IslandPathversion 1.0

IslandPath Analysis: Synechococcus elongatus PCC 6301



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.98 STD DEV: 4.05
Synechococcus elongatus PCC 6301, complete genome - 1..2696255
2527 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
250	 53.88	0	289650..290048	+	132	56750259	-	syc0250_d	-	hypothetical protein
251	 51.94	0	290074..290562	-	162	56750260	-	syc0251_c	-	hypothetical protein
252	 58.44	0	290659..292080	-	473	56750261	recQ	syc0252_c	-	ATP-dependent DNA helicase RecQ
253	 55.26	0	292138..292707	-	189	56750262	-	syc0253_c	-	hypothetical protein
254	 54.41	0	292946..293908	+	320	56750263	-	syc0254_d	-	hypothetical protein
255	 45.23	-2	293963..295693	-	576	56750264	-	syc0255_c	-	hypothetical protein
256	 56.52	0	296481..297890	-	469	56750265	-	syc0256_c	-	malic enzyme
257	 56.75	0	298207..298902	-	231	56750266	-	syc0257_c	-	hypothetical protein
258	 55.87	0	299042..300430	+	462	56750267	-	syc0258_d	-	hypothetical protein
259	 56.82	0	300498..302183	-	561	56750268	-	syc0259_c	-	serine/threonine kinase
260	 58.37	0	302202..304637	+	811	56750269	pheT	syc0260_d	-	phenylalanyl-tRNA synthetase subunit beta
261	 57.31	0	304780..306864	+	694	56750270	dnaG	syc0261_d	-	DNA primase
262	 55.28	0	306874..307242	-	122	56750271	ziaR	syc0262_c	-	zinc-responsive repressor ZiaR
263	 57.31	0	307343..307513	+	56	56750272	-	syc0263_d	-	SmtA metallothionein
264	 58.99	0	307622..308962	-	446	56750273	pmbA	syc0264_c	-	putative modulator of DNA gyrase
265	 54.24	0	309269..309775	-	168	56750274	-	syc0265_c	-	hypothetical protein
266	 42.94	-2	309941..311773	-	610	56750275	-	syc0266_c	-	S-layer-RTX protein
267	 58.50	0	312288..313523	-	411	56750276	moeA	syc0267_c	-	molybdopterin biosynthesis MoeA protein
268	 59.16	0	313603..314574	+	323	56750277	moaC	syc0268_d	-	bifunctional molybdenum cofactor biosynthesis protein C/molybdopterin-binding protein
269	 58.61	0	314571..314843	+	90	56750278	-	syc0269_d	-	molybdopterin converting factor subunit 1
270	 57.63	0	314846..315343	+	165	56750279	-	syc0270_d	-	molybdopterin converting factor subunit 2
271	 56.10	0	315340..316323	+	327	56750280	moaA	syc0271_d	-	molybdenum cofactor biosynthesis protein A
272	 56.71	0	316967..317659	+	230	56750281	-	syc0272_d	-	hypothetical protein
273	 57.35	0	317665..318759	+	364	56750282	-	syc0273_d	-	hypothetical protein
274	 55.72	0	319034..319234	+	66	56750283	rpmI	syc0274_d	-	50S ribosomal protein L35
275	 56.13	0	319279..319629	+	116	56750284	rplT	syc0275_d	-	50S ribosomal protein L20
276	 57.60	0	319640..320422	+	260	56750285	gtrC	syc0276_d	-	polar amino acid transport system substrate-binding proetin
277	 56.70	0	320453..321616	+	387	56750286	-	syc0277_d	-	hypothetical protein
278	 55.49	0	321646..322173	+	175	56750287	ycf37	syc0278_d	-	photosystem I assembly related protein
279	 59.38	0	322457..323992	-	511	56750288	-	syc0279_c	-	hypothetical protein
280	 57.20	0	324043..324570	+	175	56750289	-	syc0280_d	-	hypothetical protein
281	 54.20	0	324629..325366	+	245	56750290	-	syc0281_d	-	hypothetical protein
