IslandPathversion 1.0

IslandPath Analysis: Synechococcus elongatus PCC 6301



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.98 STD DEV: 4.05
Synechococcus elongatus PCC 6301, complete genome - 1..2696255
2527 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
420	 58.76	0	471416..472288	-	290	56750429	-	syc0420_c	-	hypothetical protein
421	 49.13	-1	472367..473455	-	362	56750430	-	syc0421_c	-	hypothetical protein
422	 57.62	0	473962..475431	-	489	56750431	tldD	syc0422_c	-	putative modulator of DNA gyrase TldD
423	 55.04	0	475581..476414	+	277	56750432	-	syc0423_d	-	ABC transporter permease protein
424	 57.05	0	476472..477407	-	311	56750433	-	syc0424_c	-	two-component sensor histidine kinase
425	 58.22	0	477504..479516	-	670	56750434	rnb	syc0425_c	-	ribonuclease II
426	 54.17	0	479538..479753	-	71	56750435	rpsR	syc0426_c	-	30S ribosomal protein S18
427	 54.87	0	479809..480003	-	64	56750436	rpmG	syc0427_c	-	50S ribosomal protein L33
428	 59.31	0	480181..482340	+	719	56750437	-	syc0428_d	-	serine/threonine kinase
429	 50.56	-1	482585..482944	+	119	56750438	-	syc0429_d	-	hypothetical protein
430	 49.12	-1	483510..484187	+	225	56750439	-	syc0430_d	-	hypothetical protein
431	 47.24	-2	484217..485740	+	507	56750440	-	syc0431_d	-	mercuric reductase
432	 42.84	-2	485761..486423	-	220	56750441	-	syc0432_c	-	hypothetical protein
433	 56.49	0	486628..487836	-	402	56750442	pgk	syc0433_c	-	phosphoglycerate kinase
434	 58.79	0	488084..488464	+	126	56750443	-	syc0434_d	-	hypothetical protein
435	 58.56	0	488461..489324	+	287	56750444	rbgA	syc0435_d	-	ribosomal biogenesis GTPase
436	 57.51	0	489331..490422	+	363	56750445	-	syc0436_d	-	hypothetical protein
437	 59.55	0	490419..491360	+	313	56750446	-	syc0437_d	-	ribosomal large subunit pseudouridine synthase D
438	 58.46	0	491357..492940	+	527	56750447	-	syc0438_d	-	serine/threonine kinase
439	 56.78	0	493277..493903	-	208	56750448	-	syc0439_c	-	two-component response regulator
440	 60.52	+1	494064..495137	-	357	56750449	hisC	syc0440_c	-	threonine-phosphate decarboxylase
441	 51.81	-1	495156..495431	-	91	56750450	-	syc0441_c	-	DNA binding protein HU
442	 60.42	+1	495714..496514	+	266	56750451	-	syc0442_d	-	hypothetical protein
443	 53.08	0	496655..497125	+	156	56750452	-	syc0443_d	-	hypothetical protein
444	 58.47	0	497269..498354	+	361	56750453	mrp	syc0444_d	-	ATP-binding protein involved in chromosome partitioning
445	 57.11	0	498386..499651	+	421	56750454	rodA	syc0445_d	-	rod shape determining protein
446	 58.74	0	499749..500480	+	243	56750455	-	syc0446_d	-	glucosamine-6-phosphate isomerase 2
447	 63.64	+1	500545..500973	-	142	56750456	-	syc0447_c	-	hypothetical protein
448	 58.38	0	500985..502142	-	385	56750457	-	syc0448_c	-	protease
449	 53.21	0	502252..503700	+	482	56750458	dnaA	syc0449_d	-	chromosomal replication initiation protein
450	 57.69	0	503841..504542	+	233	56750459	ubiE	syc0450_d	-	ubiquinone/menaquinone biosynthesis methyltransferase
