IslandPathversion 1.0

IslandPath Analysis: Synechococcus elongatus PCC 6301



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.98 STD DEV: 4.05
Synechococcus elongatus PCC 6301, complete genome - 1..2696255
2527 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
596	 57.46	0	665178..666665	-	495	56750605	-	syc0596_c	-	L-amino acid oxidase
597	 45.66	-2	667000..668013	+	337	56750606	-	syc0597_d	-	hypothetical protein
598	 55.37	0	668066..669304	-	412	56750607	folC	syc0598_c	-	folylpolyglutamate synthase
599	 58.39	0	669301..670569	-	422	56750608	argD	syc0599_c	-	acetylornithine aminotransferase
600	 57.74	0	670957..672849	+	630	56750609	ftsH	syc0600_d	-	ATP-dependent Zn protease
601	 52.75	0	673033..674742	+	569	56750610	-	syc0601_d	-	ATP-binding protein of ABC transporter
602	 54.99	0	675167..675517	+	116	56750611	-	syc0602_d	-	hypothetical protein
603	 56.30	0	675562..676188	-	208	56750612	cysC	syc0603_c	-	adenylylsulfate kinase
604	 57.49	0	676266..676592	-	108	56750613	-	syc0604_c	-	transcriptional regulator
605	 55.12	0	676679..677371	+	230	56750614	-	syc0605_d	-	hypothetical protein
606	 55.86	0	677418..677963	+	181	56750615	-	syc0606_d	-	hypothetical protein
607	 57.85	0	677968..678738	+	256	56750616	-	syc0607_d	-	hypothetical protein
608	 58.57	0	678750..679811	-	353	56750617	-	syc0608_c	-	hypothetical protein
609	 58.44	0	679911..680396	+	161	56750618	-	syc0609_d	-	hypothetical protein
610	 58.17	0	680414..681613	-	399	56750619	lpxB	syc0610_c	-	lipid-A-disaccharide synthase
611	 57.99	0	681614..682420	-	268	56750620	lpxA	syc0611_c	-	UDP-N-acetylglucosamine acyltransferase
612	 58.76	0	682427..682894	-	155	56750621	fabZ	syc0612_c	-	(3R)-hydroxymyristoyl-ACP dehydratase
613	 59.53	0	682913..683767	-	284	56750622	lpxC	syc0613_c	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
614	 56.93	0	683777..685594	-	605	56750623	-	syc0614_c	-	chloroplastic outer envelope membrane protein
615	 54.55	0	686060..686785	-	241	56750624	purC	syc0615_c	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
616	 59.84	0	686813..688072	-	419	56750625	-	syc0616_c	-	hypothetical protein
617	 61.14	+1	688227..689528	+	433	56750626	purD	syc0617_d	-	phosphoribosylamine--glycine ligase
618	 55.06	0	689700..691586	+	628	56750627	nblS	syc0618_d	-	two-component system sensor histidie kinase
619	 57.65	0	691638..692513	+	291	56750628	-	syc0619_d	-	5'-methylthioadenosine phosphorylase
620	 59.14	0	692513..693415	+	300	56750629	gltX	syc0620_d	-	glutamyl-tRNA synthetase
621	 52.48	0	693412..693714	+	100	56750630	-	syc0621_d	-	hypothetical protein
622	 54.12	0	693832..694086	+	84	56750631	psaK	syc0622_d	-	photosystem I reaction center subunit X
623	 46.87	-2	694283..694777	-	164	56750632	-	syc0623_c	-	hypothetical protein
624	 57.13	0	694778..696727	-	649	56750633	fadD	syc0624_c	-	long-chain-fatty-acid CoA ligase
625	 55.43	0	697014..697280	+	88	56750634	-	syc0625_d	-	hypothetical protein
