685	-	syc0676_c	-	hypothetical protein
677	 58.04	0	753658..754839	-	393	56750686	-	syc0677_c	-	hypothetical protein
678	 52.38	0	754893..755270	-	125	56750687	-	syc0678_c	-	hypothetical protein
679	 54.65	0	755397..756686	+	429	56750688	-	syc0679_d	-	bifunctional sterol desaturase/short chain dehydrogenase
680	 46.98	-2	756920..757879	-	319	56750689	-	syc0680_c	-	hypothetical protein
681	 48.32	-1	757890..760745	-	951	56750690	-	syc0681_c	-	two-component hybrid sensor and regulator
682	 50.41	-1	760754..764974	-	1406	56750691	pixJ	syc0682_c	-	methyl-accepting chemotaxis protein
683	 49.90	-1	765046..765552	-	168	56750692	-	syc0683_c	-	hypothetical protein
684	 46.83	-2	765572..765934	-	120	56750693	-	syc0684_c	-	CheY family two-component response regulator
685	 43.10	-2	765979..767238	-	419	56750694	pixG	syc0685_c	-	two-component response regulator rre36-like protein
686	 56.99	0	768238..770634	-	798	56750695	-	syc0686_c	-	hypothetical protein
687	 55.91	0	770762..771997	-	411	56750696	aspB	syc0687_c	-	L,L-diaminopimelate aminotransferase
688	 54.51	0	771984..772460	-	158	56750697	-	syc0688_c	-	pseudo transposase
689	 56.66	0	772609..773667	-	352	56750698	purM	syc0689_c	-	phosphoribosylaminoimidazole synthetase
690	 54.73	0	774188..774388	+	66	56750699	-	syc0690_d	-	hypothetical protein
691	 55.27	0	774458..775045	+	195	56750700	-	syc0691_d	-	hypothetical protein
692	 56.71	0	775520..778531	+	1003	56750701	uvrA	syc0692_d	-	excinuclease ABC subunit A
693	 54.54	0	778635..779747	+	370	56750702	pilT3	syc0693_d	-	twitching mobility protein
694	 58.12	0	779786..780604	+	272	56750703	-	syc0694_d	-	hypothetical protein
695	 53.63	0	780788..781186	-	132	56750704	-	syc0695_c	-	hypothetical protein
696	 59.34	0	781223..781768	+	181	56750705	-	syc0696_d	-	hypothetical protein
697	 52.55	0	781932..782363	+	143	56750706	-	syc0697_d	-	hypothetical protein
698	 55.63	0	782462..783802	+	446	56750707	gor	syc0698_d	-	glutathione reductase
699	 57.49	0	783856..785196	-	446	56750708	-	syc0699_c	-	hypothetical protein
700	 50.93	-1	785394..785876	+	160	56750709	-	syc0700_d	-	hypothetical protein
701	 56.02	0	785913..786917	+	334	56750710	merR	syc0701_d	-	aliphatic nitrilase
702	 59.84	0	786910..788007	+	365	56750711	-	syc0702_d	-	hypothetical protein
703	 56.99	0	788038..788688	+	216	56750712	-	syc0703_d	-	hypothetical protein
704	 57.82	0	788685..789701	+	338	56750713	-	syc0704_d	-	hypothetical protein
705	 57.80	0	790079..791206	-	375	56750714	ruvB	syc0705_c	-	Holliday junction DNA helicase B
706	 52.73	0	791632..792291	-	219	56750715	-	syc0706_c	-	hypothetical protein
707	 57.78	0	792692..793771	-	359	56750716	-	syc0707_c	-	hypothetical protein
708	 56.00	0	794244..794468	+	74	56750717	-	syc0708_d	-	pseudo transposase
709	 55.10	0	794863..795519	+	218	56750718	-	syc0709_d	-	hypothetical protein
710	 55.00	0	795538..796926	-	462	56750719	asnC	syc0710_c	-	asparaginyl-tRNA synthetase
711	 55.83	0	797627..797995	+	122	56750720	-	syc0711_d	-	hypothetical protein
712	 52.15	0	798065..799111	+	348	56750721	cobW	syc0712_d	-	cobalamin biosynthesis protein CobW
713	 53.21	0	799240..800175	-	311	56750722	-	syc0713_c	-	hypothetical protein
714	 55.15	0	800175..800912	+	245	56750723	-	syc0714_d	-	hypothetical protein
715	 54.66	0	800973..802679	-	568	56750724	-	syc0715_c	-	hypothetical protein
716	 54.50	0	802654..803697	-	347	56750725	-	syc0716_c	-	hypothetical protein
