IslandPathversion 1.0

IslandPath Analysis: Synechococcus elongatus PCC 6301



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.98 STD DEV: 4.05
Synechococcus elongatus PCC 6301, complete genome - 1..2696255
2527 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
391	 56.69	0	427513..428013	+	166	56750400	-	syc0391_d	-	transcriptional regulator
392	 41.57	-2	428321..431500	+	1059	56750401	-	syc0392_d	-	hypothetical protein
393	 55.90	0	431539..434724	-	1061	56750402	-	syc0393_c	-	hypothetical protein
394	 58.35	0	434711..437308	-	865	56750403	-	syc0394_c	-	hypothetical protein
395	 56.38	0	437610..438299	-	229	56750404	-	syc0395_c	-	hypothetical protein
396	 58.92	0	438263..439669	+	468	56750405	-	syc0396_d	-	hypothetical protein
397	 59.24	0	439666..441510	+	614	56750406	-	syc0397_d	-	hypothetical protein
398	 59.26	0	442110..443135	+	341	56750407	-	syc0398_d	-	hypothetical protein
399	 59.03	0	443339..444922	+	527	56750408	panC	syc0399_d	-	bifunctional pantoate ligase/cytidylate kinase
400	 55.25	0	445071..445727	+	218	56750409	-	syc0400_d	-	hypothetical protein
401	 56.65	0	445915..446892	+	325	56750410	rfbB	syc0401_d	-	dTDP-glucose 4,6-dehydratase
402	 52.87	0	446893..448110	-	405	56750411	-	syc0402_c	-	hypothetical protein
403	 55.37	0	448527..449234	+	235	56750412	-	syc0403_d	-	hypothetical protein
404	 53.88	0	449333..449590	+	85	56750413	-	syc0404_d	-	hypothetical protein
405	 48.01	-1	449636..449962	+	108	56750414	-	syc0405_d	-	promoter active fragment E3
406	 58.43	0	450350..451381	-	343	56750415	-	syc0406_c	-	hypothetical protein
407	 53.77	0	451604..452200	-	198	56750416	-	syc0407_c	-	hypothetical protein
408	 55.96	0	452279..453856	-	525	56750417	metG	syc0408_c	-	methionyl-tRNA synthetase
409	 56.91	0	453993..454679	+	228	56750418	-	syc0409_d	-	hypothetical protein
410	 58.30	0	454698..456455	+	585	56750419	-	syc0410_d	-	hypothetical protein
411	 55.89	0	456569..458239	+	556	56750420	-	syc0411_d	-	hypothetical protein
412	 60.33	+1	458214..459065	-	283	56750421	ycf62	syc0412_c	-	hypothetical protein
413	 59.04	0	459296..460042	+	248	56750422	ycf23	syc0413_d	-	hypothetical protein
414	 57.04	0	460180..462777	-	865	56750423	pepN	syc0414_c	-	aminopeptidase
415	 57.42	0	462873..463391	+	172	56750424	-	syc0415_d	-	cation transporter
416	 40.37	-2	465245..467389	+	714	56750425	-	syc0416_d	-	ABC transporter ATP-binding protein
417	 45.25	-2	467431..469134	+	567	56750426	-	syc0417_d	-	hypothetical protein
418	 45.05	-2	469185..469406	-	73	56750427	-	syc0418_c	-	ferredoxin-thioredoxin reductase variable subunit
419	 57.91	0	469545..471359	-	604	56750428	-	syc0419_c	-	hypothetical protein
420	 58.76	0	471416..472288	-	290	56750429	-	syc0420_c	-	hypothetical protein
421	 49.13	-1	472367..473455	-	362	56750430	-	syc0421_c	-	hypothetical protein
422	 57.62	0	473962..475431	-	489	56750431	tldD	syc0422_c	-	putative modulator of DNA gyrase TldD
