IslandPathversion 1.0

IslandPath Analysis: Synechococcus elongatus PCC 6301



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.98 STD DEV: 4.05
Synechococcus elongatus PCC 6301, complete genome - 1..2696255
2527 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
493	 59.62	0	554125..554748	-	207	56750502	cpcF	syc0493_c	-	phycocyanin alpha-subunit phycocyanobilin lyase
494	 57.54	0	554755..555576	-	273	56750503	cpcE	syc0494_c	-	phycobilisome maturation protein CpcE
495	 53.46	0	555667..556158	-	163	56750504	cpcA	syc0495_c	-	phycocyanin alpha subunit
496	 57.09	0	556210..556731	-	173	56750505	cpcB	syc0496_c	-	phycocyanin beta subunit
497	 53.25	0	557241..557486	-	81	56750506	cpcD	syc0497_c	-	phycocyanin linker protein 9K
498	 58.16	0	557578..558447	-	289	56750507	cpcC	syc0498_c	-	phycobilisome rod linker polypeptide
499	 52.19	0	558495..559316	-	273	56750508	cpcC	syc0499_c	-	phycobilisome rod linker polypeptide
500	 53.66	0	559422..559913	-	163	56750509	cpcA	syc0500_c	-	phycocyanin alpha subunit
501	 56.90	0	559965..560486	-	173	56750510	cpcB	syc0501_c	-	phycocyanin beta subunit
502	 55.86	0	561115..561558	-	147	56750511	-	syc0502_c	-	hypothetical protein
503	 58.52	0	561690..563261	+	523	56750512	-	syc0503_d	-	amidase enhancer
504	 56.71	0	563342..564064	+	240	56750513	-	syc0504_d	-	hypothetical protein
505	 57.49	0	564182..564835	+	217	56750514	-	syc0505_d	-	hypothetical protein
506	 54.76	0	564824..565159	-	111	56750515	-	syc0506_c	-	hypothetical protein
507	 58.24	0	565525..566082	-	185	56750516	-	syc0507_c	-	hypothetical protein
508	 49.48	-1	566451..566927	+	158	56750517	-	syc0508_d	-	hypothetical protein
509	 53.57	0	566953..567540	-	195	56750518	-	syc0509_c	-	hypothetical protein
510	 53.27	0	567550..569505	-	651	56750519	-	syc0510_c	-	arginine decarboxylase
511	 54.76	0	569547..570050	-	167	56750520	-	syc0511_c	-	hypothetical protein
512	 55.22	0	570244..571038	+	264	56750521	-	syc0512_d	-	hypothetical protein
513	 56.94	0	570989..571852	-	287	56750522	-	syc0513_c	-	hypothetical protein
514	 48.59	-1	571856..572812	-	318	56750523	-	syc0514_c	-	hypothetical protein
515	 49.83	-1	572832..574298	-	488	56750524	-	syc0515_c	-	hypothetical protein
516	 55.70	0	574795..575916	-	373	56750525	hisC	syc0516_c	-	histidinol-phosphate aminotransferase
517	 54.54	0	575946..576860	-	304	56750526	livE	syc0517_c	-	branched-chain amino acid aminotransferase
518	 58.73	0	577464..578420	+	318	56750527	-	syc0518_d	-	hypothetical protein
519	 60.95	+1	578690..579004	-	104	56750528	-	syc0519_c	-	hypothetical protein
520	 57.89	0	579079..580833	+	584	56750529	-	syc0520_d	-	fibronectin binding protein
521	 55.88	0	581230..581637	-	135	56750530	-	syc0521_c	-	hypothetical protein
522	 60.62	+1	581707..582699	+	330	56750531	-	syc0522_d	-	hypothetical protein
523	 59.76	0	582719..582964	+	81	56750532	-	syc0523_d	-	hypothetical protein
524	 57.67	0	582968..583756	+	262	56750533	-	syc0524_d	-	hypothetical protein