626	 55.04	0	697831..697959	+	42	56750635	-	syc0626_d	-	hypothetical protein
627	 54.67	0	697970..698419	+	149	56750636	aroQ	syc0627_d	-	3-dehydroquinate dehydratase
628	 56.54	0	698416..699027	+	203	56750637	-	syc0628_d	-	tRNA-(MS[2]IO[6]A)-hydroxylase
629	 59.80	0	699027..699521	+	164	56750638	-	syc0629_d	-	putative acetyltransferase
630	 59.11	0	699524..701482	-	652	56750639	dnaX	syc0630_c	-	DNA polymerase III gamma and tau subunits
631	 58.33	0	701558..701809	-	83	56750640	-	syc0631_c	-	hypothetical protein
632	 57.11	0	701819..702247	-	142	56750641	-	syc0632_c	-	hypothetical protein
633	 54.06	0	702316..702672	-	118	56750642	ycf57	syc0633_c	-	hypothetical protein
634	 54.48	0	702820..703566	-	248	56750643	-	syc0634_c	-	hypothetical protein
635	 53.59	0	703641..704099	-	152	56750644	-	syc0635_c	-	hypothetical protein
636	 56.62	0	705705..706301	-	198	56750645	-	syc0636_c	-	hypothetical protein
637	 58.00	0	706522..709107	+	861	56750646	acnB	syc0637_d	-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
638	 49.90	-1	709169..710128	+	319	56750647	-	syc0638_d	-	hypothetical protein
639	 57.66	0	710187..711041	-	284	56750648	-	syc0639_c	-	putative hydrolase
640	 55.39	0	711222..711425	+	67	56750649	-	syc0640_d	-	hypothetical protein
641	 57.64	0	711570..712367	+	265	56750650	-	syc0641_d	-	hypothetical protein
642	 56.49	0	712548..712940	-	130	56750651	-	syc0642_c	-	ferredoxin like protein
643	 53.62	0	712937..713212	-	91	56750652	minE	syc0643_c	-	septum site-determining protein MinE
644	 56.63	0	713227..714033	-	268	56750653	minD	syc0644_c	-	septum site-determining protein MinD
645	 58.74	0	714208..715380	+	390	56750654	-	syc0645_d	-	hypothetical protein
646	 52.01	0	715448..716020	+	190	56750655	aroK	syc0646_d	-	shikimate kinase
647	 56.51	0	716582..717664	-	360	56750656	psbAIII	syc0647_c	-	photosystem II D1 protein
648	 56.48	0	717746..718756	+	336	56750657	cofG	syc0648_d	-	FO synthase subunit 1
649	 47.33	-2	718830..719129	-	99	56750658	-	syc0649_c	-	hypothetical protein
650	 57.86	0	719507..724117	-	1536	56750659	glsF	syc0650_c	-	ferredoxin-dependent glutamate synthase
651	 59.96	0	724412..726229	+	605	56750660	-	syc0651_d	-	hypothetical protein
652	 59.17	0	726226..726585	+	119	56750661	-	syc0652_d	-	mannose-1-phosphate guanylyltransferase
653	 56.80	0	726741..727115	+	124	56750662	rpsL	syc0653_d	-	30S ribosomal protein S12
654	 57.32	0	727283..727753	+	156	56750663	rps7	syc0654_d	-	30S ribosomal protein S7
655	 54.39	0	727828..729912	+	694	56750664	fus	syc0655_d	-	elongation factor G
656	 56.67	0	729939..731168	+	409	56750665	tuf	syc0656_d	-	elongation factor Tu
657	 56.60	0	731242..731559	+	105	56750666	rpsJ	syc0657_d	-	30S ribosomal protein S10
658	 53.27	0	731769..732425	+	218	56750667	lon	syc0658_d	-	ATP-dependent Lon protease
659	 58.08	0	732438..733334	-	298	56750668	pheA	syc0659_c	-	prephenate dehydratase
660	 53.23	0	733393..733950	+	185	56750669	-	syc0660_d	-	hypothetical protein
661	 58.80	0	733973..734620	-	215	56750670	rnhB	syc0661_c	-	ribonuclease HII