423	 55.04	0	475581..476414	+	277	56750432	-	syc0423_d	-	ABC transporter permease protein
424	 57.05	0	476472..477407	-	311	56750433	-	syc0424_c	-	two-component sensor histidine kinase
425	 58.22	0	477504..479516	-	670	56750434	rnb	syc0425_c	-	ribonuclease II
426	 54.17	0	479538..479753	-	71	56750435	rpsR	syc0426_c	-	30S ribosomal protein S18
427	 54.87	0	479809..480003	-	64	56750436	rpmG	syc0427_c	-	50S ribosomal protein L33
428	 59.31	0	480181..482340	+	719	56750437	-	syc0428_d	-	serine/threonine kinase
429	 50.56	-1	482585..482944	+	119	56750438	-	syc0429_d	-	hypothetical protein
430	 49.12	-1	483510..484187	+	225	56750439	-	syc0430_d	-	hypothetical protein
431	 47.24	-2	484217..485740	+	507	56750440	-	syc0431_d	-	mercuric reductase
432	 42.84	-2	485761..486423	-	220	56750441	-	syc0432_c	-	hypothetical protein
433	 56.49	0	486628..487836	-	402	56750442	pgk	syc0433_c	-	phosphoglycerate kinase
434	 58.79	0	488084..488464	+	126	56750443	-	syc0434_d	-	hypothetical protein
435	 58.56	0	488461..489324	+	287	56750444	rbgA	syc0435_d	-	ribosomal biogenesis GTPase
436	 57.51	0	489331..490422	+	363	56750445	-	syc0436_d	-	hypothetical protein
437	 59.55	0	490419..491360	+	313	56750446	-	syc0437_d	-	ribosomal large subunit pseudouridine synthase D
438	 58.46	0	491357..492940	+	527	56750447	-	syc0438_d	-	serine/threonine kinase
439	 56.78	0	493277..493903	-	208	56750448	-	syc0439_c	-	two-component response regulator
440	 60.52	+1	494064..495137	-	357	56750449	hisC	syc0440_c	-	threonine-phosphate decarboxylase
441	 51.81	-1	495156..495431	-	91	56750450	-	syc0441_c	-	DNA binding protein HU
442	 60.42	+1	495714..496514	+	266	56750451	-	syc0442_d	-	hypothetical protein
443	 53.08	0	496655..497125	+	156	56750452	-	syc0443_d	-	hypothetical protein
444	 58.47	0	497269..498354	+	361	56750453	mrp	syc0444_d	-	ATP-binding protein involved in chromosome partitioning
445	 57.11	0	498386..499651	+	421	56750454	rodA	syc0445_d	-	rod shape determining protein
446	 58.74	0	499749..500480	+	243	56750455	-	syc0446_d	-	glucosamine-6-phosphate isomerase 2
447	 63.64	+1	500545..500973	-	142	56750456	-	syc0447_c	-	hypothetical protein
448	 58.38	0	500985..502142	-	385	56750457	-	syc0448_c	-	protease
449	 53.21	0	502252..503700	+	482	56750458	dnaA	syc0449_d	-	chromosomal replication initiation protein
450	 57.69	0	503841..504542	+	233	56750459	ubiE	syc0450_d	-	ubiquinone/menaquinone biosynthesis methyltransferase
451	 59.81	0	504632..505783	+	383	56750460	-	syc0451_d	-	hypothetical protein
452	 55.56	0	505856..505981	-	41	56750461	-	syc0452_c	-	hypothetical protein
453	 57.62	0	506079..507449	+	456	56750462	thiC	syc0453_d	-	thiamine biosynthesis protein ThiC
454	 56.10	0	507525..507950	-	141	56750463	-	syc0454_c	-	hypothetical protein
455	 56.31	0	508268..508885	+	205	56750464	tenA	syc0455_d	-	transcriptional activator TenA
456	 55.85	0	509023..510159	+	378	56750465	anmK	syc0456_d	-	anhydro-N-acetylmuramic acid kinase