282	 55.51	0	325865..327262	-	465	56750291	-	syc0282_c	-	Mg2+ transport protein
283	 57.53	0	327573..329027	+	484	56750292	-	syc0283_d	-	phosphoglucomutase/phosphomannomutase
284	 57.82	0	329075..329854	+	259	56750293	-	syc0284_d	-	hypothetical protein
285	 58.74	0	329851..330342	+	163	56750294	-	syc0285_d	-	hypothetical protein
286	 57.14	0	330545..331258	+	237	56750295	-	syc0286_d	-	hypothetical protein
287	 58.32	0	331221..332825	-	534	56750296	-	syc0287_c	-	Na+/H+ antiporter
288	 57.04	0	333221..334093	+	290	56750297	-	syc0288_d	-	hypothetical protein
289	 55.19	0	334157..335776	+	539	56750298	-	syc0289_d	-	uncharacterized FAD-dependent dehydrogenase
290	 56.04	0	335820..336581	+	253	56750299	tpiA	syc0290_d	-	triosephosphate isomerase
291	 56.52	0	336733..337560	-	275	56750300	-	syc0291_c	-	hypothetical protein
292	 54.62	0	337633..338811	-	392	56750301	-	syc0292_c	-	putative arsenical pump-driving ATPase
293	 57.25	0	338859..339272	-	137	56750302	-	syc0293_c	-	hypothetical protein
294	 60.66	+1	339272..341119	-	615	56750303	-	syc0294_c	-	chloride channel
295	 58.92	0	341171..341725	-	184	56750304	gst	syc0295_c	-	glutathione S-transferase
296	 58.16	0	341789..342952	+	387	56750305	-	syc0296_d	-	L-cysteine/cystine lyase
297	 57.32	0	342949..343344	-	131	56750306	-	syc0297_c	-	hypothetical protein
298	 57.12	0	343971..345248	-	425	56750307	-	syc0298_c	-	DNA repair protein RAD32
299	 59.14	0	345317..346366	-	349	56750308	-	syc0299_c	-	O-sialoglycoprotein endopeptidase
300	 58.75	0	346544..347023	+	159	56750309	psaF	syc0300_d	-	photosystem I reaction center subunit III precursor
301	 45.93	-2	347049..347183	+	44	56750310	psaJ	syc0301_d	-	photosystem I reaction center subunit IX
302	 55.75	0	347576..348253	-	225	56750311	-	syc0302_c	-	hypothetical protein
303	 54.17	0	348243..348482	-	79	56750312	-	syc0303_c	-	hypothetical protein
304	 56.04	0	348487..350001	-	504	56750313	-	syc0304_c	-	carotene isomerase
305	 56.41	0	350459..350770	-	103	56750314	-	syc0305_c	-	hypothetical protein
306	 53.91	0	351141..352457	-	438	56750315	-	syc0306_c	-	ABC-2 type transport system ATP-binding protein
307	 59.20	0	352687..353382	+	231	56750316	-	syc0307_d	-	cAMP/cGMP binding protein
308	 56.34	0	353747..354676	-	309	56750317	ntcB	syc0308_c	-	nitrate assimilation transcriptional activator
309	 59.05	0	354667..355716	-	349	56750318	nirB	syc0309_c	-	nitrite reductase related protein
310	 55.56	0	356003..357541	+	512	56750319	nirA	syc0310_d	-	ferredoxin-nitrite reductase
311	 55.86	0	357606..358937	+	443	56750320	nrtA	syc0311_d	-	ABC-type nitrate/nitrite transport system substrate-binding protein
312	 53.45	0	358994..359833	+	279	56750321	nrtB	syc0312_d	-	ABC-type nitrate/nitrite transport system permease protein
313	 59.09	0	359848..361827	+	659	56750322	nrtC	syc0313_d	-	ABC-type nitrate/nitrite transport system ATP-binding protein
314	 57.70	0	361837..362661	+	274	56750323	nrtD	syc0314_d	-	ABC-type nitrate/nitrite transport system ATP-binding protein
315	 57.72	0	362859..365048	+	729	56750324	narB	syc0315_d	-	ferredoxin-nitrate reductase
