IslandPathversion 1.0

IslandPath Analysis: Synechococcus elongatus PCC 6301



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.98 STD DEV: 4.05
Synechococcus elongatus PCC 6301, complete genome - 1..2696255
2527 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
330	 56.18	0	378472..378738	-	88	56750339	rpmA	syc0330_c	-	50S ribosomal protein L27
331	 54.43	0	378773..379156	-	127	56750340	rplU	syc0331_c	-	50S ribosomal protein L21
332	 52.63	0	379394..380248	+	284	56750341	kaiA	syc0332_d	-	circadian clock protein KaiA
333	 45.95	-2	380338..380646	+	102	56750342	kaiB	syc0333_d	-	circadian clock protein KaiB
334	 48.85	-1	380696..382255	+	519	56750343	kaiC	syc0334_d	-	circadian clock protein KaiC
335	 58.83	0	382252..383259	-	335	56750344	-	syc0335_c	-	acyl-CoA dehydrogenase family protein
336	 55.16	0	383285..383788	-	167	56750345	gpx1	syc0336_c	-	glutathione peroxidase
337	 56.35	0	383919..384335	-	138	56750346	-	syc0337_c	-	virulence associated protein C
338	 50.57	-1	384715..384975	+	86	56750347	-	syc0338_d	-	hypothetical protein
339	 46.09	-2	384980..385324	+	114	56750348	mobA	syc0339_d	-	molybdopterin-guanine dinucleotide biosynthesis protein A
340	 40.56	-2	385324..385572	+	82	56750349	-	syc0340_d	-	hypothetical protein
341	 42.53	-2	385575..385835	+	86	56750350	-	syc0341_d	-	hypothetical protein
342	 49.41	-1	385957..386211	+	84	56750351	-	syc0342_d	-	hypothetical protein
343	 49.62	-1	386204..386467	+	87	56750352	-	syc0343_d	-	hypothetical protein
344	 48.55	-1	386594..386869	-	91	56750353	-	syc0344_c	-	hypothetical protein
345	 56.97	0	386866..387030	-	54	56750354	-	syc0345_c	-	a part of phage_integrase
346	 57.78	0	387031..387345	+	104	56750355	-	syc0346_d	-	hypothetical protein
347	 54.35	0	387342..387755	+	137	56750356	-	syc0347_d	-	hypothetical protein
348	 59.04	0	387843..390293	+	816	56750357	-	syc0348_d	-	hypothetical protein
349	 57.30	0	390297..391727	+	476	56750358	-	syc0349_d	-	glycosyltransferase
350	 58.52	0	391837..392757	+	306	56750359	-	syc0350_d	-	hypothetical protein
351	 60.75	+1	392726..393502	+	258	56750360	-	syc0351_d	-	tRNA/rRNA methyltransferase
352	 59.24	0	393561..395000	+	479	56750361	phdD	syc0352_d	-	dihydrolipoamide dehydrogenase
353	 57.66	0	395077..395964	+	295	56750362	trpC	syc0353_d	-	indole-3-glycerol-phosphate synthase
354	 59.07	0	396271..396507	-	78	56750363	-	syc0354_c	-	hypothetical protein
355	 54.79	0	396584..397282	-	232	56750364	-	syc0355_c	-	hypothetical protein
356	 58.90	0	397310..398107	-	265	56750365	pdxJ	syc0356_c	-	pyridoxal phosphate biosynthetic protein PdxJ
357	 59.90	0	398362..399129	+	255	56750366	-	syc0357_d	-	putative acyltransferase
358	 58.46	0	399207..399815	+	202	56750367	-	syc0358_d	-	hypothetical protein
359	 55.98	0	399905..400456	-	183	56750368	gmk	syc0359_c	-	guanylate kinase
360	 58.80	0	400625..402085	+	486	56750369	-	syc0360_d	-	leucyl aminopeptidase