457	 46.82	-2	510140..510799	+	219	56750466	-	syc0457_d	-	hypothetical protein
458	 58.59	0	511268..512431	-	387	56750467	-	syc0458_c	-	hypothetical protein
459	 55.39	0	512529..513326	+	265	56750468	-	syc0459_d	-	hypothetical protein
460	 50.72	-1	513442..516093	-	883	56750469	-	syc0460_c	-	ClpB protein
461	 57.94	0	516233..516610	-	125	56750470	petE	syc0461_c	-	plastocyanin
462	 54.46	0	516639..517613	-	324	56750471	-	syc0462_c	-	hypothetical protein
463	 57.09	0	517635..518699	-	354	56750472	hemE	syc0463_c	-	uroporphyrinogen decarboxylase
464	 56.43	0	518759..521083	-	774	56750473	glgB	syc0464_c	-	glycogen branching enzyme
465	 61.47	+1	521292..521618	+	108	56750474	-	syc0465_d	-	hypothetical protein
466	 59.11	0	521628..523004	-	458	56750475	-	syc0466_c	-	glycosyltransferase
467	 57.28	0	523287..526067	-	926	56750476	-	syc0467_c	-	cation-transporting ATPase PacL-like protein
468	 48.58	-1	526972..527673	-	233	56750477	-	syc0468_c	-	hypothetical protein
469	 46.88	-2	527680..529023	-	447	56750478	-	syc0469_c	-	V-type sodium ATP synthase subunit J-like protein
470	 56.81	0	529653..532106	-	817	56750479	recG	syc0470_c	-	ATP-dependent DNA helicase RecG
471	 57.80	0	532116..533051	-	311	56750480	-	syc0471_c	-	hypothetical protein
472	 55.91	0	533166..533537	-	123	56750481	-	syc0472_c	-	hypothetical protein
473	 46.04	-2	533807..534223	+	138	56750482	sis	syc0473_d	-	osmotic signal transduction related protein
474	 59.06	0	534371..535159	+	262	56750483	-	syc0474_d	-	hypothetical protein
475	 55.56	0	535242..535547	+	101	56750484	-	syc0475_d	-	hypothetical protein
476	 59.69	0	535637..536353	-	238	56750485	rph	syc0476_c	-	ribonuclease PH
477	 59.04	0	536470..537033	+	187	56750486	cobO	syc0477_d	-	cob(I)yrinic acid a,c-diamide adenosyltransferase
478	 56.89	0	537157..537657	+	166	56750487	-	syc0478_d	-	hypothetical protein
479	 56.77	0	537953..539074	+	373	56750488	-	syc0479_d	-	oxidoreductase aldo/keto reductase
480	 59.14	0	539062..539805	+	247	56750489	-	syc0480_d	-	hypothetical protein
481	 60.26	+1	540031..541326	-	431	56750490	pdhC	syc0481_c	-	branched-chain alpha-keto acid dehydrogenase subunit E2
482	 58.47	0	541522..542070	-	182	56750491	-	syc0482_c	-	hypothetical protein
483	 55.58	0	542320..545439	-	1039	56750492	-	syc0483_c	-	hypothetical protein
484	 42.29	-2	545436..546797	-	453	56750493	-	syc0484_c	-	type I restriction-modification
485	 47.39	-2	547062..547310	-	82	56750494	-	syc0485_c	-	hypothetical protein
486	 51.94	0	547324..547581	-	85	56750495	-	syc0486_c	-	hypothetical protein
487	 52.46	0	547591..548526	-	311	56750496	-	syc0487_c	-	hypothetical protein
488	 53.80	0	548752..550779	-	675	56750497	-	syc0488_c	-	type I restriction-modification
489	 59.16	0	550971..551903	-	310	56750498	-	syc0489_c	-	hypothetical protein
490	 58.22	0	552016..552228	-	70	56750499	ycf40	syc0490_c	-	hypothetical protein
55.98	MEAN

4.05	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.