IslandPath Analysis: Synechococcus elongatus PCC 6301



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 55.98   STD DEV: 4.05
Synechococcus elongatus PCC 6301, complete genome - 1..2696255
2527 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 52.96	0	323..1351	-	342	56750011	isiA	syc0002_c	-	iron-stress chlorophyll-binding protein
2	 54.12	0	1769..2023	+	84	56750012	-	syc0003_d	-	panthotenate metabolism flavoprotein
3	 51.54	-1	2026..2481	+	151	56750013	-	syc0004_d	-	plasmid stabilization protein StbB-like protein
4	 56.72	0	2459..3856	+	465	56750014	-	syc0005_d	-	putative ribonuclease II
5	 55.15	0	5289..6608	-	439	56750015	-	syc0006_c	-	amidase
6	 55.44	0	7099..7659	+	186	56750016	umuD	syc0007_d	-	DNA polymerase V
7	 53.22	0	7716..8972	+	418	56750017	umuC	syc0008_d	-	DNA polymerase V
8	 47.32	-2	9022..9786	+	254	56750018	-	syc0009_d	-	hypothetical protein
9	 57.50	0	10343..11335	-	330	56750019	ilvC	syc0010_c	-	ketol-acid reductoisomerase
10	 60.18	+1	11334..12227	+	297	56750020	-	syc0011_d	-	hypothetical protein
11	 57.24	0	12230..12823	-	197	56750021	clpP	syc0012_c	-	ATP-dependent Clp protease proteolytic subunit
12	 58.72	0	12876..13718	+	280	56750022	-	syc0013_d	-	Thf1-like protein
13	 56.56	0	13756..14418	+	220	56750023	-	syc0014_d	-	hypothetical protein
14	 55.94	0	14434..15384	-	316	56750024	rpoD6	syc0015_c	-	group2 RNA polymerase sigma factor RpoD6
15	 57.24	0	16117..17241	+	374	56750025	-	syc0016_d	-	hypothetical protein
16	 57.48	0	17254..17928	+	224	56750026	-	syc0017_d	-	hypothetical protein
17	 49.69	-1	18104..18262	+	52	56750027	-	syc0018_d	-	hypothetical protein
18	 45.60	-2	19151..19696	-	181	56750028	-	syc0019_c	-	hypothetical protein
19	 51.18	-1	19770..20447	-	225	56750029	-	syc0020_c	-	hypothetical protein
20	 41.97	-2	22065..22481	-	138	56750030	-	syc0021_c	-	signal transduction inhibitor
21	 55.66	0	22872..23189	+	105	56750031	-	syc0022_d	-	hypothetical protein
22	 56.84	0	23912..24379	+	155	56750032	-	syc0023_d	-	hypothetical protein
23	 55.60	0	24418..26613	+	731	56750033	ppk	syc0024_d	-	polyphosphate kinase
24	 55.42	0	27326..27565	-	79	56750034	-	syc0025_c	-	hypothetical protein
25	 59.34	0	27623..28141	-	172	56750035	-	syc0026_c	-	hypothetical protein
26	 57.40	0	28175..30418	-	747	56750036	pacS	syc0027_c	-	copper transporting CPx-type ATPase PacS
27	 48.89	-1	31032..31841	+	269	56750037	-	syc0028_d	-	pore-forming membrane protein
28	 55.07	0	32308..33894	+	528	56750038	-	syc0029_d	-	dehydrogenase subunit-like protein
29	 49.94	-1	33963..34763	+	266	56750039	-	syc0030_d	-	3-oxoacyl-[acyl-carrier protein] reductase
30	 54.51	0	34864..37536	+	890	56750040	-	syc0031_d	-	glucosidase
31	 57.53	0	37549..39594	+	681	56750041	malQ	syc0032_d	-	glycogen debranching enzyme-related protein
32	 57.61	0	39637..41028	+	463	56750042	-	syc0033_d	-	chloride channel protein