662	 59.09	0	734604..737030	-	808	56750671	rne	syc0662_c	-	ribonuclease E
663	 59.18	0	737380..739998	-	872	56750672	-	syc0663_c	-	hypothetical protein
664	 58.38	0	740190..742868	-	892	56750673	alaS	syc0664_c	-	alanyl-tRNA synthetase
665	 57.74	0	742909..743412	+	167	56750674	-	syc0665_d	-	hypothetical protein
666	 56.99	0	743416..746475	+	1019	56750675	-	syc0666_d	-	putative SNF2 helicase
667	 39.21	-2	746669..747757	+	362	56750676	-	syc0667_d	-	hypothetical protein
668	 52.50	0	747925..748503	-	192	56750677	-	syc0668_c	-	hypothetical protein
669	 40.00	-2	748505..748759	+	84	56750678	-	syc0669_d	-	hypothetical protein
670	 44.74	-2	748752..748979	+	75	56750679	-	syc0670_d	-	hypothetical protein
671	 52.45	0	749013..749603	-	196	56750680	-	syc0671_c	-	hypothetical protein
672	 56.95	0	749612..751360	-	582	56750681	-	syc0672_c	-	hypothetical protein
673	 57.36	0	751361..751618	-	85	56750682	-	syc0673_c	-	hypothetical protein
674	 62.71	+1	751745..752326	-	193	56750683	-	syc0674_c	-	hypothetical protein
675	 52.44	0	752389..752880	-	163	56750684	-	syc0675_c	-	nucleotide-binding protein
676	 56.26	0	752953..753471	-	172	56750685	-	syc0676_c	-	hypothetical protein
677	 58.04	0	753658..754839	-	393	56750686	-	syc0677_c	-	hypothetical protein
678	 52.38	0	754893..755270	-	125	56750687	-	syc0678_c	-	hypothetical protein
679	 54.65	0	755397..756686	+	429	56750688	-	syc0679_d	-	bifunctional sterol desaturase/short chain dehydrogenase
680	 46.98	-2	756920..757879	-	319	56750689	-	syc0680_c	-	hypothetical protein
681	 48.32	-1	757890..760745	-	951	56750690	-	syc0681_c	-	two-component hybrid sensor and regulator
682	 50.41	-1	760754..764974	-	1406	56750691	pixJ	syc0682_c	-	methyl-accepting chemotaxis protein
683	 49.90	-1	765046..765552	-	168	56750692	-	syc0683_c	-	hypothetical protein
684	 46.83	-2	765572..765934	-	120	56750693	-	syc0684_c	-	CheY family two-component response regulator
685	 43.10	-2	765979..767238	-	419	56750694	pixG	syc0685_c	-	two-component response regulator rre36-like protein
686	 56.99	0	768238..770634	-	798	56750695	-	syc0686_c	-	hypothetical protein
687	 55.91	0	770762..771997	-	411	56750696	aspB	syc0687_c	-	L,L-diaminopimelate aminotransferase
688	 54.51	0	771984..772460	-	158	56750697	-	syc0688_c	-	pseudo transposase
689	 56.66	0	772609..773667	-	352	56750698	purM	syc0689_c	-	phosphoribosylaminoimidazole synthetase
690	 54.73	0	774188..774388	+	66	56750699	-	syc0690_d	-	hypothetical protein
691	 55.27	0	774458..775045	+	195	56750700	-	syc0691_d	-	hypothetical protein
692	 56.71	0	775520..778531	+	1003	56750701	uvrA	syc0692_d	-	excinuclease ABC subunit A
693	 54.54	0	778635..779747	+	370	56750702	pilT3	syc0693_d	-	twitching mobility protein
694	 58.12	0	779786..780604	+	272	56750703	-	syc0694_d	-	hypothetical protein
695	 53.63	0	780788..781186	-	132	56750704	-	syc0695_c	-	hypothetical protein
55.98	MEAN

4.05	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.