316	 55.81	0	365563..366087	-	174	56750325	-	syc0316_c	-	hypothetical protein
317	 41.52	-2	366332..367015	+	227	56750326	-	syc0317_d	-	hypothetical protein
318	 58.33	0	367316..367855	+	179	56750327	petC	syc0318_d	-	cytochrome b6-f complex iron-sulfur subunit
319	 55.90	0	367901..368875	+	324	56750328	petA	syc0319_d	-	apocytochrome f
320	 56.67	0	368959..369828	+	289	56750329	-	syc0320_d	-	prolipoprotein diacylglyceryl transferase
321	 58.00	0	369782..370612	+	276	56750330	cobM	syc0321_d	-	precorrin-4 C11-methyltransferase
322	 57.59	0	370581..371450	-	289	56750331	-	syc0322_c	-	hypothetical protein
323	 58.50	0	371478..372212	+	244	56750332	radC	syc0323_d	-	DNA repair protein RadC
324	 57.47	0	372436..373773	-	445	56750333	-	syc0324_c	-	processing protease
325	 56.63	0	373878..374624	+	248	56750334	-	syc0325_d	-	phycocyanobilin:ferredoxin oxidoreductase
326	 58.49	0	374713..375813	+	366	56750335	-	syc0326_d	-	ABC-transporter membrane fusion protein
327	 56.66	0	375797..376975	+	392	56750336	-	syc0327_d	-	ABC transporter permease protein
328	 58.98	0	376996..377880	-	294	56750337	truB	syc0328_c	-	tRNA pseudouridine synthase B
329	 48.15	-1	377973..378350	+	125	56750338	-	syc0329_d	-	CheY family two-component response regulator
330	 56.18	0	378472..378738	-	88	56750339	rpmA	syc0330_c	-	50S ribosomal protein L27
331	 54.43	0	378773..379156	-	127	56750340	rplU	syc0331_c	-	50S ribosomal protein L21
332	 52.63	0	379394..380248	+	284	56750341	kaiA	syc0332_d	-	circadian clock protein KaiA
333	 45.95	-2	380338..380646	+	102	56750342	kaiB	syc0333_d	-	circadian clock protein KaiB
334	 48.85	-1	380696..382255	+	519	56750343	kaiC	syc0334_d	-	circadian clock protein KaiC
335	 58.83	0	382252..383259	-	335	56750344	-	syc0335_c	-	acyl-CoA dehydrogenase family protein
336	 55.16	0	383285..383788	-	167	56750345	gpx1	syc0336_c	-	glutathione peroxidase
337	 56.35	0	383919..384335	-	138	56750346	-	syc0337_c	-	virulence associated protein C
338	 50.57	-1	384715..384975	+	86	56750347	-	syc0338_d	-	hypothetical protein
339	 46.09	-2	384980..385324	+	114	56750348	mobA	syc0339_d	-	molybdopterin-guanine dinucleotide biosynthesis protein A
340	 40.56	-2	385324..385572	+	82	56750349	-	syc0340_d	-	hypothetical protein
341	 42.53	-2	385575..385835	+	86	56750350	-	syc0341_d	-	hypothetical protein
342	 49.41	-1	385957..386211	+	84	56750351	-	syc0342_d	-	hypothetical protein
343	 49.62	-1	386204..386467	+	87	56750352	-	syc0343_d	-	hypothetical protein
344	 48.55	-1	386594..386869	-	91	56750353	-	syc0344_c	-	hypothetical protein
345	 56.97	0	386866..387030	-	54	56750354	-	syc0345_c	-	a part of phage_integrase
346	 57.78	0	387031..387345	+	104	56750355	-	syc0346_d	-	hypothetical protein
347	 54.35	0	387342..387755	+	137	56750356	-	syc0347_d	-	hypothetical protein
348	 59.04	0	387843..390293	+	816	56750357	-	syc0348_d	-	hypothetical protein
349	 57.30	0	390297..391727	+	476	56750358	-	syc0349_d	-	glycosyltransferase
55.98	MEAN

4.05	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.