525	 59.52	0	583731..585074	-	447	56750534	menE	syc0525_c	-	O-succinylbenzoic acid--CoA ligase
526	 59.52	0	585059..586009	-	316	56750535	menC	syc0526_c	-	O-succinylbenzoate synthase
527	 59.47	0	586006..587505	-	499	56750536	-	syc0527_c	-	4-alpha-glucanotransferase
528	 58.18	0	587593..588228	-	211	56750537	-	syc0528_c	-	hypothetical protein
529	 57.74	0	588347..589108	+	253	56750538	-	syc0529_d	-	hypothetical protein
530	 56.52	0	589370..589852	+	160	56750539	cheW	syc0530_d	-	purine-binding chemotaxis protein CheW
531	 59.76	0	589868..592387	+	839	56750540	-	syc0531_d	-	methyl-accepting chemotaxis protein
532	 57.27	0	592390..595176	+	928	56750541	-	syc0532_d	-	two-component hybrid sensor and regulator
533	 56.46	0	596063..596836	+	257	56750542	sphR	syc0533_d	-	phosphate sensor two-component response regulator
534	 60.63	+1	596849..598090	+	413	56750543	sphS	syc0534_d	-	phosphate sensor two-component sensor histidine kinase
535	 58.20	0	598105..598836	+	243	56750544	-	syc0535_d	-	ribosomal large subunit pseudouridine synthase B
536	 60.21	+1	599070..599456	+	128	56750545	-	syc0536_d	-	hypothetical protein
537	 50.76	-1	599621..600475	+	284	56750546	purU	syc0537_d	-	formyltetrahydrofolate deformylase
538	 49.35	-1	600512..601903	+	463	56750547	fumC	syc0538_d	-	fumarate hydratase
539	 52.41	0	602684..603763	-	359	56750548	-	syc0539_c	-	hypothetical protein
540	 53.02	0	603863..604492	-	209	56750549	-	syc0540_c	-	hypothetical protein
541	 54.40	0	604527..604844	+	105	56750550	-	syc0541_d	-	hypothetical protein
542	 57.66	0	604820..606373	-	517	56750551	trpE	syc0542_c	-	anthranilate synthase component I
543	 53.52	0	606592..606918	-	108	56750552	psaD	syc0543_c	-	photosystem I reaction center subunit II
544	 58.14	0	607127..608920	+	597	56750553	lysC	syc0544_d	-	aspartate kinase
545	 56.66	0	609401..612667	+	1088	56750554	-	syc0545_d	-	hypothetical protein
546	 55.24	0	613287..615185	-	632	56750555	ftsH	syc0546_c	-	ATP-dependent Zn protease
547	 54.24	0	615374..615550	+	58	56750556	rpmF	syc0547_d	-	50S ribosomal protein L32
548	 57.75	0	615566..616552	-	328	56750557	-	syc0548_c	-	hypothetical protein
549	 58.11	0	616602..616940	-	112	56750558	ycf20	syc0549_c	-	hypothetical protein
550	 62.46	+1	617060..617629	+	189	56750559	-	syc0550_d	-	hypothetical protein
551	 59.68	0	617652..619040	+	462	56750560	-	syc0551_d	-	hypothetical protein
552	 60.61	+1	619007..621004	-	665	56750561	-	syc0552_c	-	hypothetical protein
553	 51.50	-1	621077..622342	+	421	56750562	pxcA	syc0553_d	-	proton extrusion protein PcxA
554	 52.67	0	622352..622894	+	180	56750563	cobU	syc0554_d	-	adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase
555	 54.55	0	622933..623427	+	164	56750564	-	syc0555_d	-	hypothetical protein
556	 52.29	0	623532..623858	+	108	56750565	ycf54	syc0556_d	-	hypothetical protein
557	 52.70	0	624083..624526	+	147	56750566	fur	syc0557_d	-	ferric uptake regulation protein
558	 56.51	0	624575..625726	-	383	56750567	-	syc0558_c	-	glycosyltransferase