451	 59.81	0	504632..505783	+	383	56750460	-	syc0451_d	-	hypothetical protein
452	 55.56	0	505856..505981	-	41	56750461	-	syc0452_c	-	hypothetical protein
453	 57.62	0	506079..507449	+	456	56750462	thiC	syc0453_d	-	thiamine biosynthesis protein ThiC
454	 56.10	0	507525..507950	-	141	56750463	-	syc0454_c	-	hypothetical protein
455	 56.31	0	508268..508885	+	205	56750464	tenA	syc0455_d	-	transcriptional activator TenA
456	 55.85	0	509023..510159	+	378	56750465	anmK	syc0456_d	-	anhydro-N-acetylmuramic acid kinase
457	 46.82	-2	510140..510799	+	219	56750466	-	syc0457_d	-	hypothetical protein
458	 58.59	0	511268..512431	-	387	56750467	-	syc0458_c	-	hypothetical protein
459	 55.39	0	512529..513326	+	265	56750468	-	syc0459_d	-	hypothetical protein
460	 50.72	-1	513442..516093	-	883	56750469	-	syc0460_c	-	ClpB protein
461	 57.94	0	516233..516610	-	125	56750470	petE	syc0461_c	-	plastocyanin
462	 54.46	0	516639..517613	-	324	56750471	-	syc0462_c	-	hypothetical protein
463	 57.09	0	517635..518699	-	354	56750472	hemE	syc0463_c	-	uroporphyrinogen decarboxylase
464	 56.43	0	518759..521083	-	774	56750473	glgB	syc0464_c	-	glycogen branching enzyme
465	 61.47	+1	521292..521618	+	108	56750474	-	syc0465_d	-	hypothetical protein
466	 59.11	0	521628..523004	-	458	56750475	-	syc0466_c	-	glycosyltransferase
467	 57.28	0	523287..526067	-	926	56750476	-	syc0467_c	-	cation-transporting ATPase PacL-like protein
468	 48.58	-1	526972..527673	-	233	56750477	-	syc0468_c	-	hypothetical protein
469	 46.88	-2	527680..529023	-	447	56750478	-	syc0469_c	-	V-type sodium ATP synthase subunit J-like protein
470	 56.81	0	529653..532106	-	817	56750479	recG	syc0470_c	-	ATP-dependent DNA helicase RecG
471	 57.80	0	532116..533051	-	311	56750480	-	syc0471_c	-	hypothetical protein
472	 55.91	0	533166..533537	-	123	56750481	-	syc0472_c	-	hypothetical protein
473	 46.04	-2	533807..534223	+	138	56750482	sis	syc0473_d	-	osmotic signal transduction related protein
474	 59.06	0	534371..535159	+	262	56750483	-	syc0474_d	-	hypothetical protein
475	 55.56	0	535242..535547	+	101	56750484	-	syc0475_d	-	hypothetical protein
476	 59.69	0	535637..536353	-	238	56750485	rph	syc0476_c	-	ribonuclease PH
477	 59.04	0	536470..537033	+	187	56750486	cobO	syc0477_d	-	cob(I)yrinic acid a,c-diamide adenosyltransferase
478	 56.89	0	537157..537657	+	166	56750487	-	syc0478_d	-	hypothetical protein
479	 56.77	0	537953..539074	+	373	56750488	-	syc0479_d	-	oxidoreductase aldo/keto reductase
480	 59.14	0	539062..539805	+	247	56750489	-	syc0480_d	-	hypothetical protein
481	 60.26	+1	540031..541326	-	431	56750490	pdhC	syc0481_c	-	branched-chain alpha-keto acid dehydrogenase subunit E2
482	 58.47	0	541522..542070	-	182	56750491	-	syc0482_c	-	hypothetical protein
483	 55.58	0	542320..545439	-	1039	56750492	-	syc0483_c	-	hypothetical protein
484	 42.29	-2	545436..546797	-	453	56750493	-	syc0484_c	-	type I restriction-modification
485	 47.39	-2	547062..547310	-	82	56750494	-	syc0485_c	-	hypothetical protein
