IslandPathversion 1.0

IslandPath Analysis: Synechococcus elongatus PCC 6301



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.98 STD DEV: 4.05
Synechococcus elongatus PCC 6301, complete genome - 1..2696255
2527 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
543	 53.52	0	606592..606918	-	108	56750552	psaD	syc0543_c	-	photosystem I reaction center subunit II
544	 58.14	0	607127..608920	+	597	56750553	lysC	syc0544_d	-	aspartate kinase
545	 56.66	0	609401..612667	+	1088	56750554	-	syc0545_d	-	hypothetical protein
546	 55.24	0	613287..615185	-	632	56750555	ftsH	syc0546_c	-	ATP-dependent Zn protease
547	 54.24	0	615374..615550	+	58	56750556	rpmF	syc0547_d	-	50S ribosomal protein L32
548	 57.75	0	615566..616552	-	328	56750557	-	syc0548_c	-	hypothetical protein
549	 58.11	0	616602..616940	-	112	56750558	ycf20	syc0549_c	-	hypothetical protein
550	 62.46	+1	617060..617629	+	189	56750559	-	syc0550_d	-	hypothetical protein
551	 59.68	0	617652..619040	+	462	56750560	-	syc0551_d	-	hypothetical protein
552	 60.61	+1	619007..621004	-	665	56750561	-	syc0552_c	-	hypothetical protein
553	 51.50	-1	621077..622342	+	421	56750562	pxcA	syc0553_d	-	proton extrusion protein PcxA
554	 52.67	0	622352..622894	+	180	56750563	cobU	syc0554_d	-	adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase
555	 54.55	0	622933..623427	+	164	56750564	-	syc0555_d	-	hypothetical protein
556	 52.29	0	623532..623858	+	108	56750565	ycf54	syc0556_d	-	hypothetical protein
557	 52.70	0	624083..624526	+	147	56750566	fur	syc0557_d	-	ferric uptake regulation protein
558	 56.51	0	624575..625726	-	383	56750567	-	syc0558_c	-	glycosyltransferase
559	 56.25	0	625770..627152	-	460	56750568	-	syc0559_c	-	hypothetical protein
560	 60.05	+1	627136..627936	-	266	56750569	recO	syc0560_c	-	DNA repair protein RecO
561	 58.95	0	627933..628619	-	228	56750570	deoC	syc0561_c	-	deoxyribose-phosphate aldolase
562	 55.45	0	628639..629253	-	204	56750571	-	syc0562_c	-	hypothetical protein
563	 56.93	0	629312..631006	+	564	56750572	-	syc0563_d	-	hypothetical protein
564	 51.39	-1	631434..632153	+	239	56750573	-	syc0564_d	-	hypothetical protein
565	 52.18	0	632229..632732	+	167	56750574	-	syc0565_d	-	hypothetical protein
566	 55.45	0	633180..634391	-	403	56750575	petH	syc0566_c	-	ferredoxin-NADP oxidoreductase
567	 56.49	0	634796..635797	+	333	56750576	prk	syc0567_d	-	phosphoribulokinase
568	 59.74	0	635909..638638	-	909	56750577	-	syc0568_c	-	polyA polymerase
569	 59.93	0	638662..639552	+	296	56750578	mraW	syc0569_d	-	S-adenosyl-methyltransferase MraW
570	 57.10	0	639669..641048	+	459	56750579	ugd	syc0570_d	-	UDP-glucose dehydrogenase
571	 59.80	0	641045..641437	-	130	56750580	-	syc0571_c	-	hypothetical protein
572	 58.95	0	641647..642903	+	418	56750581	-	syc0572_d	-	hypothetical protein
573	 59.92	0	642924..644495	-	523	56750582	-	syc0573_c	-	to phytoene dehydrogenase
574	 57.49	0	644611..645438	+	275	56750583	-	syc0574_d	-	carboxymethylenebutenolidase