361	 60.34	+1	402176..402760	+	194	56750370	-	syc0361_d	-	molybdopterin-guanine dinucleotide biosynthesis protein A
362	 53.18	0	402764..403156	-	130	56750371	-	syc0362_c	-	AP-4-A phosphorylase II-like protein
363	 55.19	0	403274..404449	-	391	56750372	-	syc0363_c	-	hypothetical protein
364	 58.80	0	404456..405154	-	232	56750373	ribD	syc0364_c	-	a part of riboflavin biosynthesis protein RibD
365	 58.70	0	405158..405433	-	91	56750374	-	syc0365_c	-	hypothetical protein
366	 55.26	0	405665..406567	-	300	56750375	-	syc0366_c	-	6-pyruvoyl-tetrahydropterin synthase-like protein
367	 59.81	0	406592..407335	-	247	56750376	-	syc0367_c	-	hypothetical protein
368	 56.84	0	407493..408011	-	172	56750377	ndhJ	syc0368_c	-	NADH dehydrogenase subunit J
369	 57.91	0	408004..408711	-	235	56750378	ndhK	syc0369_c	-	NADH dehydrogenase subunit B
370	 54.23	0	408702..409103	-	133	56750379	ndhC	syc0370_c	-	NADH dehydrogenase subunit A
371	 58.51	0	409277..409693	+	138	56750380	rub	syc0371_d	-	rubredoxin
372	 58.67	0	409726..410775	+	349	56750381	-	syc0372_d	-	Ycf48-like protein
373	 54.76	0	410840..411091	+	83	56750382	psbE	syc0373_d	-	cytochrome b559 subunit alpha
374	 55.56	0	411113..411247	+	44	56750383	psbF	syc0374_d	-	cytochrome b559 subunit beta
375	 49.21	-1	411260..411385	+	41	56750384	psbL	syc0375_d	-	photosystem II PsbL protein
376	 60.00	0	411462..411581	+	39	56750385	psbJ	syc0376_d	-	photosystem II reaction center protein J
377	 57.84	0	411671..412939	-	422	56750386	-	syc0377_c	-	hypothetical protein
378	 60.73	+1	413209..414657	+	482	56750387	lnt	syc0378_d	-	apolipoprotein N-acyltransferase
379	 50.53	-1	414696..416207	+	503	56750388	-	syc0379_d	-	hypothetical protein
380	 56.94	0	416486..416968	+	160	56750389	ispF	syc0380_d	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
381	 52.88	0	416934..418703	+	589	56750390	-	syc0381_d	-	oligopeptide-binding protein of oligopeptide ABC transporter
382	 58.37	0	418696..419478	+	260	56750391	cpmA	syc0382_d	-	circadian phase modifier CpmA
383	 53.76	0	419475..420032	+	185	56750392	-	syc0383_d	-	hypothetical protein
384	 58.07	0	420043..421368	-	441	56750393	-	syc0384_c	-	hypothetical protein
385	 50.00	-1	421674..421961	+	95	56750394	-	syc0385_d	-	AP-4-A phosphorylase II-like protein
386	 38.39	-2	421964..423388	-	474	56750395	-	syc0386_c	-	hypothetical protein
387	 58.50	0	424313..425488	-	391	56750396	-	syc0387_c	-	hypothetical protein
388	 56.36	0	425504..425959	-	151	56750397	-	syc0388_c	-	hypothetical protein
389	 60.20	+1	425963..426457	-	164	56750398	-	syc0389_c	-	hypothetical protein
390	 58.91	0	426506..427408	-	300	56750399	-	syc0390_c	-	hypothetical protein
391	 56.69	0	427513..428013	+	166	56750400	-	syc0391_d	-	transcriptional regulator
392	 41.57	-2	428321..431500	+	1059	56750401	-	syc0392_d	-	hypothetical protein
393	 55.90	0	431539..434724	-	1061	56750402	-	syc0393_c	-	hypothetical protein
394	 58.35	0	434711..437308	-	865	56750403	-	syc0394_c	-	hypothetical protein