33	 56.52	0	41230..42984	-	584	56750043	argS	syc0034_c	-	arginyl-tRNA synthetase
34	 57.74	0	43141..43980	-	279	56750044	tatC	syc0035_c	-	sec-independent protein translocase protein TatC
35	 49.64	-1	44376..44927	+	183	56750045	-	syc0036_d	-	hypothetical protein
36	 58.68	0	44981..45268	-	95	56750046	-	syc0037_c	-	hypothetical protein
37	 51.49	-1	46112..47791	+	559	56750047	-	syc0038_d	-	hypothetical protein
38	 56.18	0	47793..49241	-	482	56750048	trmE	syc0039_c	-	tRNA modification GTPase TrmE
39	 56.61	0	49210..49716	+	168	56750049	-	syc0040_d	-	hypothetical protein
40	 58.28	0	49652..51130	-	492	56750050	-	syc0041_c	-	hypothetical protein
41	 57.20	0	51171..51983	-	270	56750051	-	syc0042_c	-	hypothetical protein
42	 57.74	0	52329..53639	+	436	56750052	-	syc0043_d	-	two-component sensor histidine kinase
43	 50.45	-1	53702..54034	-	110	56750053	-	syc0044_c	-	hypothetical protein
44	 58.76	0	54225..56804	-	859	56750054	-	syc0045_c	-	chloride channel protein
45	 58.76	0	56951..58240	-	429	56750055	pmbA	syc0046_c	-	putative modulator of DNA gyrase
46	 60.02	0	58244..59101	-	285	56750056	-	syc0047_c	-	hypothetical protein
47	 56.98	0	59105..59992	-	295	56750057	nbp1	syc0048_c	-	nucleic acid binding protein
48	 58.33	0	60089..60904	+	271	56750058	-	syc0049_d	-	creatinine amidohydrolase
49	 54.25	0	60926..61690	+	254	56750059	-	syc0050_d	-	hypothetical protein
50	 55.85	0	61705..62730	+	341	56750060	-	syc0051_d	-	hypothetical protein
51	 57.62	0	62740..63723	+	327	56750061	accA	syc0052_d	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
52	 60.43	+1	63841..64578	+	245	56750062	acdS	syc0053_d	-	short chain dehydrogenase
53	 57.94	0	64627..65268	+	213	56750063	folE	syc0054_d	-	GTP cyclohydrolase I
54	 59.50	0	65276..66070	+	264	56750064	-	syc0055_d	-	hypothetical protein
55	 60.22	+1	66067..67152	+	361	56750065	-	syc0056_d	-	hypothetical protein
56	 56.94	0	67158..68000	+	280	56750066	-	syc0057_d	-	5'5'''-P-1P-4-tetraphosphate phosphorylase II
57	 57.47	0	68028..68201	-	57	56750067	-	syc0058_c	-	hypothetical protein
58	 59.83	0	68200..69003	+	267	56750068	-	syc0059_d	-	tRNA/rRNA methyltransferase
59	 56.81	0	69280..70233	+	317	56750069	ampC	syc0060_d	-	beta-lactamase
60	 60.83	+1	70243..71595	+	450	56750070	-	syc0061_d	-	hypothetical protein
61	 50.95	-1	71600..72178	-	192	56750071	-	syc0062_c	-	hypothetical protein
62	 45.99	-2	72421..72981	+	186	56750072	-	syc0063_d	-	hypothetical protein
63	 53.65	0	73113..74648	-	511	56750073	-	syc0064_c	-	porin; major outer membrane protein
64	 58.25	0	74889..76313	+	474	56750074	manC	syc0065_d	-	mannose-1-phosphate guanylyltransferase
65	 53.26	0	76425..79871	+	1148	56750075	-	syc0066_d	-	ribonucleoside triphosphate reductase B
66	 57.63	0	79947..81362	-	471	56750076	pntB	syc0067_c	-	pyridine nucleotide transhydrogenase beta subunit