486	 51.94	0	547324..547581	-	85	56750495	-	syc0486_c	-	hypothetical protein
487	 52.46	0	547591..548526	-	311	56750496	-	syc0487_c	-	hypothetical protein
488	 53.80	0	548752..550779	-	675	56750497	-	syc0488_c	-	type I restriction-modification
489	 59.16	0	550971..551903	-	310	56750498	-	syc0489_c	-	hypothetical protein
490	 58.22	0	552016..552228	-	70	56750499	ycf40	syc0490_c	-	hypothetical protein
491	 59.79	0	552246..553277	-	343	56750500	thiE	syc0491_c	-	thiamine-phosphate pyrophosphorylase
492	 60.15	+1	553316..554098	-	260	56750501	-	syc0492_c	-	hypothetical protein
493	 59.62	0	554125..554748	-	207	56750502	cpcF	syc0493_c	-	phycocyanin alpha-subunit phycocyanobilin lyase
494	 57.54	0	554755..555576	-	273	56750503	cpcE	syc0494_c	-	phycobilisome maturation protein CpcE
495	 53.46	0	555667..556158	-	163	56750504	cpcA	syc0495_c	-	phycocyanin alpha subunit
496	 57.09	0	556210..556731	-	173	56750505	cpcB	syc0496_c	-	phycocyanin beta subunit
497	 53.25	0	557241..557486	-	81	56750506	cpcD	syc0497_c	-	phycocyanin linker protein 9K
498	 58.16	0	557578..558447	-	289	56750507	cpcC	syc0498_c	-	phycobilisome rod linker polypeptide
499	 52.19	0	558495..559316	-	273	56750508	cpcC	syc0499_c	-	phycobilisome rod linker polypeptide
500	 53.66	0	559422..559913	-	163	56750509	cpcA	syc0500_c	-	phycocyanin alpha subunit
501	 56.90	0	559965..560486	-	173	56750510	cpcB	syc0501_c	-	phycocyanin beta subunit
502	 55.86	0	561115..561558	-	147	56750511	-	syc0502_c	-	hypothetical protein
503	 58.52	0	561690..563261	+	523	56750512	-	syc0503_d	-	amidase enhancer
504	 56.71	0	563342..564064	+	240	56750513	-	syc0504_d	-	hypothetical protein
505	 57.49	0	564182..564835	+	217	56750514	-	syc0505_d	-	hypothetical protein
506	 54.76	0	564824..565159	-	111	56750515	-	syc0506_c	-	hypothetical protein
507	 58.24	0	565525..566082	-	185	56750516	-	syc0507_c	-	hypothetical protein
508	 49.48	-1	566451..566927	+	158	56750517	-	syc0508_d	-	hypothetical protein
509	 53.57	0	566953..567540	-	195	56750518	-	syc0509_c	-	hypothetical protein
510	 53.27	0	567550..569505	-	651	56750519	-	syc0510_c	-	arginine decarboxylase
511	 54.76	0	569547..570050	-	167	56750520	-	syc0511_c	-	hypothetical protein
512	 55.22	0	570244..571038	+	264	56750521	-	syc0512_d	-	hypothetical protein
513	 56.94	0	570989..571852	-	287	56750522	-	syc0513_c	-	hypothetical protein
514	 48.59	-1	571856..572812	-	318	56750523	-	syc0514_c	-	hypothetical protein
515	 49.83	-1	572832..574298	-	488	56750524	-	syc0515_c	-	hypothetical protein
516	 55.70	0	574795..575916	-	373	56750525	hisC	syc0516_c	-	histidinol-phosphate aminotransferase
517	 54.54	0	575946..576860	-	304	56750526	livE	syc0517_c	-	branched-chain amino acid aminotransferase
518	 58.73	0	577464..578420	+	318	56750527	-	syc0518_d	-	hypothetical protein
519	 60.95	+1	578690..579004	-	104	56750528	-	syc0519_c	-	hypothetical protein
55.98	MEAN

4.05	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.