395	 56.38	0	437610..438299	-	229	56750404	-	syc0395_c	-	hypothetical protein
396	 58.92	0	438263..439669	+	468	56750405	-	syc0396_d	-	hypothetical protein
397	 59.24	0	439666..441510	+	614	56750406	-	syc0397_d	-	hypothetical protein
398	 59.26	0	442110..443135	+	341	56750407	-	syc0398_d	-	hypothetical protein
399	 59.03	0	443339..444922	+	527	56750408	panC	syc0399_d	-	bifunctional pantoate ligase/cytidylate kinase
400	 55.25	0	445071..445727	+	218	56750409	-	syc0400_d	-	hypothetical protein
401	 56.65	0	445915..446892	+	325	56750410	rfbB	syc0401_d	-	dTDP-glucose 4,6-dehydratase
402	 52.87	0	446893..448110	-	405	56750411	-	syc0402_c	-	hypothetical protein
403	 55.37	0	448527..449234	+	235	56750412	-	syc0403_d	-	hypothetical protein
404	 53.88	0	449333..449590	+	85	56750413	-	syc0404_d	-	hypothetical protein
405	 48.01	-1	449636..449962	+	108	56750414	-	syc0405_d	-	promoter active fragment E3
406	 58.43	0	450350..451381	-	343	56750415	-	syc0406_c	-	hypothetical protein
407	 53.77	0	451604..452200	-	198	56750416	-	syc0407_c	-	hypothetical protein
408	 55.96	0	452279..453856	-	525	56750417	metG	syc0408_c	-	methionyl-tRNA synthetase
409	 56.91	0	453993..454679	+	228	56750418	-	syc0409_d	-	hypothetical protein
410	 58.30	0	454698..456455	+	585	56750419	-	syc0410_d	-	hypothetical protein
411	 55.89	0	456569..458239	+	556	56750420	-	syc0411_d	-	hypothetical protein
412	 60.33	+1	458214..459065	-	283	56750421	ycf62	syc0412_c	-	hypothetical protein
413	 59.04	0	459296..460042	+	248	56750422	ycf23	syc0413_d	-	hypothetical protein
414	 57.04	0	460180..462777	-	865	56750423	pepN	syc0414_c	-	aminopeptidase
415	 57.42	0	462873..463391	+	172	56750424	-	syc0415_d	-	cation transporter
416	 40.37	-2	465245..467389	+	714	56750425	-	syc0416_d	-	ABC transporter ATP-binding protein
417	 45.25	-2	467431..469134	+	567	56750426	-	syc0417_d	-	hypothetical protein
418	 45.05	-2	469185..469406	-	73	56750427	-	syc0418_c	-	ferredoxin-thioredoxin reductase variable subunit
419	 57.91	0	469545..471359	-	604	56750428	-	syc0419_c	-	hypothetical protein
420	 58.76	0	471416..472288	-	290	56750429	-	syc0420_c	-	hypothetical protein
421	 49.13	-1	472367..473455	-	362	56750430	-	syc0421_c	-	hypothetical protein
422	 57.62	0	473962..475431	-	489	56750431	tldD	syc0422_c	-	putative modulator of DNA gyrase TldD
423	 55.04	0	475581..476414	+	277	56750432	-	syc0423_d	-	ABC transporter permease protein
424	 57.05	0	476472..477407	-	311	56750433	-	syc0424_c	-	two-component sensor histidine kinase
425	 58.22	0	477504..479516	-	670	56750434	rnb	syc0425_c	-	ribonuclease II
426	 54.17	0	479538..479753	-	71	56750435	rpsR	syc0426_c	-	30S ribosomal protein S18
427	 54.87	0	479809..480003	-	64	56750436	rpmG	syc0427_c	-	50S ribosomal protein L33
428	 59.31	0	480181..482340	+	719	56750437	-	syc0428_d	-	serine/threonine kinase
429	 50.56	-1	482585..482944	+	119	56750438	-	syc0429_d	-	hypothetical protein
55.98	MEAN

4.05	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.