575	 58.98	0	645745..646707	-	320	161621822	hemC	syc0575_c	-	porphobilinogen deaminase
576	 57.82	0	646860..647447	+	195	56750585	-	syc0576_d	-	hypothetical protein
577	 60.23	+1	647456..648418	-	320	56750586	-	syc0577_c	-	ammonium transporter
578	 60.69	+1	648432..648950	-	172	56750587	-	syc0578_c	-	hypothetical protein
579	 60.37	+1	649167..649547	+	126	56750588	-	syc0579_d	-	methyltransferase
580	 59.52	0	649621..650838	+	405	56750589	sun	syc0580_d	-	sun protein
581	 57.99	0	650856..651869	-	337	56750590	-	syc0581_c	-	cell envelope-like transcriptional attenuator
582	 57.47	0	651958..653262	-	434	56750591	-	syc0582_c	-	ATP-binding protein of sugar ABC transporter
583	 57.85	0	653245..654276	+	343	56750592	obgE	syc0583_d	-	GTPase ObgE
584	 58.25	0	654451..655080	+	209	56750593	purN	syc0584_d	-	phosphoribosylglycinamide formyltransferase
585	 55.40	0	655087..655734	-	215	56750594	cobO	syc0585_c	-	cob(I)yrinic acid a,c-diamide adenosyltransferase
586	 50.39	-1	655738..656880	-	380	56750595	-	syc0586_c	-	hypothetical protein
587	 56.65	0	657016..657534	+	172	56750596	-	syc0587_d	-	hypothetical protein
588	 58.07	0	657506..658540	+	344	56750597	-	syc0588_d	-	glycine cleavage T-protein
589	 55.27	0	658598..659062	+	154	56750598	-	syc0589_d	-	hypothetical protein
590	 53.28	0	659186..659977	+	263	56750599	-	syc0590_d	-	hypothetical protein
591	 56.40	0	660121..660987	-	288	56750600	nadC	syc0591_c	-	nicotinate-nucleotide pyrophosphorylase
592	 58.09	0	661069..662385	+	438	56750601	-	syc0592_d	-	hypothetical protein
593	 59.39	0	662382..663260	+	292	56750602	-	syc0593_d	-	permease protein of sugar ABC transporter
594	 57.64	0	663257..664087	+	276	56750603	-	syc0594_d	-	permease protein of sugar ABC transporter
595	 59.08	0	664092..665159	+	355	56750604	ggtA	syc0595_d	-	glucosylglycerol transport system ATP-binding protein
596	 57.46	0	665178..666665	-	495	56750605	-	syc0596_c	-	L-amino acid oxidase
597	 45.66	-2	667000..668013	+	337	56750606	-	syc0597_d	-	hypothetical protein
598	 55.37	0	668066..669304	-	412	56750607	folC	syc0598_c	-	folylpolyglutamate synthase
599	 58.39	0	669301..670569	-	422	56750608	argD	syc0599_c	-	acetylornithine aminotransferase
600	 57.74	0	670957..672849	+	630	56750609	ftsH	syc0600_d	-	ATP-dependent Zn protease
601	 52.75	0	673033..674742	+	569	56750610	-	syc0601_d	-	ATP-binding protein of ABC transporter
602	 54.99	0	675167..675517	+	116	56750611	-	syc0602_d	-	hypothetical protein
603	 56.30	0	675562..676188	-	208	56750612	cysC	syc0603_c	-	adenylylsulfate kinase
604	 57.49	0	676266..676592	-	108	56750613	-	syc0604_c	-	transcriptional regulator
605	 55.12	0	676679..677371	+	230	56750614	-	syc0605_d	-	hypothetical protein
606	 55.86	0	677418..677963	+	181	56750615	-	syc0606_d	-	hypothetical protein
607	 57.85	0	677968..678738	+	256	56750616	-	syc0607_d	-	hypothetical protein
608	 58.57	0	678750..679811	-	353	56750617	-	syc0608_c	-	hypothetical protein
609	 58.44	0	679911..680396	+	161	56750618	-	syc0609_d	-	hypothetical protein