67	 54.76	0	81359..81652	-	97	56750077	pntA	syc0068_c	-	NAD(P) transhydrogenase subunit alpha
68	 60.88	+1	81649..82875	-	408	56750078	pntA	syc0069_c	-	pyridine nucleotide transhydrogenase alpha subunit
69	 59.33	0	82988..83587	+	199	56750079	-	syc0070_d	-	hypothetical protein
70	 65.22	+2	83635..83772	+	45	56750080	rpmH	syc0071_d	-	50S ribosomal protein L34
71	 56.37	0	83778..84146	+	122	56750081	rnpA	syc0072_d	-	ribonuclease P
72	 58.14	0	84133..84519	+	128	56750082	-	syc0073_d	-	hypothetical protein
73	 56.32	0	84722..85900	+	392	56750083	yidC	syc0074_d	-	putative inner membrane protein translocase component YidC
74	 57.99	0	85897..86403	+	168	56750084	-	syc0075_d	-	hypothetical protein
75	 57.41	0	86406..86675	+	89	56750085	-	syc0076_d	-	hypothetical protein
76	 59.21	0	86686..86913	+	75	56750086	-	syc0077_d	-	hypothetical protein
77	 57.84	0	86910..88415	+	501	56750087	ycf46	syc0078_d	-	hypothetical protein
78	 55.58	0	88555..90123	-	522	56750088	-	syc0079_c	-	Fe-S oxidoreductase
79	 57.12	0	90692..93163	+	823	56750089	-	syc0080_d	-	proteinase
80	 56.71	0	93236..93928	+	230	56750090	-	syc0081_d	-	hypothetical protein
81	 56.21	0	93956..94615	-	219	161621824	ribC	syc0082_c	-	riboflavin synthase subunit alpha
82	 53.35	0	94669..95892	-	407	56750092	-	syc0083_c	-	glycosyltransferase
83	 57.56	0	96039..96521	-	160	56750093	-	syc0084_c	-	hypothetical protein
84	 54.68	0	96525..96866	-	113	56750094	-	syc0085_c	-	hypothetical protein
85	 59.83	0	96857..97822	-	321	56750095	-	syc0086_c	-	hypothetical protein
86	 49.44	-1	98222..98941	+	239	56750096	-	syc0087_d	-	hypothetical protein
87	 54.05	0	99041..99682	+	213	56750097	-	syc0088_d	-	hypothetical protein
88	 56.55	0	99903..100238	+	111	56750098	petJ	syc0089_d	-	cytochrome c6
89	 59.44	0	100239..101138	+	299	56750099	-	syc0090_d	-	CytB protein
90	 50.39	-1	101233..101742	+	169	56750100	-	syc0091_d	-	hypothetical protein
91	 49.79	-1	102339..103061	+	240	56750101	-	syc0092_d	-	hypothetical protein
92	 46.11	-2	103083..103622	-	179	56750102	-	syc0093_c	-	hypothetical protein
93	 54.36	0	103793..105433	-	546	56750103	-	syc0094_c	-	porin; major outer membrane protein
94	 56.49	0	105655..106725	+	356	56750104	-	syc0095_d	-	Iron-regulated protein A precursor
95	 58.39	0	107195..108088	+	297	56750105	-	syc0096_d	-	thiol oxidoreductase
96	 56.59	0	108219..108476	+	85	56750106	-	syc0097_d	-	hypothetical protein
97	 58.62	0	108585..109205	+	206	56750107	-	syc0098_d	-	hypothetical protein
98	 58.20	0	109269..109835	+	188	56750108	-	syc0099_d	-	hypothetical protein
99	 61.80	+1	109815..110492	-	225	56750109	plsC	syc0100_c	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
100	 57.71	0	110461..111342	-	293	56750110	-	syc0101_c	-	acyl-carrier-protein S-malonyltransferase
55.98	MEAN

4.05	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.