559	 56.25	0	625770..627152	-	460	56750568	-	syc0559_c	-	hypothetical protein
560	 60.05	+1	627136..627936	-	266	56750569	recO	syc0560_c	-	DNA repair protein RecO
561	 58.95	0	627933..628619	-	228	56750570	deoC	syc0561_c	-	deoxyribose-phosphate aldolase
562	 55.45	0	628639..629253	-	204	56750571	-	syc0562_c	-	hypothetical protein
563	 56.93	0	629312..631006	+	564	56750572	-	syc0563_d	-	hypothetical protein
564	 51.39	-1	631434..632153	+	239	56750573	-	syc0564_d	-	hypothetical protein
565	 52.18	0	632229..632732	+	167	56750574	-	syc0565_d	-	hypothetical protein
566	 55.45	0	633180..634391	-	403	56750575	petH	syc0566_c	-	ferredoxin-NADP oxidoreductase
567	 56.49	0	634796..635797	+	333	56750576	prk	syc0567_d	-	phosphoribulokinase
568	 59.74	0	635909..638638	-	909	56750577	-	syc0568_c	-	polyA polymerase
569	 59.93	0	638662..639552	+	296	56750578	mraW	syc0569_d	-	S-adenosyl-methyltransferase MraW
570	 57.10	0	639669..641048	+	459	56750579	ugd	syc0570_d	-	UDP-glucose dehydrogenase
571	 59.80	0	641045..641437	-	130	56750580	-	syc0571_c	-	hypothetical protein
572	 58.95	0	641647..642903	+	418	56750581	-	syc0572_d	-	hypothetical protein
573	 59.92	0	642924..644495	-	523	56750582	-	syc0573_c	-	to phytoene dehydrogenase
574	 57.49	0	644611..645438	+	275	56750583	-	syc0574_d	-	carboxymethylenebutenolidase
575	 58.98	0	645745..646707	-	320	161621822	hemC	syc0575_c	-	porphobilinogen deaminase
576	 57.82	0	646860..647447	+	195	56750585	-	syc0576_d	-	hypothetical protein
577	 60.23	+1	647456..648418	-	320	56750586	-	syc0577_c	-	ammonium transporter
578	 60.69	+1	648432..648950	-	172	56750587	-	syc0578_c	-	hypothetical protein
579	 60.37	+1	649167..649547	+	126	56750588	-	syc0579_d	-	methyltransferase
580	 59.52	0	649621..650838	+	405	56750589	sun	syc0580_d	-	sun protein
581	 57.99	0	650856..651869	-	337	56750590	-	syc0581_c	-	cell envelope-like transcriptional attenuator
582	 57.47	0	651958..653262	-	434	56750591	-	syc0582_c	-	ATP-binding protein of sugar ABC transporter
583	 57.85	0	653245..654276	+	343	56750592	obgE	syc0583_d	-	GTPase ObgE
584	 58.25	0	654451..655080	+	209	56750593	purN	syc0584_d	-	phosphoribosylglycinamide formyltransferase
585	 55.40	0	655087..655734	-	215	56750594	cobO	syc0585_c	-	cob(I)yrinic acid a,c-diamide adenosyltransferase
586	 50.39	-1	655738..656880	-	380	56750595	-	syc0586_c	-	hypothetical protein
587	 56.65	0	657016..657534	+	172	56750596	-	syc0587_d	-	hypothetical protein
588	 58.07	0	657506..658540	+	344	56750597	-	syc0588_d	-	glycine cleavage T-protein
589	 55.27	0	658598..659062	+	154	56750598	-	syc0589_d	-	hypothetical protein
590	 53.28	0	659186..659977	+	263	56750599	-	syc0590_d	-	hypothetical protein
591	 56.40	0	660121..660987	-	288	56750600	nadC	syc0591_c	-	nicotinate-nucleotide pyrophosphorylase
592	 58.09	0	661069..662385	+	438	56750601	-	syc0592_d	-	hypothetical protein
55.98	MEAN

4.05	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.