717	 60.72	+1	803779..804804	-	341	56750726	appB	syc0717_c	-	oligopeptide ABC transporter permease protein
718	 56.99	0	804791..806392	-	533	56750727	ddpA	syc0718_c	-	periplasmic oligopeptide-binding
719	 60.86	+1	806474..806869	-	131	56750728	-	syc0719_c	-	hypothetical protein
720	 60.21	+1	806982..807647	-	221	56750729	purL	syc0720_c	-	phosphoribosyl formylglycinamidine synthase
721	 57.33	0	807644..807868	-	74	56750730	-	syc0721_c	-	phosphoribosylformylglycinamidine synthase subunit PurS
722	 49.62	-1	808145..808537	+	130	56750731	-	syc0722_d	-	ferric uptake regulation protein
723	 51.42	-1	808615..810687	+	690	56750732	-	syc0723_d	-	hypothetical protein
724	 56.01	0	810772..811503	-	243	56750733	livF	syc0724_c	-	branched-chain amino acid transport system ATP-binding protein
725	 56.89	0	811510..811734	-	74	56750734	-	syc0725_c	-	ferredoxin-like protein
726	 61.20	+1	811767..813029	-	420	56750735	hisZ	syc0726_c	-	ATP phosphoribosyltransferase regulatory subunit
727	 56.89	0	813055..813975	-	306	56750736	-	syc0727_c	-	DnaJ-class molecular chaperone
728	 54.86	0	814100..815683	-	527	56750737	-	syc0728_c	-	Na+/H+ antiporter
729	 59.11	0	816070..817671	-	533	56750738	-	syc0729_c	-	hypothetical protein
730	 53.62	0	817890..820019	+	709	56750739	sps	syc0730_d	-	sucrose phosphate synthase
731	 51.55	-1	820191..821030	-	279	56750740	-	syc0731_c	-	hypothetical protein
732	 59.97	0	821044..821775	-	243	56750741	-	syc0732_c	-	hypothetical protein
733	 57.83	0	821775..822521	-	248	56750742	-	syc0733_c	-	hypothetical protein
734	 59.89	0	822521..823582	-	353	56750743	pdxA	syc0734_c	-	4-hydroxythreonine-4-phosphate dehydrogenase
735	 55.68	0	823581..824363	+	260	56750744	-	syc0735_d	-	hypothetical protein
736	 52.94	0	824366..824518	-	50	56750745	-	syc0736_c	-	hypothetical protein
737	 56.23	0	825058..825747	-	229	56750746	sodB	syc0737_c	-	superoxide dismutase
738	 58.75	0	825822..826415	+	197	56750747	-	syc0738_d	-	hypothetical protein
739	 56.44	0	826486..828342	+	618	56750748	-	syc0739_d	-	hypothetical protein
740	 58.64	0	828066..828551	+	161	56750749	ruvC	syc0740_d	-	Holliday junction resolvase
741	 61.54	+1	829150..829695	-	181	56750750	-	syc0741_c	-	hypothetical protein
742	 59.97	0	829823..830434	+	203	56750751	-	syc0742_d	-	hypothetical protein
743	 56.59	0	830637..831410	+	257	56750752	-	syc0743_d	-	chloroplast membrane-associated 30 kD protein
744	 49.93	-1	831609..832277	+	222	56750753	-	syc0744_d	-	hypothetical protein
745	 58.91	0	832439..833779	+	446	56750754	-	syc0745_d	-	hypothetical protein
746	 61.19	+1	833803..834897	+	364	56750755	pcnB	syc0746_d	-	polyA polymerase
747	 57.11	0	835160..835588	+	142	56750756	rbp3	syc0747_d	-	RRM type RNA-binding protein
748	 54.94	0	835703..836026	+	107	56750757	-	syc0748_d	-	hypothetical protein
749	 58.24	0	836122..836916	+	264	56750758	gst1	syc0749_d	-	glutathione S-transferase
750	 55.75	0	836985..837863	-	292	56750759	phoA	syc0750_c	-	putative purple acid phosphatase
751	 51.44	-1	837928..838794	-	288	56750760	-	syc0751_c	-	hypothetical protein
752	 59.00	0	838905..840938	-	677	56750761	pbpA	syc0752_c	-	penicillin binding protein 1A
753	 62.58	+1	841021..841338	-	105	56750762	-	syc0753_c	-	hypothetical protein
754	 55.40	0	841624..842280	+	218	56750763	hisG	syc0754_d	-	ATP phosphoribosyltransferase catalytic subunit
755	 54.03	0	842313..844109	+	598	56750764	-	syc0755_d	-	ATP-binding protein of ABC transporter
55.98	MEAN

4.05	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.