610	 58.17	0	680414..681613	-	399	56750619	lpxB	syc0610_c	-	lipid-A-disaccharide synthase
611	 57.99	0	681614..682420	-	268	56750620	lpxA	syc0611_c	-	UDP-N-acetylglucosamine acyltransferase
612	 58.76	0	682427..682894	-	155	56750621	fabZ	syc0612_c	-	(3R)-hydroxymyristoyl-ACP dehydratase
613	 59.53	0	682913..683767	-	284	56750622	lpxC	syc0613_c	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
614	 56.93	0	683777..685594	-	605	56750623	-	syc0614_c	-	chloroplastic outer envelope membrane protein
615	 54.55	0	686060..686785	-	241	56750624	purC	syc0615_c	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
616	 59.84	0	686813..688072	-	419	56750625	-	syc0616_c	-	hypothetical protein
617	 61.14	+1	688227..689528	+	433	56750626	purD	syc0617_d	-	phosphoribosylamine--glycine ligase
618	 55.06	0	689700..691586	+	628	56750627	nblS	syc0618_d	-	two-component system sensor histidie kinase
619	 57.65	0	691638..692513	+	291	56750628	-	syc0619_d	-	5'-methylthioadenosine phosphorylase
620	 59.14	0	692513..693415	+	300	56750629	gltX	syc0620_d	-	glutamyl-tRNA synthetase
621	 52.48	0	693412..693714	+	100	56750630	-	syc0621_d	-	hypothetical protein
622	 54.12	0	693832..694086	+	84	56750631	psaK	syc0622_d	-	photosystem I reaction center subunit X
623	 46.87	-2	694283..694777	-	164	56750632	-	syc0623_c	-	hypothetical protein
624	 57.13	0	694778..696727	-	649	56750633	fadD	syc0624_c	-	long-chain-fatty-acid CoA ligase
625	 55.43	0	697014..697280	+	88	56750634	-	syc0625_d	-	hypothetical protein
626	 55.04	0	697831..697959	+	42	56750635	-	syc0626_d	-	hypothetical protein
627	 54.67	0	697970..698419	+	149	56750636	aroQ	syc0627_d	-	3-dehydroquinate dehydratase
628	 56.54	0	698416..699027	+	203	56750637	-	syc0628_d	-	tRNA-(MS[2]IO[6]A)-hydroxylase
629	 59.80	0	699027..699521	+	164	56750638	-	syc0629_d	-	putative acetyltransferase
630	 59.11	0	699524..701482	-	652	56750639	dnaX	syc0630_c	-	DNA polymerase III gamma and tau subunits
631	 58.33	0	701558..701809	-	83	56750640	-	syc0631_c	-	hypothetical protein
632	 57.11	0	701819..702247	-	142	56750641	-	syc0632_c	-	hypothetical protein
633	 54.06	0	702316..702672	-	118	56750642	ycf57	syc0633_c	-	hypothetical protein
634	 54.48	0	702820..703566	-	248	56750643	-	syc0634_c	-	hypothetical protein
635	 53.59	0	703641..704099	-	152	56750644	-	syc0635_c	-	hypothetical protein
636	 56.62	0	705705..706301	-	198	56750645	-	syc0636_c	-	hypothetical protein
637	 58.00	0	706522..709107	+	861	56750646	acnB	syc0637_d	-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
638	 49.90	-1	709169..710128	+	319	56750647	-	syc0638_d	-	hypothetical protein
639	 57.66	0	710187..711041	-	284	56750648	-	syc0639_c	-	putative hydrolase
640	 55.39	0	711222..711425	+	67	56750649	-	syc0640_d	-	hypothetical protein
641	 57.64	0	711570..712367	+	265	56750650	-	syc0641_d	-	hypothetical protein
642	 56.49	0	712548..712940	-	130	56750651	-	syc0642_c	-	ferredoxin like protein
55.98	MEAN

4.05	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.